#INPUT_BAM=/Users/nemesh/dropseqrna/transcriptome_java/public/testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2_retagged.bam	INPUT_VCF=/Users/nemesh/dropseqrna/transcriptome_java/public/testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2.vcf	DONOR_FILE=testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/donors.txt	CELL_BC_FILE=testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2_retagged.cellBarcodes.txt	GQ_THRESHOLD=30	FRACTION_SAMPLES_PASSING=0.5	FORCED_RATIO=0.8	USE_MISSING_DATA=false	READ_MQ=10	FIXED_ERROR_RATE=0.1	MAX_ERROR_RATE=NA	LOCUS_FUNCTION=[CODING, UTR]	PAIRS_TO_TEST=5
cell	sampleOneMixtureRatio	sampleOne	sampleOneLikelihood	sampleTwo	sampleTwoLikelihood	mixedSample	mixedSampleLikelihood	num_paired_snps	num_inform_snps	num_umi	num_inform_umis	lr_test_stat	sampleOneWrongAlleleCount	num_homozygous_inform_umis_s1	sampleTwoWrongAlleleCount	num_homozygous_inform_umis_s2	bestLikelihood	bestSample	doublet_pval	bestLikelihoodScaled
TTTGCGCGGAGC:ATTGTTTAGGAG	0.512	HUES53	-153.10675595991611	NKX	-156.2368735321297	HUES53:NKX	-125.67600285333339	437	279	616	389	27.430753106582728	75	233	74	217	-125.67600285333339	HUES53:NKX	1.0	-125.67600285333339
TTTGCGCGGAGC:ATTGTTTAGGAG	0.788	HUES53	-148.71421098313078	HUES62	-189.50348392271076	HUES53:HUES62	-144.29229114938252	431	247	609	330	4.421919833748262	71	185	110	171	-144.29229114938252	HUES53:HUES62	0.9999621501878889	-145.95082323155935
TTTGCGCGGAGC:ATTGTTTAGGAG	0.8	HUES53	-152.06099846935544	HUES63	-199.8763240686725	HUES53:HUES63	-149.74173373269946	435	248	614	367	2.319264736655981	74	218	111	169	-149.74173373269946	HUES53:HUES63	0.9952284656721014	-150.22949182303398
TTTGCGCGGAGC:ATTGTTTAGGAG	0.778	HUES53	-153.10675595991611	HUES64	-192.38862894646084	HUES53:HUES64	-147.96902732561392	437	236	616	342	5.137728634302192	75	204	106	166	-147.96902732561392	HUES53:HUES64	0.9999927177060874	-147.96902732561392
