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 [1

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[]\OT1/cmr/m/n/9 The li-brary ap-pears to de-fine (at least) three ob-jects. Th
e one we started on was the cbf[]handle[]struct
 []

[2] [3]
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[][][][]\OT1/cmtt/m/n/9 #define CBF_PARSE_TQ    0x0800  /* PARSE treble quotes 
"""...""" and '''...'''       */  
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[][][][]\OT1/cmtt/m/n/9 #define CBF_PARSE_WIDE      0x4000  /* PARSE wide files
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[][][][]\OT1/cmtt/m/n/9 #define CBF_PARSE_UTF8      0x10000 /* PARSE UTF-8     
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[4] [5]
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[][][]                []\OT1/cmtt/m/n/9 PyErr_SetString(PyExc_ValueError,"Expec
ting a sequence of long integers");  
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 [7]
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[][][]                []\OT1/cmtt/m/n/9 PyErr_SetString(PyExc_ValueError,"Expec
ting a sequence of long integers");  
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 [8]
[9]
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 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2254--2254
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, elsign, (si
ze_t) ndimslow, (size_t) ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2272--2272
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int elsig
n, int ndimfast, int ndimmid, int ndimslow){  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 2281--2281
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_3d_image_fs (self, reser
ved, element_number, compression,  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2282--2282
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, elsign, (si
ze_t) ndimfast, (size_t) ndimmid, (size_t)ndimslow));  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2300--2300
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int elsig
n, int ndimslow, int ndimmid, int ndimfast){  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 2309--2309
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_3d_image_sf (self, reser
ved, element_number, compression,  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 2310--2310
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, elsign, (si
ze_t) ndimslow, (size_t) ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2324--2324
[][][][]\OT1/cmtt/m/n/9 %apply (char *STRING, int LENGTH) { (char *data, int le
n) } set_real_3d_image_sf;  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2328--2328
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int ndims
low, int ndimmid, int ndimfast){  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 2337--2337
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_real_3d_image (self, res
erved, element_number, compression,  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2338--2338
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, (size_t) nd
imslow, (size_t)ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2352--2352
[][][][]\OT1/cmtt/m/n/9 %apply (char *STRING, int LENGTH) { (char *data, int le
n) } set_real_3d_image_fs;  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2356--2356
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int ndimf
ast, int ndimmid, int ndimslow){  
 []


Overfull \hbox (59.17587pt too wide) in paragraph at lines 2365--2365
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_real_3d_image_fs (self, 
reserved, element_number, compression,  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2366--2366
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, (size_t) nd
imfast, (size_t)ndimmid, (size_t)ndimslow));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2380--2380
[][][][]\OT1/cmtt/m/n/9 %apply (char *STRING, int LENGTH) { (char *data, int le
n) } set_real_3d_image_sf;  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2384--2384
[][][]             []\OT1/cmtt/m/n/9 char *data, int len, int elsize, int ndims
low, int ndimmid, int ndimfast){  
 []


Overfull \hbox (59.17587pt too wide) in paragraph at lines 2393--2393
[][][]           []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_real_3d_image_sf (self, 
reserved, element_number, compression,  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2394--2394
[][][]           []\OT1/cmtt/m/n/9 (void *) data,  (size_t) elsize, (size_t) nd
imslow, (size_t)ndimmid, (size_t)ndimfast));  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 2406--2406
[][][]     []\OT1/cmtt/m/n/9 void get_image_size(unsigned int element_number, i
nt *ndimslow, int *ndimfast){  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 2410--2410
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_image_size(self,reserved,el
ement_number,&inslow,&infast));  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 2414--2414
[][][][]\OT1/cmtt/m/n/9 ""","get_image_size",["Integer element_number"],["size_
t ndim1","size_t ndim2"]],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2419--2419
[][][]     []\OT1/cmtt/m/n/9 void get_image_size_fs(unsigned int element_number
, int *ndimfast, int *ndimslow){  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 2423--2423
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_image_size_fs(self,reserved
,element_number,&infast,&inslow));  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 2427--2427
[][][][]\OT1/cmtt/m/n/9 ""","get_image_size_fs",["Integer element_number"],["si
ze_t ndimfast","size_t ndimslow"]],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 2432--2432
[][][]     []\OT1/cmtt/m/n/9 void get_image_size_sf(unsigned int element_number
, int *ndimslow, int *ndimfast){  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 2436--2436
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_image_size(self,reserved,el
ement_number,&inslow,&infast));  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 2440--2440
[][][][]\OT1/cmtt/m/n/9 ""","get_image_size_sf",["Integer element_number"],["si
ze_t ndimslow","size_t ndimfast"]],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2444--2444
[][][][]\OT1/cmtt/m/n/9 %apply int *OUTPUT {int *ndimslow, int *ndimmid, int *n
dimfast} get_3d_image_size;  
 []


