/**
 * Scaffolding file used to store all the setups needed to run 
 * tests automatically generated by EvoSuite
 * Thu Sep 20 11:48:32 GMT 2018
 */

package uk.ac.sanger.artemis.circular;

import org.evosuite.runtime.annotation.EvoSuiteClassExclude;
import org.junit.BeforeClass;
import org.junit.Before;
import org.junit.After;
import org.junit.AfterClass;
import org.evosuite.runtime.sandbox.Sandbox;
import org.evosuite.runtime.sandbox.Sandbox.SandboxMode;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import java.util.concurrent.Future;
import java.util.concurrent.TimeUnit;

@EvoSuiteClassExclude
public class DNADraw_ESTest_scaffolding {

  @org.junit.Rule 
  public org.evosuite.runtime.vnet.NonFunctionalRequirementRule nfr = new org.evosuite.runtime.vnet.NonFunctionalRequirementRule();

  protected static ExecutorService executor; 

  private static final java.util.Properties defaultProperties = (java.util.Properties) java.lang.System.getProperties().clone(); 

  private org.evosuite.runtime.thread.ThreadStopper threadStopper =  new org.evosuite.runtime.thread.ThreadStopper (org.evosuite.runtime.thread.KillSwitchHandler.getInstance(), 3000);


  @BeforeClass 
  public static void initEvoSuiteFramework() { 
    org.evosuite.runtime.RuntimeSettings.className = "uk.ac.sanger.artemis.circular.DNADraw"; 
    org.evosuite.runtime.GuiSupport.initialize(); 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfThreads = 100; 
    org.evosuite.runtime.RuntimeSettings.maxNumberOfIterationsPerLoop = 10000; 
    org.evosuite.runtime.RuntimeSettings.mockSystemIn = true; 
    org.evosuite.runtime.RuntimeSettings.sandboxMode = org.evosuite.runtime.sandbox.Sandbox.SandboxMode.RECOMMENDED; 
    org.evosuite.runtime.sandbox.Sandbox.initializeSecurityManagerForSUT(); 
    executor = Executors.newCachedThreadPool(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.init();
    setSystemProperties();
    initializeClasses();
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
  } 

  @AfterClass 
  public static void clearEvoSuiteFramework(){ 
    Sandbox.resetDefaultSecurityManager(); 
    executor.shutdownNow(); 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
  } 

  @Before 
  public void initTestCase(){ 
    threadStopper.storeCurrentThreads();
    threadStopper.startRecordingTime();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().initHandler(); 
    org.evosuite.runtime.sandbox.Sandbox.goingToExecuteSUTCode(); 
    setSystemProperties(); 
    org.evosuite.runtime.GuiSupport.setHeadless(); 
    org.evosuite.runtime.Runtime.getInstance().resetRuntime(); 
    org.evosuite.runtime.agent.InstrumentingAgent.activate(); 
  } 

  @After 
  public void doneWithTestCase(){ 
    threadStopper.killAndJoinClientThreads();
    org.evosuite.runtime.jvm.ShutdownHookHandler.getInstance().safeExecuteAddedHooks(); 
    org.evosuite.runtime.classhandling.JDKClassResetter.reset(); 
    resetClasses(); 
    org.evosuite.runtime.sandbox.Sandbox.doneWithExecutingSUTCode(); 
    org.evosuite.runtime.agent.InstrumentingAgent.deactivate(); 
    org.evosuite.runtime.GuiSupport.restoreHeadlessMode(); 
  } 

  public static void setSystemProperties() {
 
    java.lang.System.setProperties((java.util.Properties) defaultProperties.clone()); 
    java.lang.System.setProperty("file.encoding", "UTF-8"); 
    java.lang.System.setProperty("java.awt.headless", "true"); 
    java.lang.System.setProperty("java.io.tmpdir", "/var/folders/r3/l648tx8s7hn8ppds6z2bk5cc000h2n/T/"); 
    java.lang.System.setProperty("user.country", "GB"); 
    java.lang.System.setProperty("user.dir", "/Users/kp11/workspace/applications/Artemis-build-ci/Artemis"); 
    java.lang.System.setProperty("user.home", "/Users/kp11"); 
    java.lang.System.setProperty("user.language", "en"); 
    java.lang.System.setProperty("user.name", "kp11"); 
    java.lang.System.setProperty("user.timezone", ""); 
    java.lang.System.setProperty("log4j.configuration", "SUT.log4j.properties"); 
  }

