# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'galGal4' -----
#
#----- prediction on sequence range chr14:1-23657 (23657bp) -----
#
# start gene g2
chr14	AUGUSTUS	gene	1060	10531	.	+	.	g2
chr14	AUGUSTUS	transcript	1060	10531	.	+	.	g2.t1
chr14	AUGUSTUS	CDS	1060	1237	0.48	+	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	1060	1237	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	2255	2462	0.54	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	2255	2462	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	2553	2686	0.99	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	2553	2686	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	3085	3350	0.92	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	3085	3350	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	4510	4820	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	4510	4820	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	5593	5686	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	5593	5686	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	5988	6111	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	5988	6111	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	6864	7000	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	6864	7000	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	8438	8616	1	+	2	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	8438	8616	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	9080	9226	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	9080	9226	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	9680	9796	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	9680	9796	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	CDS	10235	10531	1	+	0	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	exon	10235	10531	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr14	AUGUSTUS	stop_codon	10529	10531	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [SLFVSEYFSQSAQRLSFYSWYGNAKVFHFHVPEDTVLLRWLLQASRGKEPECTSMEVTVHFRYGAPPVINPLGTHFPA
# NATVRPSYNISITLSSAVQNTTFVNITTPAAGDWFIAAHLPEAAGRIEVKGFSTPCTYMFQADMFVLRLTDMPVLEPGVAMPQTIVSPAKPLHVKVFV
# PKYTARMWFELRSCMTSERKACTVRVVLGSITLPQSFQRIITCTGNVNCSVSLDSLPWEKWLQIMVESLGIANASVSLEMLASFTDCRPGSTSSFLNF
# SSLNQSQAGSGPGSPTPSTGMALRNTSDQRSFCLQNQPVVREDLDVVSVRYRLLNGPSVAVYSISPTLLLLNLNSGMDSGGSLVVNLLLNKTSLSQAN
# ATVVACVSAASPVLSLNTTQNCSTAFFQGYPLSLSTSSAEAMLIVLYPQTDDWFLSLQLICPKGQSECNTAEAKVTVIAYLTPCFNDCGPYGQCSLLR
# RHGYLYAGCSCKAGWSGWSCTDDTKAQSVGAQNLATLLLTLSNLMFLPAIAVAVYRYYLVEASVYTYTMFFSTFYHACDQPGIAVMCIMDYDTLQYCD
# FLGSVVSIWVTILCMSRVKKILKYVLFVLGSLLIAMSLQLDRRGVWNMMGPCLFALIIMISAWVYHGVKRRHCYPSSWKRWVFYLLPGITLAFIAISV
# YAFMETNENYYYTHSIWHVLVAGSVAFLLPPRDKHKKPWAWSQKLTCRYQICQNDREELYAVT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 62.5
# CDS exons: 8/12
#      W:   8 
# CDS introns: 7/12
#      E:   7 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 25
#      E:   7 
#     RM:  18 
# incompatible hint groups: 138
#     RM:   3 
#      W: 135 
# end gene g2
###
# start gene g1
chr14	AUGUSTUS	gene	13769	15376	.	+	.	g1
chr14	AUGUSTUS	transcript	13769	15376	.	+	.	g1.t1
chr14	AUGUSTUS	start_codon	13769	13771	.	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	13769	14056	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	13769	14056	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	14148	14300	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	14148	14300	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	14511	14645	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	14511	14645	.	+	.	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	CDS	15290	15376	1	+	0	transcript_id "g1.t1"; gene_id "g1";
chr14	AUGUSTUS	exon	15290	15376	.	+	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [MVLHKVPPRLWPKLRLQEGICARLPAHFLAQLNDDTQPTPVHWRPLGVRYRRNPRTGERERVQDVPVPVFLPRAADEG
# LWGGEGWIRGFRYANNDKLSTRVPKIWKPQLFKRQFYSEILDAKLTITVTMRTLDLIDQAYGFDFYILKTPKADMCSKLGMDLKRTMLLRLARRDPKL
# HPDDPARREAIYNKYREFVIPEEEAEWVGLSLEEAIEKQRLLEKK]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 87.5
# CDS exons: 4/4
#      W:   4 
# CDS introns: 3/4
#      E:   3 
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 8
#      E:   3 
#     RM:   5 
# incompatible hint groups: 57
#     RM:   1 
#      W:  56 
# end gene g1
###