Overfull \hbox (96.97543pt too wide) in paragraph at lines 2445--2445
[][][]     []\OT1/cmtt/m/n/9 void get_3d_image_size(unsigned int element_number
, int *ndimslow, int *ndimmid, int *ndimfast){  
 []


Overfull \hbox (73.35071pt too wide) in paragraph at lines 2449--2449
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_3d_image_size(self,reserved
,element_number,&inslow,&inmid,&infast));  
 []


Overfull \hbox (125.3251pt too wide) in paragraph at lines 2454--2454
[][][][]\OT1/cmtt/m/n/9 ""","get_3d_image_size",["Integer element_number"],["si
ze_t ndimslow","size_t ndimmid","size_t ndimfast"]],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2458--2458
[][][][]\OT1/cmtt/m/n/9 %apply int *OUTPUT {int *ndimslow, int *ndimmid, int *n
dimfast} get_3d_image_size;  
 []


Overfull \hbox (111.15027pt too wide) in paragraph at lines 2459--2459
[][][]     []\OT1/cmtt/m/n/9 void get_3d_image_size_fs(unsigned int element_num
ber, int *ndimfast, int *ndimmid, int *ndimslow){  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2463--2463
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_3d_image_size_fs(self,reser
ved,element_number,&infast,&inmid,&inslow));  
 []


Overfull \hbox (125.3251pt too wide) in paragraph at lines 2468--2468
[][][][]\OT1/cmtt/m/n/9 ""","get_3d_image_size",["Integer element_number"],["si
ze_t ndimfast","size_t ndimmid","size_t ndimslow"]],  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 2472--2472
[][][][]\OT1/cmtt/m/n/9 %apply int *OUTPUT {int *ndimslow, int *ndimmid, int *n
dimfast} get_3d_image_size_sf;  
 []


Overfull \hbox (111.15027pt too wide) in paragraph at lines 2473--2473
[][][]     []\OT1/cmtt/m/n/9 void get_3d_image_size_sf(unsigned int element_num
ber, int *ndimslow, int *ndimmid, int *ndimfast){  
 []


Overfull \hbox (87.52554pt too wide) in paragraph at lines 2477--2477
[][][]        []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_3d_image_size_sf(self,reser
ved,element_number,&inslow,&inmid,&infast));  
 []


Overfull \hbox (139.49994pt too wide) in paragraph at lines 2482--2482
[][][][]\OT1/cmtt/m/n/9 ""","get_3d_image_size_sf",["Integer element_number"],[
"size_t ndimslow","size_t ndimmid","size_t ndimfast"]],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 2830--2830
[][][][]\OT1/cmtt/m/n/9 ""","get_axis_ancestor",["String axis_id", "Integer anc
estor_index"],["String"],],  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 2862--2862
[][][][]\OT1/cmtt/m/n/9 %apply double *OUTPUT {double *offset1, double *offset2
, double offset3} get_axis_offset;  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 2903--2903
[][][][]\OT1/cmtt/m/n/9 %apply double *OUTPUT {double *vector1, double *vector2
, double vector3} get_axis_vector;  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 3050--3050
[][][]    []\OT1/cmtt/m/n/9 [],["Float a", "Float b", "Float c", "Float alpha",
 "Float beta", "Float gamma" ] ],  
 []