  private static void initializeClasses() {
    org.evosuite.runtime.classhandling.ClassStateSupport.initializeClasses(DNADraw_ESTest_scaffolding.class.getClassLoader() ,
      "uk.ac.sanger.artemis.components.LogViewer$1",
      "uk.ac.sanger.artemis.io.EntryInformationException",
      "uk.ac.sanger.artemis.io.GFFMisc",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "org.apache.log4j.AppenderSkeleton",
      "uk.ac.sanger.artemis.chado.IBatisDAO",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry$1",
      "org.apache.log4j.Level",
      "uk.ac.sanger.artemis.io.SimpleDocumentFeature",
      "uk.ac.sanger.artemis.sequence.BasePatternFormatException",
      "uk.ac.sanger.artemis.io.EntryInformation",
      "uk.ac.sanger.artemis.EntryChangeListener",
      "uk.ac.sanger.artemis.sequence.MarkerChangeListener",
      "org.apache.batik.bridge.ScriptSecurity",
      "org.apache.batik.bridge.BridgeException",
      "uk.ac.sanger.artemis.sequence.AminoAcidSequence",
      "uk.ac.sanger.artemis.Selectable",
      "uk.ac.sanger.artemis.io.ReadFormatException",
      "uk.ac.sanger.artemis.io.RangeVector",
      "uk.ac.sanger.artemis.io.FeatureTable",
      "uk.ac.sanger.artemis.io.PublicDBDocumentEntry",
      "uk.ac.sanger.artemis.EntrySourceVector",
      "org.apache.batik.bridge.ExternalResourceSecurity",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.LastSegmentException",
      "org.gmod.schema.dao.SchemaDaoI",
      "uk.ac.sanger.artemis.ChangeEvent",
      "uk.ac.sanger.artemis.util.OutOfRangeException",
      "uk.ac.sanger.artemis.io.GenbankStreamFeature",
      "org.apache.log4j.Hierarchy",
      "uk.ac.sanger.artemis.sequence.MarkerRange",
      "uk.ac.sanger.artemis.io.EMBLObject",
      "uk.ac.sanger.artemis.ActionVector",
      "uk.ac.sanger.artemis.sequence.Strand",
      "uk.ac.sanger.artemis.chado.GmodDAO",
      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.log4j.spi.OptionHandler",
      "uk.ac.sanger.artemis.OptionChangeListener",
      "uk.ac.sanger.artemis.circular.TrackManager",
      "uk.ac.sanger.artemis.circular.UserGraph",
      "uk.ac.sanger.artemis.io.Sequence",
      "uk.ac.sanger.artemis.circular.GCSkewGraph",
      "org.apache.xmlgraphics.java2d.GraphicContext",
      "uk.ac.sanger.artemis.util.LargeObjectDocument",
      "uk.ac.sanger.artemis.io.GenbankMisc",
      "uk.ac.sanger.artemis.chado.JdbcDAO",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "org.gmod.schema.dao.GeneralDaoI",
      "uk.ac.sanger.artemis.components.Splash$3",
      "org.gmod.schema.dao.BaseDaoI",
      "org.apache.log4j.helpers.OptionConverter",
      "uk.ac.sanger.artemis.io.Location",
      "uk.ac.sanger.artemis.io.MiscLineGroup",
      "uk.ac.sanger.artemis.circular.TextFieldInt",
      "uk.ac.sanger.artemis.io.PublicDBStreamFeature",
      "uk.ac.sanger.artemis.circular.DNADraw$26",
      "org.apache.log4j.or.ObjectRenderer",
      "org.gmod.schema.cv.CvTerm",
      "uk.ac.sanger.artemis.circular.Track",
      "uk.ac.sanger.artemis.sequence.SequenceChangeListener",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithoutTransparency",
      "org.apache.batik.bridge.Mark",
      "uk.ac.sanger.artemis.io.FeatureEnumeration",
      "uk.ac.sanger.artemis.io.InvalidRelationException",
      "uk.ac.sanger.artemis.io.StreamFeature",
      "uk.ac.sanger.artemis.util.ReadOnlyException",
      "org.apache.log4j.Category",
      "uk.ac.sanger.artemis.io.LocationParseException",
      "uk.ac.sanger.artemis.FilteredEntryGroup$3",
      "uk.ac.sanger.artemis.EntryChangeEvent",
      "uk.ac.sanger.artemis.FilteredEntryGroup$2",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.FilteredEntryGroup$1",
      "uk.ac.sanger.artemis.Feature",
      "uk.ac.sanger.artemis.io.EmblDocumentEntry",
      "org.apache.batik.css.engine.CSSContext",
      "uk.ac.sanger.artemis.io.DocumentFeature",
      "uk.ac.sanger.artemis.circular.BlockComparator",
      "org.apache.log4j.spi.LoggerFactory",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "org.apache.log4j.spi.Configurator",
      "org.gmod.schema.pub.Pub",
      "uk.ac.sanger.artemis.io.MSPcrunchStreamFeature",
      "org.gmod.schema.sequence.Feature",
      "uk.ac.sanger.artemis.io.KeyVector",
      "org.apache.batik.bridge.UserAgentAdapter",
      "uk.ac.sanger.artemis.circular.Block",
      "uk.ac.sanger.artemis.io.GenbankStreamSequence",
      "org.gmod.schema.utils.Rankable",
      "uk.ac.sanger.artemis.circular.Feature",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.io.EmblStreamSequence",
      "org.gmod.schema.utils.propinterface.PropertyI",
      "org.gmod.schema.dao.OrganismDaoI",
      "org.apache.log4j.spi.AppenderAttachable",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "org.apache.log4j.Priority",
      "org.biojava.bio.BioException",
      "org.apache.log4j.LogManager",
      "org.gmod.schema.sequence.FeatureLoc",
      "uk.ac.sanger.artemis.io.DocumentEntry",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithTransparency",
      "uk.ac.sanger.artemis.circular.DNADraw$5",
      "uk.ac.sanger.artemis.io.LocationParseNode",
      "uk.ac.sanger.artemis.io.BlastStreamFeature",
      "org.apache.log4j.DefaultCategoryFactory",
      "uk.ac.sanger.artemis.circular.DNADraw$6",
      "uk.ac.sanger.artemis.circular.DNADraw$3",
