# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:91098-143959 (52862bp) -----
#
# start gene g4
chr6	AUGUSTUS	gene	92113	95096	.	-	.	g4
chr6	AUGUSTUS	transcript	92113	95096	.	-	.	g4.t1
chr6	AUGUSTUS	CDS	92113	92223	0.37	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92393	92574	0.99	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92765	92885	0.99	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92977	93174	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93273	93398	0.93	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93492	93608	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93679	93816	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93897	94030	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	94104	94310	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	94901	95096	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	start_codon	95094	95096	.	-	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MDGQLLLALLLLLLGASGLRGQGPGGPEEEPLEEEKVPEEDGILVLNQRNLGLALRAHRTLLVQFYAPWCGHCKALAP
# EYSKAAALLAAESAEARLAKVDGPAEAELTKEFAVTEYPTLKFFRDGNRTHPEEYTGPKEADGMAEWLRRRVGPSAMRLADAEGAQALIDSRDVVVIG
# FFRDRQDEDVATFLALAQDALDMTFGLTDQPKLFEKFGVAKDTIVLFKKFDEGRADFPVDEELGLDQGDLSRFLLTHSMHLVTEFNSQTSPKIFAARI
# LNHLLLFVNQTLAEHRELLEGFGEAAPPFRGQVLFVVVDVGASNAHVLQYFGLKAEEAPALRIINMETTKKYAPVGGGPLTAAAVATFCHAVLSGQVK
# PYLLSQDVPPDWDRRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKAMAAAWEALAEKYKDHEDIVIAELDATANELEAFPVHGFPTLKYFPAGP
# GRKVIEYKSTRDVETFSKFLDNGGELPAEEPTEEPTAPFP]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/10
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 0
# end gene g4
###
# start gene g3
chr6	AUGUSTUS	gene	95402	98196	.	-	.	g3
chr6	AUGUSTUS	transcript	95402	98196	.	-	.	g3.t1
chr6	AUGUSTUS	stop_codon	95402	95404	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95402	95601	1	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95675	95738	0.96	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95814	95890	0.96	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95972	96055	1	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	96129	96308	0.68	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	98175	98196	0.71	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	start_codon	98194	98196	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MALLWGAVLLTDKEGRQLPPDEALDEAVPEYRAPGRKSLQELQQLDPEDESLAKYKQTLLGPLPPVVDESLPNVQVTR
# LTLMSEQAPGPITMDLTGELAALQGQVFVLKEGVDYKVKITFKVNREIVSGLKCVHHTYRQGLRVDKAVYMVGSYGPRAQEYEFVTPVEEAPRGALVR
# GAYVVTSFFTDDDRTDHLSWEWGLHICQDWKS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 0
# end gene g3
###
# start gene g2
chr6	AUGUSTUS	gene	99298	106602	.	+	.	g2
chr6	AUGUSTUS	transcript	99298	106602	.	+	.	g2.t1
chr6	AUGUSTUS	start_codon	99298	99300	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99298	99342	0.26	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99626	99722	0.24	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99813	99863	0.94	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99987	100093	0.81	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	100728	100779	0.52	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	100892	100950	0.51	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	101151	101227	0.64	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	101389	101470	0.2	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	102378	102449	0.03	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103289	103318	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103394	103455	0.03	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103553	103666	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103751	103866	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103952	104039	0.34	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	104284	104422	0.03	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	106315	106397	0.52	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	106479	106602	0.45	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	106600	106602	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAGGRAGAQLPHLSKMERVVVSMQDPDQGVKMRSQRLLITVIPHTVAGGDIAEWLIQKYCLSEEEALHLGTLLVQHGY
# LYPLRDPRSLVLRPDDTPYRFQTPYFWTSTLGPATELDYAIYLAKKNIRKQGALVGHEKEHYDQLHRKMNHAWDLVVVQAREQLRAAKQRRKGDRLVI
# ACQERTYWLVNRPPPGIPSVLEQGPERSSCAAAGRAQLTQSPEFYRQEVERCRKALARARVKSSVCLEAYLNFSSQRGPHDPFLSGCLPSNPWVTDDD
# TYWTVNAPSVAVPTKLRVERWGFSFQELLGDPVGRAHFLAFLGTEFSAENLSFWEACEELRYGGQAQVPALVDSVYQQFLAPGAARWVNVDSRTMEST
# LAGLRRPHRYVLDDAQLHIYMLMKKDSYPRFLKSAAYRDLLAVAVVPAEARRRAFPFLRKPPHPSPSPTLLPASTSAEPVTAASDPACGDRGT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/17
# CDS introns: 0/16
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#     RM:   8 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	108926	118133	.	-	.	g1
chr6	AUGUSTUS	transcript	108926	118133	.	-	.	g1.t1
chr6	AUGUSTUS	stop_codon	108926	108928	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	108926	109137	0.85	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	109225	109327	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	109759	109923	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	110107	110182	1	-	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	110527	110667	0.93	-	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	110827	110956	0.92	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	111170	111302	0.99	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	111604	111734	0.88	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	112817	113008	1	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	113264	113380	0.88	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	117869	118133	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	start_codon	118131	118133	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MDSKDLEAEIHPLRNEDKRLPETPGNPGHADEKLKSSPRQPRLSRCRTVVFFLSLFVCLFVVFVVSFIIPCPERPVSQ
# GMWRIDYSAAVTYDFLATEDINRDRIQDVLFLYKNANGSNNFNLSCTDEGFSSPCTFVAAVSGASGSVLWERPAAQDGALVRCSVPQTQGSRMSSACI
# LVGRPSSFVAVDLFTGETLWSQPPGFDRNTSDLSSLLQLPDVDADGAPDLLLLAQEDKEVSSYLYSGSTGRQIGHRGSLGVGGTAGSLLHVTRAGAHY
# ILFPCPSSLCGCSVKGLHEAATGGASPLRRDLLWERMLNTTPHGPLGRSPGALRHLTHVPGKAGEDLLLVTSEACVLLDGQDLTPRWTFRTAQVFRKP
# ILGHYKPDTPAVVIENGTGTNRQILLLDLGSGAILWNQALPGLPGDPQSASLPTADHRSAFFFWGLHELSELSGTNQTRPQDAQHSLYMFHPTLPGVL
# LELANISANIVSFQAVLFEPSRHAACVLLMGPAGPDTPGTVSVAKHKVQDLVPGSRVVRLAEGGPDTDQAVRDRFSRLRYRSEA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#     RM:   8 
# incompatible hint groups: 0
# end gene g1
###