Overfull \hbox (144.22488pt too wide) in paragraph at lines 3085--3085
[][][]    []\OT1/cmtt/m/n/9 [],["Float astar", "Float bstar", "Float cstar", "F
loat alphastar", "Float betastar", "Float gammastar"] ],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3089--3089
[][][]  []\OT1/cmtt/m/n/9 double *alpha_esd, double *beta_esd, double *gamma_es
d} get_reciprocal_cell_esd;  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 3203--3203
[][][][]\OT1/cmtt/m/n/9 ""","cbf_require_category_root",["String Categoryname"]
,["String categoryroot"]],  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3220--3220
[][][]   []\OT1/cmtt/m/n/9 void set_bin_sizes( int element_number, double slowb
insize_in, double fastbinsize_in) {  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3221--3221
[][][]     []\OT1/cmtt/m/n/9 cbf_failnez(cbf_set_bin_sizes(self,element_number,
slowbinsize_in,fastbinsize_in));  
 []


Overfull \hbox (82.8006pt too wide) in paragraph at lines 3223--3223
[][][][]\OT1/cmtt/m/n/9 ""","set_bin_sizes",["Integer element_number","Float sl
owbinsize_in","Float fastbinsize_in"],[] ],  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 3228--3228
[][][]  []\OT1/cmtt/m/n/9 void get_bin_sizes(int element_number, double *slowbi
nsize, double *fastbinsize) {  
 []


Overfull \hbox (82.8006pt too wide) in paragraph at lines 3229--3229
[][][]    []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_bin_sizes (self, (unsigned int)
element_number, slowbinsize, fastbinsize));  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 3231--3231
[][][][]\OT1/cmtt/m/n/9 ""","get_bin_sizes",["Integer element_number"],["Float 
slowbinsize","Float fastbinsize"] ],  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 3283--3283
[][][]    []\OT1/cmtt/m/n/9 cbf_failnez(cbf_construct_reference_detector(self,&
detector,element_number));  
 []


Overfull \hbox (40.2761pt too wide) in paragraph at lines 3286--3286
[][][][]\OT1/cmtt/m/n/9 ""","construct_reference_detector",["Integer element_nu
mber"],["pycbf detector object"]],  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3294--3294
[][][][]\OT1/cmtt/m/n/9 ""","require_reference_detector",["Integer element_numb
er"],["pycbf detector object"]],  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 3319--3319
[][][][]\OT1/cmtt/m/n/9 ""","construct_reference_positioner",["String axis_id"]
,["pycbf positioner object"]],  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3325--3325
[][][]  []\OT1/cmtt/m/n/9 void get_axis_reference_poise(double *vector1, double
 *vector2, double *vector3,  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 3500--3500
[][][]          []\OT1/cmtt/m/n/9 if args[1].find("cbf")==-1: # but do not try 
the goniometer constructor  
 []


Overfull \hbox (243.44873pt too wide) in paragraph at lines 3596--3596
[][][]  []\OT1/cmtt/m/n/9 %apply double *OUTPUT {double * vector1, double * vec
tor2, double * vector3, double * offset1, double * offset2, double * offset3,  

 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3698--3698
[][][]                                    []\OT1/cmtt/m/n/9 indexfast,indexslow
,normal1,normal2,normal3));  
 []