      "uk.ac.sanger.artemis.FeatureKeyPredicate",
      "uk.ac.sanger.artemis.circular.DNADraw$4",
      "org.apache.log4j.or.RendererMap",
      "uk.ac.sanger.artemis.util.WorkingGZIPInputStream",
      "uk.ac.sanger.artemis.circular.DNADraw$1",
      "uk.ac.sanger.artemis.io.OutOfDateException",
      "uk.ac.sanger.artemis.circular.DNADraw$2",
      "uk.ac.sanger.artemis.ExternalProgram",
      "uk.ac.sanger.artemis.SelectionChangeEvent",
      "uk.ac.sanger.artemis.io.ComparableFeature",
      "uk.ac.sanger.artemis.io.EmblMisc",
      "org.gmod.schema.general.DbXRef",
      "org.apache.xmlgraphics.java2d.GenericGraphicsDevice",
      "uk.ac.sanger.artemis.io.Key",
      "uk.ac.sanger.artemis.io.PartialSequence",
      "uk.ac.sanger.artemis.EntryGroupChangeEvent",
      "uk.ac.sanger.artemis.Options",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry",
      "uk.ac.sanger.artemis.Entry",
      "org.apache.batik.bridge.BridgeExtension",
      "org.apache.batik.bridge.BridgeContext",
      "uk.ac.sanger.artemis.io.FeatureHeader",
      "uk.ac.sanger.artemis.io.EmblStreamFeature",
      "uk.ac.sanger.artemis.io.QualifierParseException",
      "org.biojava.bio.symbol.IllegalSymbolException",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "org.apache.batik.bridge.UserAgent",
      "org.apache.batik.util.ParsedURL",
      "org.apache.log4j.CategoryKey",
      "uk.ac.sanger.artemis.io.Qualifier",
      "uk.ac.sanger.artemis.util.InputStreamProgressListener",
      "uk.ac.sanger.artemis.FeatureKeyQualifierPredicate",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "uk.ac.sanger.artemis.io.DocumentEntryAutosaveThread",
      "uk.ac.sanger.artemis.ChangeListener",
      "uk.ac.sanger.artemis.sequence.Marker",
      "org.apache.log4j.helpers.Loader",
      "org.apache.log4j.ProvisionNode",
      "uk.ac.sanger.artemis.io.GFFDocumentEntry",
      "uk.ac.sanger.artemis.io.GFFStreamFeature",
      "uk.ac.sanger.artemis.components.KeyChoice",
      "uk.ac.sanger.artemis.FilteredEntryGroup",
      "org.apache.batik.gvt.event.EventDispatcher",
      "uk.ac.sanger.artemis.io.QualifierInfoException",
      "uk.ac.sanger.artemis.circular.ScrollPanel",
      "uk.ac.sanger.artemis.components.QualifierChoice",
      "org.gmod.schema.dao.SequenceDaoI",
      "org.apache.log4j.spi.RootLogger",
      "uk.ac.sanger.artemis.EntryVector",
      "org.apache.log4j.spi.ErrorHandler",
      "uk.ac.sanger.artemis.ExternalProgramException",
      "uk.ac.sanger.artemis.io.QualifierVector",
      "org.apache.log4j.spi.RendererSupport",
      "uk.ac.sanger.artemis.FeatureChangeListener",
      "uk.ac.sanger.artemis.FeatureChangeEvent",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "uk.ac.sanger.artemis.util.FileDocument",
      "org.gmod.schema.sequence.FeatureCvTerm",
      "uk.ac.sanger.artemis.io.LineGroup",
      "uk.ac.sanger.artemis.Entry$FeatureEnumerator",
      "uk.ac.sanger.artemis.circular.GCGraph",
      "org.apache.batik.bridge.ErrorConstants",
      "uk.ac.sanger.artemis.io.DatabaseStreamFeature",
      "uk.ac.sanger.artemis.io.IndexedGFFDocumentEntry",
      "org.gmod.schema.dao.CvDaoI",
      "uk.ac.sanger.artemis.io.InvalidKeyException",
      "org.apache.log4j.Logger",
      "uk.ac.sanger.artemis.FeatureSegment",
      "uk.ac.sanger.artemis.circular.TextFieldSink",
      "uk.ac.sanger.artemis.EntryGroup",
      "uk.ac.sanger.artemis.io.Feature",
      "org.apache.log4j.helpers.LogLog",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "uk.ac.sanger.artemis.util.ByteBuffer",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "org.apache.log4j.spi.RepositorySelector",
      "uk.ac.sanger.artemis.circular.DNADraw",
      "uk.ac.sanger.artemis.io.StreamSequence",
      "uk.ac.sanger.artemis.io.Range",
      "uk.ac.sanger.artemis.sequence.Bases",
      "uk.ac.sanger.artemis.EntryGroupChangeListener",
      "uk.ac.sanger.artemis.components.LogViewer",
      "uk.ac.sanger.artemis.ActionController",
      "uk.ac.sanger.artemis.io.BetweenRange",
      "uk.ac.sanger.artemis.ExternalProgramMonitor",
      "uk.ac.sanger.artemis.io.Entry",
      "org.apache.log4j.or.DefaultRenderer",
      "uk.ac.sanger.artemis.util.ProgressInputStream",
      "uk.ac.sanger.artemis.circular.Graph",
      "uk.ac.sanger.artemis.io.FeatureVector",
      "org.apache.log4j.spi.ThrowableRendererSupport",
      "uk.ac.sanger.artemis.circular.TextFieldFloat",
      "org.apache.log4j.PropertyConfigurator",
      "uk.ac.sanger.artemis.util.Document",
      "org.apache.commons.logging.impl.Log4JLogger",
      "org.gmod.schema.organism.Organism",
      "org.apache.batik.bridge.FontFamilyResolver",
      "org.apache.log4j.Appender",
      "uk.ac.sanger.artemis.components.FileViewer",
      "uk.ac.sanger.artemis.Selection",
      "uk.ac.sanger.artemis.chado.ChadoTransaction",
      "uk.ac.sanger.artemis.sequence.NoSequenceException",
      "uk.ac.sanger.artemis.FeaturePredicate",
      "uk.ac.sanger.artemis.Logger",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.circular.TrackManager$3",
      "uk.ac.sanger.artemis.FeatureEnumeration",
      "uk.ac.sanger.artemis.io.StreamFeatureTable",
      "uk.ac.sanger.artemis.SelectionChangeListener",
      "org.apache.log4j.spi.LoggerRepository",
      "org.gmod.schema.dao.PubDaoI",
      "uk.ac.sanger.artemis.components.Splash"
    );
  } 

