/**
    bambam
    Copyright (C) 2009-2013 German Tischler
    Copyright (C) 2011-2013 Genome Research Limited

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
**/
#include <biobambam2/zzToName.hpp>

bool zzToRank(libmaus2::bambam::BamAlignment & algn, libmaus2::bambam::BamAuxFilterVector const & zzbafv)
{
	uint64_t const rank = algn.getRank("zz");
	algn.filterOutAux(zzbafv);

	std::string const newname =
		libmaus2::util::NumberSerialisation::formatNumber(rank,0) + "_" + algn.getName();

	algn.replaceName(newname.begin(),newname.size());

	return true;
}