Overfull \hbox (7.20148pt too wide) in paragraph at lines 3710--3710
[][][]                                    []\OT1/cmtt/m/n/9 indexslow,indexfast
,normal1,normal2,normal3));  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3719--3719
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axis_slow ( double *slowaxis1, dou
ble *slowaxis2, double *slowaxis3){  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 3729--3729
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axis_fast ( double *fastaxis1, dou
ble *fastaxis2, double *fastaxis3){  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 3740--3740
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axes ( double *slowaxis1, double *
slowaxis2, double *slowaxis3,  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 3741--3741
[][][]                            []\OT1/cmtt/m/n/9 double *fastaxis1, double *
fastaxis2, double *fastaxis3){  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3754--3754
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axes_fs ( double *fastaxis1, doubl
e *fastaxis2, double *fastaxis3,  
 []


Overfull \hbox (35.55115pt too wide) in paragraph at lines 3755--3755
[][][]                               []\OT1/cmtt/m/n/9 double *slowaxis1, doubl
e *slowaxis2, double *slowaxis3){  
 []


Overfull \hbox (30.8262pt too wide) in paragraph at lines 3768--3768
[][][]   []\OT1/cmtt/m/n/9 void get_detector_axes_sf ( double *slowaxis1, doubl
e *slowaxis2, double *slowaxis3,  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 3769--3769
[][][]                            []\OT1/cmtt/m/n/9 double *fastaxis1, double *
fastaxis2, double *fastaxis3){  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 3812--3812
[][][]                                       []\OT1/cmtt/m/n/9 indexfast, index
slow, area,projected_area));  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 3823--3823
[][][]                                       []\OT1/cmtt/m/n/9 indexslow, index
fast, area,projected_area));  
 []


Overfull \hbox (163.12466pt too wide) in paragraph at lines 3870--3870
[][][]      []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_pixel_coordinates_fs(self, in
dexfast, indexslow, coordinate1, coordinate2, coordinate3));  
 []


Overfull \hbox (163.12466pt too wide) in paragraph at lines 3883--3883
[][][]      []\OT1/cmtt/m/n/9 cbf_failnez(cbf_get_pixel_coordinates_sf(self, in
dexslow, indexfast, coordinate1, coordinate2, coordinate3));  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 3910--3910
[][][][]\OT1/cmtt/m/n/9 ["double indexfast", "double indexslow", "double center
fast","double centerslow"]],  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 3922--3922
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"]],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3932--3932
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[]],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3942--3942
[][][][]\OT1/cmtt/m/n/9 ["double indexfast", "double indexslow", "double center
fast","double centerslow"],[]],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3952--3952
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[]],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3962--3962
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[]],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3972--3972
[][][][]\OT1/cmtt/m/n/9 ["double indexfast", "double indexslow", "double center
fast","double centerslow"],[]],  
 []


Overfull \hbox (26.10126pt too wide) in paragraph at lines 3982--3982
[][][][]\OT1/cmtt/m/n/9 ["double indexslow", "double indexfast", "double center
slow","double centerfast"],[]],  
 []


Overfull \hbox (49.72598pt too wide) in paragraph at lines 4183--4183
[][][]  []\OT1/cmtt/m/n/9 void compute_reciprocal_cell(double cell[6], double *
astar, double *bstar, double *cstar,  
 []


Overfull \hbox (111.15027pt too wide) in paragraph at lines 4197--4197
[][][][]\OT1/cmtt/m/n/9 ["Float astar", "Float bstar", "Float cstar", "Float al
phastar", "Float betastar", "Float gammastar"] ],  
 []


Overfull \hbox (106.42532pt too wide) in paragraph at lines 4208--4208
[][][][]\OT1/cmtt/m/n/9 ""","airy_disk",["double x", "double y", "double cenx",
 "double ceny", "double volume", "double fwhm"],  
 []


Overfull \hbox (21.37631pt too wide) in paragraph at lines 4216--4216
[][][][]\OT1/cmtt/m/n/9 cbf_failnez(cbf_airy_disk_volume(xlo,ylo,xhi,yhi,cenx,c
eny,volumein,fwhm,volumeout));  
 []