  private static void resetClasses() {
    org.evosuite.runtime.classhandling.ClassResetter.getInstance().setClassLoader(DNADraw_ESTest_scaffolding.class.getClassLoader()); 

    org.evosuite.runtime.classhandling.ClassStateSupport.resetClasses(
      "uk.ac.sanger.artemis.circular.ScrollPanel",
      "uk.ac.sanger.artemis.circular.DNADraw",
      "uk.ac.sanger.artemis.circular.DNADraw$1",
      "uk.ac.sanger.artemis.circular.DNADraw$2",
      "uk.ac.sanger.artemis.circular.DNADraw$3",
      "uk.ac.sanger.artemis.circular.DNADraw$4",
      "uk.ac.sanger.artemis.circular.DNADraw$5",
      "uk.ac.sanger.artemis.circular.DNADraw$6",
      "uk.ac.sanger.artemis.circular.DNADraw$7",
      "uk.ac.sanger.artemis.circular.DNADraw$8",
      "uk.ac.sanger.artemis.circular.DNADraw$9",
      "uk.ac.sanger.artemis.circular.DNADraw$10",
      "uk.ac.sanger.artemis.circular.DNADraw$11",
      "uk.ac.sanger.artemis.circular.DNADraw$12",
      "uk.ac.sanger.artemis.circular.DNADraw$13",
      "uk.ac.sanger.artemis.circular.DNADraw$14",
      "uk.ac.sanger.artemis.circular.DNADraw$15",
      "uk.ac.sanger.artemis.circular.DNADraw$16",
      "uk.ac.sanger.artemis.circular.DNADraw$17",
      "uk.ac.sanger.artemis.circular.DNADraw$18",
      "uk.ac.sanger.artemis.circular.DNADraw$19",
      "uk.ac.sanger.artemis.circular.DNADraw$20",
      "uk.ac.sanger.artemis.circular.DNADraw$21",
      "uk.ac.sanger.artemis.circular.DNADraw$22",
      "uk.ac.sanger.artemis.circular.DNADraw$23",
      "uk.ac.sanger.artemis.circular.DNADraw$24",
      "uk.ac.sanger.artemis.circular.DNADraw$25",
      "uk.ac.sanger.artemis.circular.DNADraw$26",
      "uk.ac.sanger.artemis.circular.Block",
      "uk.ac.sanger.artemis.Selection",
      "uk.ac.sanger.artemis.FeatureVector",
      "uk.ac.sanger.artemis.util.FastVector",
      "uk.ac.sanger.artemis.FeatureSegmentVector",
      "uk.ac.sanger.artemis.io.RangeVector",
      "uk.ac.sanger.artemis.EntryVector",
      "uk.ac.sanger.artemis.SimpleEntryGroup",
      "uk.ac.sanger.artemis.ActionController",
      "uk.ac.sanger.artemis.ActionVector",
      "uk.ac.sanger.artemis.FilteredEntryGroup",
      "uk.ac.sanger.artemis.FilteredEntryGroup$1",
      "uk.ac.sanger.artemis.FilteredEntryGroup$2",
      "uk.ac.sanger.artemis.FilteredEntryGroup$3",
      "uk.ac.sanger.artemis.Entry",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry",
      "uk.ac.sanger.artemis.io.PublicDBDocumentEntry",
      "uk.ac.sanger.artemis.io.EmblDocumentEntry",
      "uk.ac.sanger.artemis.util.Document",
      "org.apache.log4j.Category",
      "org.apache.log4j.Logger",
      "org.apache.log4j.Hierarchy",
      "org.apache.log4j.spi.RootLogger",
      "org.apache.log4j.Priority",
      "org.apache.log4j.Level",
      "org.apache.log4j.or.DefaultRenderer",
      "org.apache.log4j.or.RendererMap",
      "org.apache.log4j.DefaultCategoryFactory",
      "org.apache.log4j.spi.DefaultRepositorySelector",
      "org.apache.log4j.helpers.OptionConverter",
      "org.apache.log4j.helpers.Loader",
      "org.apache.log4j.helpers.LogLog",
      "org.apache.log4j.PropertyConfigurator",
      "org.apache.log4j.LogManager",
      "org.apache.log4j.CategoryKey",
      "org.apache.log4j.ProvisionNode",
      "uk.ac.sanger.artemis.util.DatabaseDocument",
      "uk.ac.sanger.artemis.util.StringVector",
      "uk.ac.sanger.artemis.util.FileDocument",
      "uk.ac.sanger.artemis.util.InputStreamProgressListenerVector",
      "org.apache.log4j.AppenderSkeleton",
      "uk.ac.sanger.artemis.components.LogViewer",
      "org.apache.log4j.helpers.OnlyOnceErrorHandler",
      "uk.ac.sanger.artemis.components.Splash",
      "uk.ac.sanger.artemis.io.QualifierInfoVector",
      "uk.ac.sanger.artemis.io.KeyVector",
      "uk.ac.sanger.artemis.io.Key",
      "uk.ac.sanger.artemis.io.QualifierInfo",
      "uk.ac.sanger.artemis.io.SimpleEntryInformation",
      "uk.ac.sanger.artemis.io.QualifierInfoHash",
      "uk.ac.sanger.artemis.ExternalProgramVector",
      "uk.ac.sanger.artemis.ExternalProgram",
