// ***************************************************************************
// bamtools_merge.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 7 April 2011
// ---------------------------------------------------------------------------
// Merges multiple BAM files into one
// ***************************************************************************

#ifndef BAMTOOLS_MERGE_H
#define BAMTOOLS_MERGE_H

#include "bamtools_tool.h"

namespace BamTools {

class MergeTool : public AbstractTool
{

public:
    MergeTool();
    ~MergeTool();

public:
    int Help();
    int Run(int argc, char* argv[]);

private:
    struct MergeSettings;
    MergeSettings* m_settings;

    struct MergeToolPrivate;
    MergeToolPrivate* m_impl;
};

}  // namespace BamTools

#endif  // BAMTOOLS_MERGE_H
