TTTTTTTTTTTTTTTT	TTTTTTTTTT	0	1 #transcript 0, gene 0, unique match
TTTTTTTTTTTTTTTT	TTTTTTTTAA	0	1 #transcript 0, gene 0, unique match
TTTTTTTTTTTTTTTT	TTTTTTTTGG	0	1 #transcript 0, gene 0, unique match
TTTTTTTTTTTTTTTT	TTTTTTTTCC	0	1 #transcript 0, gene 0, unique match
TTTTTTTTTTTTTTTT	TTTTTTGGCC	0	1 #transcript 0, gene 0, unique match
TTTTTTTTTTTTTTTT	TTTTTTAATT	0	2 #transcript 0, gene 0, unique match
TTTTTTTTTTTTTTTT	TTTTTTCCTT	0	2 #transcript 0, gene 0, unique match
AAACCTGAGAAGCCCA	AAAAAAAATT	1	1 #transcript 1, gene 1, unique match
AAACCTGAGAAGCCCA	AAAAAAAAAA	2	1 #transcript 2, gene 1, unique match together with the line below
AAACCTGAGAAGCCCA	AAAAAAAAAA	3	1 #...
AAACCTGAGAAGCCCA	CCTTCCCCCC	4	1 #transcript 3, gene 1, unique match together with the line below
AAACCTGAGAAGCCCA	CCTTCCCCCC	5	1 #...
AAACCTGAGAAGCCCA	ATGGAAATTT	2	2 #transcript 4, gene 1, unique match together with the two lines below
AAACCTGAGAAGCCCA	ATGGAAATTT	15	2 #...
AAACCTGAGAAGCCCA	ATGGAAATTT	16	2 #...
AAACCTGAGAAGCCCA	CCTTCCCAAA	2	2 #transcript 5, gene 1, unique match together with the two lines below
AAACCTGAGAAGCCCA	CCTTCCCAAA	15	1 #...
AAACCTGAGAAGCCCA	CCTTCCCAAA	17	1 #...
AAACCTGAGAAGCCCA	TTTAAAAATT	1	1 #transcript 1, gene 1, unique match together with the line below
AAACCTGAGAAGCCCA	TTTAAAAATT	2	2 #...
AAACCTGAGAAGCCCA	TTTAAAAAAA	2	1 #transcript 2, gene 1, unique match together with the line below
AAACCTGAGAAGCCCA	TTTAAAAAAA	3	1 #...
AAACCTGAGAAGCCCA	TTTTTTTTAA	4	2 #transcript 3, gene 1, unique match together with the line below
AAACCTGAGAAGCCCA	TTTTTTTTAA	5	2 #...
AAACCTGAGAAGCCCA	CCCCCCCCCC	2	3 #transcript 4, gene 1, unique match together with the two lines below
AAACCTGAGAAGCCCA	CCCCCCCCCC	15	1 #...
AAACCTGAGAAGCCCA	CCCCCCCCCC	16	1 #...
AAACCTGAGAAGCCCA	GGTTCGGGCC	2	1 #transcript 5, gene 1, unique match together with the two lines below
AAACCTGAGAAGCCCA	GGTTCGGGCC	15	2 #...
AAACCTGAGAAGCCCA	GGTTCGGGCC	17	3 #...
AAACCTGAGAAGCCCA	CACCCCCCCC	6	1 #transcript 6, gene 2, unique match
CCACCTGAGAAGCCCA	CCTTCGAACC	7	1 #transcript 7, gene 2, unique match together with the line below
CCACCTGAGAAGCCCA	CCTTCGAACC	8	1 #...
CCACCTGAGAAGCCCA	CCTTCGAAAA	9	1 #transcript 8, gene 2, unique match together with the line below
CCACCTGAGAAGCCCA	CCTTCGAAAA	10	1 #...
CCACCTGAGAAGCCCA	CCTTCGAAGG	18	1 #transcript 9, gene 2, unique match
TTACCTGAGAAGCCCA	CCTTCGAACC	19	1 #transcript 10,11, gene 2,3, together with line below
TTACCTGAGAAGCCCA	CCTTCGAACC	20	1 #...

TTACCTGAGAAGCCCA	CCTTCGTTTT	11	1 #transcript 11, gene 3, unique match
TTTTCTGAGAAGCCCA	CCTTCGTTTT	12	2 #transcript 12, gene 4, unique match
AATTTTTTTTTTTTTT	TTTTTTTTTT	14	1 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTTTTTAA	14	1 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTTTTTCC	14	2 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTTTTTGG	14	3 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTTTAATT	14	4 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTTTCCTT	14	5 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTTTGGTT	14	6 #transcript 13, gene 5, unique match
AATTTTTTTTTTTTTT	TTTTAATTTT	14	7 #transcript 13, gene 5, unique match