      "uk.ac.sanger.artemis.Options",
      "uk.ac.sanger.artemis.io.FeatureVector",
      "uk.ac.sanger.artemis.io.SimpleDocumentEntry$1",
      "uk.ac.sanger.artemis.Entry$FeatureEnumerator",
      "uk.ac.sanger.artemis.ChangeEvent",
      "uk.ac.sanger.artemis.EntryGroupChangeEvent",
      "uk.ac.sanger.artemis.circular.Track",
      "org.apache.xml.utils.UnImplNode",
      "org.apache.xalan.templates.ElemTemplateElement",
      "org.apache.xalan.templates.OutputProperties",
      "org.apache.xml.serializer.SerializerBase",
      "org.apache.xml.serializer.OutputPropertiesFactory",
      "org.apache.xml.serializer.OutputPropertiesFactory$1",
      "org.apache.batik.svggen.DefaultImageHandler",
      "org.apache.batik.svggen.ImageHandlerBase64Encoder",
      "org.apache.xmlgraphics.java2d.AbstractGraphicsConfiguration",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithTransparency",
      "uk.ac.sanger.artemis.io.BlastEntryInformation",
      "uk.ac.sanger.artemis.circular.BlockComparator",
      "org.apache.xmlgraphics.java2d.AbstractGraphics2D",
      "org.apache.xmlgraphics.java2d.DefaultGraphics2D",
      "uk.ac.sanger.artemis.circular.Graph",
      "uk.ac.sanger.artemis.circular.GCSkewGraph",
      "uk.ac.sanger.artemis.circular.GCGraph",
      "org.apache.batik.ext.awt.g2d.GraphicContext",
      "org.apache.batik.svggen.DefaultExtensionHandler",
      "org.apache.batik.ext.awt.g2d.AbstractGraphics2D",
      "org.apache.batik.svggen.SVGGraphics2D",
      "org.apache.batik.svggen.SVGGeneratorContext",
      "org.apache.batik.svggen.SVGIDGenerator",
      "org.apache.batik.svggen.SimpleImageHandler",
      "org.apache.batik.svggen.DefaultStyleHandler",
      "org.apache.batik.svggen.DefaultErrorHandler",
      "org.apache.batik.svggen.DOMTreeManager",
      "org.apache.xml.res.XMLMessages",
      "org.apache.xpath.res.XPATHMessages",
      "org.apache.xalan.res.XSLMessages",
      "org.apache.xalan.res.XSLTErrorResources",
      "org.apache.xalan.res.XSLTErrorResources_en",
      "org.apache.batik.bridge.AbstractSVGBridge",
      "org.apache.batik.bridge.SVGAnimationElementBridge",
      "org.apache.batik.bridge.SVGAnimateElementBridge",
      "org.apache.batik.bridge.SVGAnimateColorElementBridge",
      "uk.ac.sanger.artemis.FeatureKeyQualifierPredicate",
      "uk.ac.sanger.artemis.FeatureKeyPredicate",
      "uk.ac.sanger.artemis.circular.Wizard",
      "org.apache.xalan.templates.DecimalFormatProperties",
      "org.apache.batik.svggen.AbstractImageHandlerEncoder",
      "org.apache.batik.svggen.ImageHandlerJPEGEncoder",
      "org.apache.batik.svggen.SVGGraphics2DRuntimeException",
      "org.apache.xalan.templates.ElemUse",
      "org.apache.xalan.templates.ElemAttributeSet",
      "org.apache.xalan.transformer.DecimalToRoman",
      "org.apache.xalan.templates.ElemNumber",
      "uk.ac.sanger.artemis.circular.Feature",
      "org.apache.batik.svggen.SVGGraphicObjectConverter",
      "org.apache.batik.svggen.SVGShape",
      "org.apache.batik.svggen.SVGArc",
      "org.apache.batik.svggen.SVGEllipse",
      "org.apache.batik.svggen.SVGLine",
      "org.apache.batik.svggen.SVGPath",
      "org.apache.batik.svggen.SVGPolygon",
      "org.apache.batik.svggen.SVGRectangle",
      "org.apache.xalan.templates.ElemPI",
      "org.apache.xalan.templates.ElemIf",
      "uk.ac.sanger.artemis.io.QualifierVector",
      "uk.ac.sanger.artemis.io.Qualifier",
      "uk.ac.sanger.artemis.io.Range",
      "uk.ac.sanger.artemis.io.Location",
      "uk.ac.sanger.artemis.io.EMBLObject",
      "uk.ac.sanger.artemis.io.LocationParseNode",
      "uk.ac.sanger.artemis.io.LineGroup",
      "uk.ac.sanger.artemis.io.SimpleDocumentFeature",
      "uk.ac.sanger.artemis.io.PublicDBStreamFeature",
      "uk.ac.sanger.artemis.io.EmblStreamFeature",
      "uk.ac.sanger.artemis.Feature",
      "org.apache.batik.gvt.text.GVTAttributedCharacterIterator$TextAttribute",
      "uk.ac.sanger.artemis.circular.TrackManager",
      "uk.ac.sanger.artemis.circular.TrackManager$3",
