# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:59396-92270 (32875bp) -----
#
# start gene g2
chr17	AUGUSTUS	gene	68702	90123	.	+	.	g2
chr17	AUGUSTUS	transcript	68702	90123	.	+	.	g2.t1
chr17	AUGUSTUS	CDS	68702	68842	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	77552	77648	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	79239	79376	0.55	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	82766	83283	0.63	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	83636	83806	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	85048	85293	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	87578	87685	0.9	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	89001	89168	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	89997	90123	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	stop_codon	90121	90123	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [YGSWREPVNPYYVNSGYALAPATSANDSEQQSLSSDADTLSLTDSSVDGIPPYRIRKQHRREMQESIQVNGRVPLPHI
# PRTYRMPKEIRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMEEEGEDGEMPSGPMASHKLPSVPAWHHFPPRYVDMGCSGLRDAHEENPESI
# LDEHVQRVMRTPGCQSPGPGHRSPDSGHVAKTAVLGGTASGHGKHVPKLGLKLDTAGLHHHRHVHHHVHHNSARPKEQMEAEVARRVQSSFSWGPETH
# GHAKPRSYSENAGTTLSAGDLAFGGKTSAPSKRNTKKAESGKNANAEVPSTTEDAEKNQKIMQWIIEGEKEISRHRKAGHGSSGLRKQQAHESSRPLS
# IERPGAVHPWVSAQLRNSVQPSHLFIQDPTMPPNPAPNPLTQLEEARRRLEEEEKRANKLPSKQRYVQAVMQRGRTCVRPACAPVLSVVPAVSDLELS
# ETETKSQRKAGGGSAPPCDSIVVAYYFCGEPIPYRTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVREDEAVLPVFEEKIIGKVEK
# VD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/9
# CDS introns: 0/9
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 41
#     RM:  41 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr17	AUGUSTUS	gene	91144	92139	.	-	.	g1
chr17	AUGUSTUS	transcript	91144	92139	.	-	.	g1.t1
chr17	AUGUSTUS	stop_codon	91144	91146	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	91144	91188	0.01	-	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	91482	91663	0.95	-	2	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	91744	91864	0.85	-	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	91954	92139	0.41	-	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	start_codon	92137	92139	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MVDVAADNSHVLNYFGLKAEEAPTLRLINVETTKKYAPTGVIAITAASVAAFCQAVLHGEIKHYLLSQEIPPDWDQGP
# VKTLVSKNFEQVAFDETKNVFVKFYAPWCSHCKEMAPAWEALAEKYKDREDIVIAELDATANELEAFSVLGYPTLKFFPAGPDRKEAQANSTLGPKEE
# L]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/4
# CDS introns: 0/3
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g1
###