Overfull \hbox (300.14807pt too wide) in paragraph at lines 4220--4220
[][][][]\OT1/cmtt/m/n/9 ""","airy_disk_volume",["double xlo", "double ylo", "do
uble xhi", "double yhi", "double cenx", "double ceny", "double volumein", "doub
le fwhm"],  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 4309--4309
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_get_unit_cell_e
sd",prototype,args,docstring)  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 4311--4311
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_get_reciprocal_
cell_esd",prototype,args,docstring)  
 []


Overfull \hbox (16.65137pt too wide) in paragraph at lines 4313--4313
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_set_unit_cell_e
sd",prototype,args,docstring)  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 4315--4315
[][][]           []\OT1/cmtt/m/n/9 cbf_handle_wrapper.wrap("cbf_set_reciprocal_
cell_esd",prototype,args,docstring)  
 []

! Dimension too large.
\height ->\ht \@tempboxa 
                         
l.4346 \end{minipage}
                     \vspace{4ex}
? 

Overfull \hbox (304.87302pt too wide) in paragraph at lines 4375--4375
[][][]         []\OT1/cmtt/m/n/9 'm4_ifelse(regexlibdir,`NOREGEXLIBDIR',`librar
y_dirs=["../solib/","../lib/"],',`library_dirs=["../solib/","../lib/","'regexli
bdir`"],')`  
 []


Overfull \hbox (399.37192pt too wide) in paragraph at lines 4376--4376
[][][]         []\OT1/cmtt/m/n/9 'm4_ifelse(regexlib,`',`libraries=["cbf"],', `
m4_ifelse(regexlib2,`',`libraries=["cbf","'regexlib`"],',`libraries=["cbf","'re
gexlib`","'regexlib2`"],')'  )`  
 []


Underfull \vbox (badness 1248) has occurred while \output is active []

 [10]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [11]
[12] (./TODO.txt)
Underfull \vbox (badness 10000) has occurred while \output is active []

 [13]
Overfull \vbox (57.62393pt too high) has occurred while \output is active []


[14]
! Missing $ inserted.
<inserted text> 
                $
l.4719 ...n of pycbf_test1 with write logic added}
                                                  
? 
! Missing $ inserted.
<inserted text> 
                $
l.4719 ...n of pycbf_test1 with write logic added}
                                                  
? 

Package hyperref Warning: Token not allowed in a PDFDocEncoded string,
(hyperref)                removing `subscript' on input line 4719.


Underfull \vbox (badness 10000) has occurred while \output is active []

 [15]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [16]
Overfull \vbox (472.76971pt too high) has occurred while \output is active []


! Missing $ inserted.
<inserted text> 
                $
l.4837 \end{flushleft}
                      
? 
LaTeX Font Info:    External font `cmex10' loaded for size
(Font)              <7> on input line 4837.
! Missing $ inserted.
<inserted text> 
                $
l.4837 \end{flushleft}
                      
? 
[17]
Overfull \hbox (63.90082pt too wide) in paragraph at lines 4864--4864
[][][]    []\OT1/cmtt/m/n/9 print '(0, 0) v00 [ %.9f %.9f %.9f ]' %(round(v00[0
],9), round(v00[1],9), round(v00[2],9))  
 []


Overfull \hbox (63.90082pt too wide) in paragraph at lines 4865--4865
[][][]    []\OT1/cmtt/m/n/9 print '(0, 1) v01 [ %.9g %.9g %.9g ]' %(round(v01[0
],9), round(v01[1],9), round(v01[2],9))  
 []


Overfull \hbox (63.90082pt too wide) in paragraph at lines 4866--4866
[][][]    []\OT1/cmtt/m/n/9 print '(1, 0) v10 [ %.9g %.9g %.9g ]' %(round(v10[0
],9), round(v10[1],9), round(v10[2],9))  
 []


Overfull \hbox (63.90082pt too wide) in paragraph at lines 4867--4867
[][][]    []\OT1/cmtt/m/n/9 print '(1, 1) v11 [ %.9g %.9g %.9g ]' %(round(v11[0
],9), round(v11[1],9), round(v11[2],9))  
 []