      "org.apache.xalan.processor.TransformerFactoryImpl",
      "org.apache.xalan.processor.StylesheetHandler",
      "org.apache.xpath.Expression",
      "org.apache.xpath.functions.Function",
      "org.apache.xpath.functions.FuncCurrent",
      "org.apache.xpath.functions.FuncLast",
      "org.apache.xpath.functions.FuncPosition",
      "org.apache.xpath.functions.FunctionOneArg",
      "org.apache.xpath.functions.FuncCount",
      "org.apache.xpath.functions.FuncId",
      "org.apache.xpath.functions.Function2Args",
      "org.apache.xalan.templates.FuncKey",
      "org.apache.xpath.functions.FunctionDef1Arg",
      "org.apache.xpath.functions.FuncLocalPart",
      "org.apache.xpath.functions.FuncNamespace",
      "org.apache.xpath.functions.FuncQname",
      "org.apache.xpath.functions.FuncGenerateId",
      "org.apache.xpath.functions.FuncNot",
      "org.apache.xpath.functions.FuncTrue",
      "org.apache.xpath.functions.FuncFalse",
      "org.apache.xpath.functions.FuncBoolean",
      "org.apache.xpath.functions.FuncLang",
      "org.apache.xpath.functions.FuncNumber",
      "org.apache.xpath.functions.FuncFloor",
      "org.apache.xpath.functions.FuncCeiling",
      "org.apache.xpath.functions.FuncRound",
      "org.apache.xpath.functions.FuncSum",
      "org.apache.xpath.functions.FuncString",
      "org.apache.xpath.functions.FuncStartsWith",
      "org.apache.xpath.functions.FuncContains",
      "org.apache.xpath.functions.FuncSubstringBefore",
      "org.apache.xpath.functions.FuncSubstringAfter",
      "org.apache.xpath.functions.FuncNormalizeSpace",
      "org.apache.xpath.functions.Function3Args",
      "org.apache.xpath.functions.FuncTranslate",
      "org.apache.xpath.functions.FunctionMultiArgs",
      "org.apache.xpath.functions.FuncConcat",
      "org.apache.xpath.functions.FuncSystemProperty",
      "org.apache.xpath.functions.FuncExtFunctionAvailable",
      "org.apache.xpath.functions.FuncExtElementAvailable",
      "org.apache.xpath.functions.FuncSubstring",
      "org.apache.xpath.functions.FuncStringLength",
      "org.apache.xpath.functions.FuncDoclocation",
      "org.apache.xpath.functions.FuncUnparsedEntityURI",
      "org.apache.xpath.compiler.FunctionTable",
      "org.apache.xalan.processor.XSLTElementDef",
      "org.apache.xalan.processor.XSLTSchema",
      "org.apache.xalan.processor.XSLTAttributeDef",
      "org.apache.xml.utils.StringToIntTable",
      "org.apache.xalan.processor.XSLTElementProcessor",
      "org.apache.xalan.processor.ProcessorCharacters",
      "org.apache.xalan.templates.ElemTextLiteral",
      "org.apache.xalan.processor.ProcessorTemplateElem",
      "org.apache.xalan.processor.ProcessorLRE",
      "org.apache.xalan.templates.ElemLiteralResult",
      "org.apache.xalan.processor.ProcessorUnknown",
      "org.apache.xalan.templates.ElemUnknown",
      "org.apache.xalan.templates.ElemValueOf",
      "org.apache.xml.utils.QName",
      "org.apache.xalan.templates.ElemCopyOf",
      "org.apache.xalan.templates.ElemSort",
      "org.apache.xalan.templates.ElemWithParam",
      "org.apache.xalan.templates.ElemForEach",
      "org.apache.xalan.templates.ElemCallTemplate",
      "org.apache.xalan.templates.ElemApplyTemplates",
      "org.apache.xalan.templates.ElemApplyImport",
      "org.apache.xalan.templates.ElemWhen",
      "org.apache.xalan.templates.ElemOtherwise",
      "org.apache.xalan.templates.ElemChoose",
      "org.apache.xalan.templates.ElemElement",
      "org.apache.xalan.templates.ElemAttribute",
      "org.apache.xalan.templates.ElemVariable",
      "org.apache.xalan.templates.ElemParam",
      "org.apache.xalan.processor.ProcessorText",
      "org.apache.xalan.templates.ElemText",
      "org.apache.xalan.templates.ElemComment",
      "org.apache.xalan.templates.ElemCopy",
      "org.apache.xalan.templates.ElemMessage",
      "org.apache.xalan.templates.ElemFallback",
      "org.apache.xalan.processor.ProcessorExsltFunction",
      "org.apache.xalan.templates.ElemTemplate",
      "org.apache.xalan.templates.ElemExsltFunction",
