# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'mm10' -----
#
#----- prediction on sequence range chr17:1-61395 (61395bp) -----
#
# start gene g3
chr17	AUGUSTUS	gene	1390	17296	.	+	.	g3
chr17	AUGUSTUS	transcript	1390	17296	.	+	.	g3.t1
chr17	AUGUSTUS	start_codon	1390	1392	.	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	1390	1528	0.68	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	11821	11995	1	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12081	12288	0.77	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12473	12600	0.98	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	12801	13069	0.28	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	13172	13491	0.11	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	13924	14014	0.9	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	14095	14218	0.93	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	14461	14597	0.95	+	1	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	15346	15524	0.97	+	2	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	15601	15747	0.24	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	16602	16718	0.99	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	CDS	17000	17296	0.91	+	0	transcript_id "g3.t1"; gene_id "g3";
chr17	AUGUSTUS	stop_codon	17294	17296	.	+	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MEVSGRITEYQVFYDMSVLSLPLLTSPLTPYCQVTLSQGKVRLLSEEAGLVSEHFSQAPQKLSFYSWYGSTRLFHFRV
# PPDTVLLRWLLHVSQGSPSCTDEEITVHFRYGAPPVINPLGTSFPDNTLSHASFHIRALLSTLMLDNTSVNISHPAPGDWFLVAHLPPSSQKIQVKGF
# VPTCAYIFQPDMLVMRVVEVSTLEPDVPLPQTLLSYPSYLKIFVPEYTQELRLELQGCVSSVSPGCPVRVTVGATTLPRNFQRVLTCTGLAPSCHLLL
# SSPPWGRWLQVTFESLAEPHVTVGFTAKAVFTVCRPWSVTIHHLIQNNPNQTYDTSAIQLSQSAVHRDLGRSSRVDSGPFCLLNYPVLREDTDVVSVH
# FQPLNGAFVLVHSSMPSVMQLRLDTGMDSGGSFIIVLRTNKTEVTNGTLVAACVNAASPFLSFNTSLNCTTAFFQGYPMFLRASSHMANLIMPFPETD
# NWYLSLQLVCPESPEDCEQAVVRVETILYLVPCLNDCGPYGQCLLLRRYGYVYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPIA
# ISLHRSFLVEASVYFYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGASTWVTILCMARLKTILKQVLLVLGTLVIAMSLQMDRRGIWNLMGP
# CVFAFVIMASMWIYRCGHRGQCYPTSWQRWVFYLLPGISMASVGIAMYTSMMTSDNYYYTHSIWHILLAGSAAFLLPPREEKAGSWACLQKFPCHYQI
# CRNDRDELYTVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/13
# CDS introns: 0/12
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 24
#     RM:  24 
# incompatible hint groups: 0
# end gene g3
###
# start gene g2
chr17	AUGUSTUS	gene	18624	21443	.	+	.	g2
chr17	AUGUSTUS	transcript	18624	21443	.	+	.	g2.t1
chr17	AUGUSTUS	start_codon	18624	18626	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	18624	18911	0.94	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	19618	19770	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	20319	20453	0.15	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	20540	20626	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	CDS	21333	21443	0.53	+	0	transcript_id "g2.t1"; gene_id "g2";
chr17	AUGUSTUS	stop_codon	21441	21443	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MPLHRYPVHLWQKLRLRQGICARLPAHFLRSLEEERTPTPVHYKPHGTKFKINPKNGQRERVEDVPIPVHYPPESQQG
# LWGGEGLILGYRYANNDKLSKRVKKVWKPQLFTRELYSEILDKKFTVTVTMRTLDLIDEAYGFDFYILKTPKEDLGSKFGMDLKRGMLLRLARQDPHL
# HPENPERRAAIYDKYRSFVIPEAEAEWVGLTLEEALEKQRLLEEKDPVPLFKVYVEELVQRLQEQVLSRPAVVQKRAGDHA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/5
# CDS introns: 0/4
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 0
# end gene g2
###
# start gene g1
chr17	AUGUSTUS	gene	37761	38638	.	+	.	g1
chr17	AUGUSTUS	transcript	37761	38638	.	+	.	g1.t1
chr17	AUGUSTUS	start_codon	37761	37763	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr17	AUGUSTUS	CDS	37761	38638	0.06	+	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MNVQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDSRPVNHSFCSGKGTSIKSETSTATPRRSDLDLGYEPEGSASP
# TPPYLRWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACSGFRKLEPCDSNEEKRLKLARAIYRKYILDSNGIVSRQTKPATKSFIKDCVMKQQ
# IDPAMFDQAQTEIQSTMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQSSGSGTGKGMSGYLPTLNEDEEWKCDQDADEDDGRDPLPPSRLTQKLLLE
# TAAPRAPSSRRYNEGREL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/1
# CDS introns: 0/0
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g1
###
