# This output was generated with AUGUSTUS (version 3.3.1).
# AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
#
#----- prediction for species 'canFam3' -----
#
#----- prediction on sequence range chr6:68814-112373 (43560bp) -----
#
# start gene g5
chr6	AUGUSTUS	gene	71165	91634	.	+	.	g5
chr6	AUGUSTUS	transcript	71165	91634	.	+	.	g5.t1
chr6	AUGUSTUS	CDS	71165	71261	0.52	+	1	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	71165	71261	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	79014	79151	0.87	+	0	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	79014	79151	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	82780	83309	1	+	0	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	82780	83309	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	84005	84175	0.98	+	1	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	84005	84175	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	86687	86932	0.99	+	1	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	86687	86932	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	88713	88820	0.78	+	1	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	88713	88820	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	90322	90489	1	+	1	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	90322	90489	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	CDS	90920	91046	1	+	1	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	exon	90920	91634	.	+	.	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	stop_codon	91044	91046	.	+	0	transcript_id "g5.t1"; gene_id "g5";
chr6	AUGUSTUS	tts	91634	91634	.	+	.	transcript_id "g5.t1"; gene_id "g5";
# protein sequence = [DGIPPYRIRKQHRREMQESVQVNGRVPLPHIPRTYRMPKEIRVEPQKFAAELIHRLEAIQRTREAEEKLEERLKRVRM
# EEEGEDGDVPSGPLGAIHKLPLAPAWHHFPPRYADVGCVGLRDAHEENPESILDEHVQRVMRTPGCQSPGPGHRSPDNAHVPKIVGVLGGVPSGHGKH
# APKSGAKLDTAGPHLHRHSHHHSHHSAARPKEQADAEAARRVQGSFAWGPELHGHTAKPRSHSESVGAAPNASDSLAYSGKAGTASRRNAKKAESGKN
# ASTEVPGPSEDTDKNQKIMQWIIEGEKEISRHRKAGHGSSGAKKQQVHESSRPLSVERPGAVHPWVSAQLRNSVQPSHLFIQDPTMPPNPAPNPLTQL
# EEARRRLEEEEKRASKLPSKQRYVQEVIQRGRSCIRPTCTPVLSVVPAVSDLELSETETKSQRKAGSGSAQPCDSIVVAYYFCGEPIPYRTLVRGRAV
# TLGQFKELLTKKGNYRYYFKKVSDEFDCGVVFEEVREDEAVLPVFEEKIIGKVEKVD]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/8
# CDS introns: 0/7
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 18
#     RM:  18 
# incompatible hint groups: 0
# end gene g5
###
# start gene g4
chr6	AUGUSTUS	gene	91857	95096	.	-	.	g4
chr6	AUGUSTUS	transcript	91857	95096	.	-	.	g4.t1
chr6	AUGUSTUS	tts	91857	91857	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	91857	92007	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	stop_codon	91963	91965	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	91963	92007	0.27	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92113	92223	0.21	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	92113	92223	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92393	92574	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	92393	92574	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92765	92885	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	92765	92885	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	92977	93174	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	92977	93174	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93273	93398	0.93	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	93273	93398	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93492	93608	.	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	93492	93608	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93679	93816	1	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	93679	93816	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	93897	94030	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	93897	94030	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	94104	94310	1	-	2	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	94104	94310	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	CDS	94901	95096	0.44	-	0	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	exon	94901	95096	.	-	.	transcript_id "g4.t1"; gene_id "g4";
chr6	AUGUSTUS	start_codon	95094	95096	.	-	0	transcript_id "g4.t1"; gene_id "g4";
# protein sequence = [MDGQLLLALLLLLLGASGLRGQGPGGPEEEPLEEEKVPEEDGILVLNQRNLGLALRAHRTLLVQFYAPWCGHCKALAP
# EYSKAAALLAAESAEARLAKVDGPAEAELTKEFAVTEYPTLKFFRDGNRTHPEEYTGPKEADGMAEWLRRRVGPSAMRLADAEGAQALIDSRDVVVIG
# FFRDRQDEDVATFLALAQDALDMTFGLTDQPKLFEKFGVAKDTIVLFKKFDEGRADFPVDEELGLDQGDLSRFLLTHSMHLVTEFNSQTSPKIFAARI
# LNHLLLFVNQTLAEHRELLEGFGEAAPPFRGQVLFVVVDVGASNAHVLQYFGLKAEEAPALRIINMETTKKYAPVGGGPLTAAAVATFCHAVLSGQVK
# PYLLSQDVPPDWDRRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKAMAAAWEALAEKYKDHEDIVIAELDATANELEAFPVHGFPTLKYFPAGP
# GRKVIEYKSTRDVETFSKFLDNGGELPAEEPTEEPTAPFPDTPANASAEPKEEL]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/11
# CDS introns: 0/10
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/1
# hint groups fully obeyed: 3
#     RM:   3 
# incompatible hint groups: 0
# end gene g4
###
# start gene g3
chr6	AUGUSTUS	gene	95402	97964	.	-	.	g3
chr6	AUGUSTUS	transcript	95402	97964	.	-	.	g3.t1
chr6	AUGUSTUS	stop_codon	95402	95404	.	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95402	95601	0.44	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	95402	95601	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95675	95738	0.92	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	95675	95738	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95814	95890	0.91	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	95814	95890	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	95972	96055	0.99	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	95972	96055	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	96129	96308	0.89	-	2	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	96129	96308	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	CDS	97778	97964	0.24	-	0	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	exon	97778	97964	.	-	.	transcript_id "g3.t1"; gene_id "g3";