      "org.apache.xalan.processor.ProcessorExsltFuncResult",
      "org.apache.xalan.templates.ElemExsltFuncResult",
      "org.apache.xalan.processor.ProcessorInclude",
      "org.apache.xalan.processor.ProcessorImport",
      "org.apache.xalan.processor.ProcessorPreserveSpace",
      "org.apache.xalan.processor.ProcessorStripSpace",
      "org.apache.xalan.processor.ProcessorOutputElem",
      "org.apache.xalan.processor.ProcessorKey",
      "org.apache.xalan.processor.ProcessorDecimalFormat",
      "org.apache.xalan.processor.ProcessorAttributeSet",
      "org.apache.xalan.processor.ProcessorGlobalVariableDecl",
      "org.apache.xalan.processor.ProcessorGlobalParamDecl",
      "org.apache.xalan.processor.ProcessorTemplate",
      "org.apache.xalan.processor.ProcessorNamespaceAlias",
      "org.apache.xalan.templates.ElemExtensionScript",
      "org.apache.xalan.templates.ElemExtensionDecl",
      "org.apache.xalan.processor.ProcessorStylesheetElement",
      "org.apache.xalan.processor.ProcessorStylesheetDoc",
      "org.apache.xml.utils.BoolStack",
      "org.apache.xalan.templates.FuncDocument",
      "org.apache.xalan.templates.FuncFormatNumb",
      "org.apache.xml.utils.DefaultErrorHandler",
      "org.apache.xalan.templates.Stylesheet",
      "org.apache.xalan.templates.StylesheetComposed",
      "org.apache.xalan.templates.StylesheetRoot",
      "org.apache.xpath.XPath",
      "org.apache.xpath.compiler.XPathParser",
      "org.apache.xpath.compiler.OpMap",
      "org.apache.xpath.compiler.Compiler",
      "org.apache.xml.utils.ObjectVector",
      "org.apache.xpath.compiler.Lexer",
      "org.apache.xpath.compiler.OpMapVector",
      "org.apache.xpath.compiler.Keywords",
      "org.apache.xpath.axes.WalkerFactory",
      "org.apache.xpath.objects.XObject",
      "org.apache.xpath.objects.XNumber",
      "org.apache.xpath.patterns.NodeTest",
      "org.apache.xpath.axes.PredicatedNodeTest",
      "org.apache.xpath.axes.LocPathIterator",
      "org.apache.xpath.axes.ChildIterator",
      "org.apache.xpath.axes.IteratorPool",
      "org.apache.xpath.patterns.StepPattern",
      "org.apache.xpath.patterns.UnionPattern",
      "org.apache.xpath.axes.SelfIteratorNoPredicate",
      "org.apache.xalan.transformer.TransformerImpl",
      "org.apache.xml.utils.ObjectPool",
      "org.apache.xml.serializer.SecuritySupport",
      "org.apache.xml.serializer.SecuritySupport$4",
      "org.apache.xml.serializer.ToStream",
      "org.apache.xml.serializer.ToTextStream",
      "org.apache.xml.utils.ObjectStack",
      "org.apache.xml.utils.NodeVector",
      "org.apache.xalan.transformer.KeyManager",
      "org.apache.xalan.trace.TraceManager",
      "org.apache.xml.dtm.DTMManager",
      "org.apache.xpath.XPathContext",
      "org.apache.xml.utils.IntVector",
      "org.apache.xml.utils.IntStack",
      "org.apache.xml.utils.XMLStringFactory",
      "org.apache.xpath.objects.XMLStringFactoryImpl",
      "org.apache.xml.dtm.ObjectFactory",
      "org.apache.xml.dtm.SecuritySupport",
      "org.apache.xml.dtm.SecuritySupport$4",
      "org.apache.xml.dtm.SecuritySupport$7",
      "org.apache.xml.dtm.SecuritySupport$1",
      "org.apache.xml.dtm.SecuritySupport$2",
      "org.apache.xml.dtm.SecuritySupport$3",
      "org.apache.xml.dtm.SecuritySupport$6",
      "org.apache.xml.dtm.ref.DTMManagerDefault",
      "org.apache.xml.dtm.ref.ExtendedType",
      "org.apache.xml.dtm.ref.ExpandedNameTable",
      "org.apache.xml.dtm.ref.ExpandedNameTable$HashEntry",
      "org.apache.xpath.SourceTreeManager",
      "org.apache.xpath.XPathContext$XPathExpressionContext",
      "org.apache.xpath.VariableStack",
      "org.apache.xalan.transformer.StackGuard",
      "org.apache.xalan.transformer.CountersTable",
      "org.apache.commons.logging.impl.Log4JLogger",
      "org.apache.xmlgraphics.java2d.GraphicsConfigurationWithoutTransparency",
      "org.apache.batik.bridge.UserAgentAdapter",
      "org.apache.batik.svggen.ImageHandlerPNGEncoder",
