# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'hg38' -----
#
#----- prediction on sequence range chr16:1-51000 (51000bp) -----
#
# start gene g1
chr16	AUGUSTUS	gene	1	42376	0	-	.	g1
chr16	AUGUSTUS	transcript	1	42376	.	-	.	g1.t1
chr16	AUGUSTUS	tts	1	1	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	1	2376	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	stop_codon	2235	2237	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	2235	2376	1	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	3005	3172	1	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	3005	3172	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	3578	3607	1	-	1	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	3578	3607	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	5964	6052	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	5964	6052	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	12099	12275	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	12099	12275	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	19041	19184	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	19041	19184	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	21115	21225	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	21115	21225	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	33686	33784	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	33686	33784	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	40279	40373	.	-	2	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	40279	40373	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	CDS	42316	42376	0.85	-	0	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	exon	42316	42376	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr16	AUGUSTUS	start_codon	42374	42376	.	-	0	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKER
# DLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNS
# MPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRD
# RRRRRSRSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYKFSRERASREESWESGRSERGPPDWRLESSNGKMASRRSEEKEAGEI]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 94.4
# CDS exons: 10/10
#      W:  10 
# CDS introns: 6/7
#      E:   6 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 1/1
#      W:   1 
# hint groups fully obeyed: 203
#      E:   6 
#     RM:  22 
#      W: 175 
# incompatible hint groups: 300
#      E:   7 
#     RM:  13 
#      W: 280 
# end gene g1
###
# start gene g2
chr16	AUGUSTUS	gene	44505	47779	0	-	.	g2
chr16	AUGUSTUS	transcript	44505	47779	.	-	.	g2.t1
chr16	AUGUSTUS	tts	44505	44505	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	44505	44989	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	exon	47360	47779	.	-	.	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	stop_codon	47462	47464	.	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	CDS	47462	47779	0.56	-	0	transcript_id "g2.t1"; gene_id "g2";
chr16	AUGUSTUS	start_codon	47777	47779	.	-	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MLRLLGNGDLGRCLRREPGGVLFVAVAMDAERPRPSSFPSPLRPRSSPSSFPSFSASSLPSSSSPDLVLFPPSFLTST
# PDLRPRPRFRVLSPVFLLFDHEENCWH]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 75
# CDS exons: 1/1
#      W:   1 
# CDS introns: 0/1
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 2/2
#      W:   2 
# hint groups fully obeyed: 85
#     RM:   6 
#      W:  79 
# incompatible hint groups: 29
#      E:   1 
#      W:  28 
# end gene g2
###
