script-arden_analyze

Script arden_analyze |
[hide private]
[frames] | no frames]

# Script arden_analyze

Created on Thu Aug 18 2012

Script for analyzing mapping results using an artificial reference genome (ART / ARG). An exhaustive comparison is performed between the input files (SAM format). The goal is to calculate a ROC curve and the AUC value to compare different read mapper / different settings on the same read mapper. Therefore FP and TP have to be identified. The TP are from the original reference. The FP are from the ART and are defined as unique mappings in a sense that no FP alignment occurs on the reference.

Author: Sven Giese

Functions | [hide private]
TestFiles(input) Function which checks if all required files are correctly specified (existing) |
main() Control function for arden-analyze |

Variables | [hide private]
| __package__ = `None`