      "uk.ac.sanger.artemis.sequence.Bases",
      "uk.ac.sanger.artemis.sequence.Strand",
      "uk.ac.sanger.artemis.components.BasePlotGroup",
      "uk.ac.sanger.artemis.FeaturePredicateVector",
      "uk.ac.sanger.artemis.FeaturePredicateConjunction",
      "uk.ac.sanger.artemis.components.SelectionViewer",
      "org.apache.xml.utils.NamespaceSupport2",
      "org.apache.xml.utils.Context2",
      "uk.ac.sanger.artemis.circular.UserGraph",
      "uk.ac.sanger.artemis.util.LinePushBackReader",
      "org.apache.xml.serializer.ToSAXHandler",
      "org.apache.xml.serializer.ToHTMLSAXHandler",
      "org.apache.xml.serializer.AttributesImplSerializer",
      "org.apache.xml.serializer.ElemContext",
      "org.apache.batik.svggen.DefaultCachedImageHandler",
      "org.apache.batik.svggen.CachedImageHandlerBase64Encoder",
      "org.apache.batik.svggen.ImageCacher",
      "org.apache.batik.svggen.ImageCacher$Embedded",
      "org.apache.xalan.templates.WhiteSpaceInfo",
      "org.apache.xml.utils.ListingErrorHandler",
      "org.apache.xalan.templates.NamespaceAlias",
      "uk.ac.sanger.artemis.util.OutOfRangeException",
      "org.apache.batik.gvt.AbstractGraphicsNode",
      "org.apache.batik.gvt.CompositeGraphicsNode",
      "org.apache.batik.ext.awt.image.renderable.AbstractRable",
      "org.apache.batik.ext.awt.image.renderable.AbstractColorInterpolationRable",
      "org.apache.batik.ext.awt.image.renderable.ConvolveMatrixRable8Bit",
      "org.apache.batik.bridge.SVGDescriptiveElementBridge",
      "org.apache.batik.bridge.SVGDescElementBridge",
      "org.apache.batik.ext.awt.image.renderable.AffineRable8Bit",
      "org.apache.xml.res.XMLErrorResources",
      "org.apache.xml.res.XMLErrorResources_en",
      "uk.ac.sanger.artemis.plot.LineAttributes",
      "org.apache.batik.gvt.RootGraphicsNode",
      "org.apache.batik.ext.awt.image.rendered.AbstractRed",
      "org.apache.batik.ext.awt.image.rendered.FloodRed",
      "org.apache.batik.ext.awt.image.GraphicsUtil",
      "org.apache.batik.ext.awt.image.rendered.AbstractTiledRed",
      "org.apache.batik.bridge.AnimatableSVGBridge",
      "org.apache.batik.bridge.AbstractGraphicsNodeBridge",
      "org.apache.batik.bridge.SVGShapeElementBridge",
      "org.apache.batik.bridge.SVGDecoratedShapeElementBridge",
      "org.apache.batik.bridge.SVGPathElementBridge",
      "uk.ac.sanger.artemis.sequence.Marker",
      "uk.ac.sanger.artemis.io.StreamSequence",
      "uk.ac.sanger.artemis.io.RawStreamSequence",
      "uk.ac.sanger.artemis.io.FastaStreamSequence",
      "org.apache.batik.gvt.ImageNode",
      "org.emboss.jemboss.gui.Browser",
      "org.emboss.jemboss.JembossParams",
      "org.apache.batik.gvt.CanvasGraphicsNode",
      "uk.ac.sanger.artemis.io.GFFEntryInformation",
      "uk.ac.sanger.artemis.io.EmblStreamSequence",
      "uk.ac.sanger.artemis.io.GenbankStreamSequence",
      "uk.ac.sanger.artemis.io.Packing",
      "uk.ac.sanger.artemis.sequence.SequenceChangeEvent",
      "org.apache.batik.css.engine.StyleSheet",
      "org.apache.batik.css.engine.MediaRule",
      "org.apache.batik.css.engine.ImportRule",
      "org.apache.xalan.transformer.XalanTransformState",
      "uk.ac.sanger.artemis.SimpleGotoEventSource",
      "org.apache.xml.serializer.ToHTMLStream$Trie",
      "org.apache.xml.serializer.ToHTMLStream$Trie$Node",
      "org.apache.xml.serializer.ElemDesc",
      "org.apache.xml.serializer.utils.StringToIntTable",
      "org.apache.xml.serializer.ToHTMLStream",
      "org.apache.xml.serializer.ToStream$BoolStack",
      "org.apache.xml.serializer.EncodingInfo",
      "org.apache.xml.serializer.CharInfo",
      "org.apache.xml.serializer.CharInfo$1",
      "org.apache.xml.serializer.CharInfo$CharKey",
      "org.apache.xml.serializer.NamespaceMappings",
      "org.apache.xml.serializer.NamespaceMappings$Stack",
      "org.apache.xml.serializer.NamespaceMappings$MappingRecord",
      "org.apache.xmlgraphics.java2d.GenericGraphicsDevice",
      "org.apache.xalan.templates.ElemEmpty"
    );
  }
}
