#INPUT_BAM=/Users/nemesh/dropseqrna/transcriptome_java/public/testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG_retagged.bam	INPUT_VCF=/Users/nemesh/dropseqrna/transcriptome_java/public/testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG.vcf	DONOR_FILE=testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/donors.txt	CELL_BC_FILE=testdata/org/broadinstitute/dropseq/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG_retagged.cellBarcodes.txt	GQ_THRESHOLD=30	FRACTION_SAMPLES_PASSING=0.5	FORCED_RATIO=0.8	USE_MISSING_DATA=false	READ_MQ=10	FIXED_ERROR_RATE=0.1	MAX_ERROR_RATE=NA	LOCUS_FUNCTION=[CODING, UTR]	PAIRS_TO_TEST=5
cell	sampleOneMixtureRatio	sampleOne	sampleOneLikelihood	sampleTwo	sampleTwoLikelihood	mixedSample	mixedSampleLikelihood	num_paired_snps	num_inform_snps	num_umi	num_inform_umis	lr_test_stat	sampleOneWrongAlleleCount	num_homozygous_inform_umis_s1	sampleTwoWrongAlleleCount	num_homozygous_inform_umis_s2	bestLikelihood	bestSample	doublet_pval	bestLikelihoodScaled
TTTGCGCGGAGC:ATTGTTTAGGAG	0.643	HUES53	-9.809267316584512	NKX	-12.039872351540367	HUES53:NKX	-8.726217283976453	28	18	32	22	1.0830500326080585	5	16	6	11	-8.726217283976453	HUES53:NKX	0.9232928713840672	-8.726217283976453
TTTGCGCGGAGC:ATTGTTTAGGAG	0.762	HUES53	-9.809267316584512	HUES62	-12.295144856643674	HUES53:HUES62	-9.392277461462395	28	15	32	17	0.4169898551221163	5	13	6	7	-9.392277461462395	HUES53:HUES62	0.7224993308685307	-9.392277461462395
TTTGCGCGGAGC:ATTGTTTAGGAG	0.694	HUES53	-9.809267316584512	HUES63	-11.906177329592568	HUES53:HUES63	-9.297007421729138	28	12	32	15	0.512259894855374	5	8	8	11	-9.297007421729138	HUES53:HUES63	0.7634257625901003	-9.297007421729138
TTTGCGCGGAGC:ATTGTTTAGGAG	0.756	HUES53	-9.809267316584512	HUES64	-11.973024840566469	HUES53:HUES64	-9.46127668725548	28	11	32	14	0.3479906293290309	5	9	7	8	-9.46127668725548	HUES53:HUES64	0.6887844758402738	-9.46127668725548