Overfull \hbox (45.00104pt too wide) in paragraph at lines 4869--4869
[][][]    []\OT1/cmtt/m/n/9 print "surface axes:",  d.get_detector_surface_axes
(0), d.get_detector_surface_axes(1)  
 []


Overfull \hbox (177.2995pt too wide) in paragraph at lines 4871--4871
[][][]    []\OT1/cmtt/m/n/9 print d.get_detector_surface_axes(0), "has", cbf.co
unt_axis_ancestors(d.get_detector_surface_axes(0)), "ancestors"  
 []


Overfull \hbox (177.2995pt too wide) in paragraph at lines 4872--4872
[][][]    []\OT1/cmtt/m/n/9 print d.get_detector_surface_axes(1), "has", cbf.co
unt_axis_ancestors(d.get_detector_surface_axes(1)), "ancestors"  
 []


Overfull \hbox (11.92642pt too wide) in paragraph at lines 4881--4881
[][][]        []\OT1/cmtt/m/n/9 print "    equipment_component", cbf.get_axis_e
quipment_component(cur_axis)  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 4883--4883
[][][]        []\OT1/cmtt/m/n/9 print "    vector [ %.8g %.8g %.8g ]" % (round(
vector[0],7), round(vector[1],7), round(vector[2],7))  
 []


Overfull \hbox (130.05005pt too wide) in paragraph at lines 4885--4885
[][][]        []\OT1/cmtt/m/n/9 print "    offset [ %.8g %.8g %.8g ]" % (round(
offset[0],7), round(offset[1],7), round(offset[2],7))  
 []


Underfull \vbox (badness 6675) has occurred while \output is active []

 [18]
Overfull \hbox (2.47653pt too wide) in paragraph at lines 5030--5030
[][][]         []\OT1/cmtt/m/n/9 UINT32        header_major_version;     /* hea
der_major_version  (n.) */  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5031--5031
[][][]         []\OT1/cmtt/m/n/9 UINT32        header_minor_version;     /* hea
der_minor_version  (.n) */  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5068--5068
[][][]         []\OT1/cmtt/m/n/9 UINT32        background_applied; /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5070--5070
[][][]         []\OT1/cmtt/m/n/9 UINT32        bias_applied;       /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5072--5072
[][][]         []\OT1/cmtt/m/n/9 UINT32        flatfield_applied;  /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5074--5074
[][][]         []\OT1/cmtt/m/n/9 UINT32        distortion_applied; /* flags cor
rection has been applied -  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5093--5093
[][][]         []\OT1/cmtt/m/n/9 UINT32        pixel_noise[MAXIMAGES]; /* 1000*
base noise value (ADUs) */  
 []


Overfull \hbox (2.47653pt too wide) in paragraph at lines 5137--5137
[][][]         []\OT1/cmtt/m/n/9 INT32 measured_bias[MAXIMAGES]; /* 1000*mean b
ias value for each image*/  
 []


Underfull \vbox (badness 10000) has occurred while \output is active []

 [19]
Overfull \vbox (3050.37395pt too high) has occurred while \output is active []


[20]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [21]
Overfull \vbox (2159.37395pt too high) has occurred while \output is active []


[22]
Underfull \vbox (badness 10000) has occurred while \output is active []

 [23]
Overfull \vbox (1752.37395pt too high) has occurred while \output is active []


[24] (./pycbf.aux) ) 
Here is how much of TeX's memory you used:
 2545 strings out of 478995
 37127 string characters out of 5858210
 1496958 words of memory out of 5000000
 20043 multiletter control sequences out of 15000+600000
 410047 words of font info for 49 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 53i,11n,60p,220b,378s stack positions out of 5000i,500n,10000p,200000b,80000s

Output written on pycbf.dvi (24 pages, 219384 bytes).