chr6	AUGUSTUS	start_codon	97962	97964	.	-	0	transcript_id "g3.t1"; gene_id "g3";
# protein sequence = [MRKKRASGWGSPSSTQTLISLSQPEAGAALLPALGPPSAHPKVSLALRPETPSGLHPQDSALVLLTDKEGRQLPPDEA
# LDEAVPEYRAPGRKSLQELQQLDPEDESLAKYKQTLLGPLPPVVDESLPNVQVTRLTLMSEQAPGPITMDLTGELAALQGQVFVLKEGVDYKVKITFK
# VNREIVSGLKCVHHTYRQGLRVDKAVYMVGSYGPRAQEYEFVTPVEEAPRGALVRGAYVVTSFFTDDDRTDHLSWEWGLHICQDWKS]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/6
# CDS introns: 0/5
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 2
#     RM:   2 
# incompatible hint groups: 0
# end gene g3
###
# start gene g2
chr6	AUGUSTUS	gene	99298	106602	.	+	.	g2
chr6	AUGUSTUS	transcript	99298	106602	.	+	.	g2.t1
chr6	AUGUSTUS	start_codon	99298	99300	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99298	99342	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	99298	99342	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99626	99722	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	99626	99722	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99813	99863	0.99	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	99813	99863	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	99987	100093	0.86	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	99987	100093	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	100728	100779	0.54	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	100728	100779	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	100892	100950	0.6	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	100892	100950	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	101151	101227	0.7	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	101151	101227	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	101389	101470	0.24	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	101389	101470	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	102378	102449	0.03	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	102378	102449	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103289	103318	.	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	103289	103318	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103394	103455	0.09	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	103394	103455	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103553	103666	0.99	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	103553	103666	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103751	103866	1	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	103751	103866	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	103952	104039	0.99	+	2	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	103952	104039	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	104284	104422	0.62	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	104284	104422	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	106315	106397	0.7	+	0	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	106315	106397	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	CDS	106479	106602	0.66	+	1	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	exon	106479	106602	.	+	.	transcript_id "g2.t1"; gene_id "g2";
chr6	AUGUSTUS	stop_codon	106600	106602	.	+	0	transcript_id "g2.t1"; gene_id "g2";
# protein sequence = [MAGGRAGAQLPHLSKMERVVVSMQDPDQGVKMRSQRLLITVIPHTVAGGDIAEWLIQKYCLSEEEALHLGTLLVQHGY
# LYPLRDPRSLVLRPDDTPYRFQTPYFWTSTLGPATELDYAIYLAKKNIRKQGALVGHEKEHYDQLHRKMNHAWDLVVVQAREQLRAAKQRRKGDRLVI
# ACQERTYWLVNRPPPGIPSVLEQGPERSSCAAAGRAQLTQSPEFYRQEVERCRKALARARVKSSVCLEAYLNFSSQRGPHDPFLSGCLPSNPWVTDDD
# TYWTVNAPSVAVPTKLRVERWGFSFQELLGDPVGRAHFLAFLGTEFSAENLSFWEACEELRYGGQAQVPALVDSVYQQFLAPGAARWVNVDSRTMEST
# LAGLRRPHRYVLDDAQLHIYMLMKKDSYPRFLKSAAYRDLLAVAVVPAEARRRAFPFLRKPPHPSPSPTLLPASTSAEPVTAASDPACGDRGT]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/17
# CDS introns: 0/15
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 7
#     RM:   7 
# incompatible hint groups: 1
#     RM:   1 
# end gene g2
###
# start gene g1
chr6	AUGUSTUS	gene	108926	111734	.	-	.	g1
chr6	AUGUSTUS	transcript	108926	111734	.	-	.	g1.t1
chr6	AUGUSTUS	stop_codon	108926	108928	.	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	108926	109137	0.97	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	108926	109137	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	109225	109327	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	109225	109327	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	109759	109923	1	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	109759	109923	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	110107	110182	1	-	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	110107	110182	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	110527	110667	0.94	-	1	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	110527	110667	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	110827	110956	0.93	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	110827	110956	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	111170	111302	0.97	-	0	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	111170	111302	.	-	.	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	CDS	111604	111734	0.81	-	2	transcript_id "g1.t1"; gene_id "g1";
chr6	AUGUSTUS	exon	111604	111734	.	-	.	transcript_id "g1.t1"; gene_id "g1";
# protein sequence = [ETLWSQPPGFDRNTSDLSSLLQLPDVDADGAPDLLLLAQEDKEVSSYLYSGSTGRQIGHRGSLGVGGTAGSLLHVTRA
# GAHYILFPCPSSLCGCSVKGLHEAATGGASPLRRDLLWERMLNTTPHGPLGRSPGALRHLTHVPGKAGEDLLLVTSEACVLLDGQDLTPRWTFRTAQV
# FRKPILGHYKPDTPAVVIENGTGTNRQILLLDLGSGAILWNQALPGLPGDPQSASLPTADHRSAFFFWGLHELSELSGTNQTRPQDAQHSLYMFHPTL
# PGVLLELANISANIVSFQAVLFEPSRHAACVLLMGPAGPDTPGTVSVAKHKVQDLVPGSRVVRLAEGGPDTDQAVRDRFSRLRYRSEA]
# Evidence for and against this transcript:
# % of transcript supported by hints (any source): 0
# CDS exons: 0/8
# CDS introns: 0/8
# 5'UTR exons and introns: 0/0
# 3'UTR exons and introns: 0/0
# hint groups fully obeyed: 0
# incompatible hint groups: 0
# end gene g1
###
