Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: hhsuite
Upstream-Contact: Andreas Hauser <hauser@genzentrum.lmu.de>
                  Johannes Soeding <soeding@genzentrum.lmu.de>
Source: ftp://toolkit.lmb.uni-muenchen.de/HH-suite/releases/hhsuite-([0-9.]+)\.tar\.gz
Files-Excluded: scripts/hhpred
                lib/simde

Files: *
Copyright: 2006, 2012 Johannes Soeding
           2012 Michael Remmert
           2012 Andreas Hauser <hauser@genzentrum.lmu.de>
           2006, 2009-2012 Andreas Biegert
           2009-2012 Christof Angermueller
License: GPL-3.0+

Files: src/cs/getopt_pp.h src/cs/getopt_pp.cc
Copyright: 2007, 2008  Daniel Gutson, FuDePAN
License: GPL-3.0+

Files: src/hhprefilter.h
Copyright: 2012-2015, Boston College.
License: Expat

Files: lib/ffindex/*
Copyright: Andreas Hauser <hauser@genzentrum.lmu.de>
           Martin Steinegger <martin.steinegger@mpibpc.mpg.de>
           Markus Meier <markus.meier@mpibpc.mpg.de>
           2009 Open Information Security Foundation
License: CC-BY-SA-4.0

Files: lib/ffindex/src/mpq/*
Copyright: 2015 Milot Mirdita <milot@mirdita.de>
License: Expat

Files: debian/*
Copyright: 2012 Laszlo Kajan <lkajan@rostlab.org>
           2019 Michael R. Crusoe <michael.crusoe@gmail.com>
           2022 Sascha Steinbiss <satta@debian.org>
License: GPL-3.0+

Files: cmake/xxdi.pl
Copyright: 2013, Linux Foundation
 2013, Greg Kroah-Hartman <gregkh@linuxfoundation.org>
License: GPL-2
    This program is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; version 2.
    .
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
    .
    You should have received a copy of the GNU General Public License
    along with this program. If not, see <https://www.gnu.org/licenses/>
    .
    On Debian systems, the complete text of the GNU General
    Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".


Files: cmake/FindASan.cmake cmake/FindMSan.cmake cmake/FindTSan.cmake cmake/FindUBSan.cmake
Copyright: 2013 Matthew Arsenault
License: Expat

License: Expat
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.

License: GPL-3.0+
 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>.
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

License: CC-BY-SA-4.0
 ## Creative Commons Attribution-ShareAlike 4.0 International Public License
 .
 By exercising the Licensed Rights (defined below), You accept and agree to be
 bound by the terms and conditions of this Creative Commons
 Attribution-ShareAlike 4.0 International Public License ("Public License"). To
 the extent this Public License may be interpreted as a contract, You are
 granted the Licensed Rights in consideration of Your acceptance of these terms
 and conditions, and the Licensor grants You such rights in consideration of
 benefits the Licensor receives from making the Licensed Material available
 under these terms and conditions.
 .
 ### Section 1 – Definitions.
 .
 a. __Adapted Material__ means material subject to Copyright and Similar Rights
 that is derived from or based upon the Licensed Material and in which the
 Licensed Material is translated, altered, arranged, transformed, or otherwise
 modified in a manner requiring permission under the Copyright and Similar
 Rights held by the Licensor. For purposes of this Public License, where the
 Licensed Material is a musical work, performance, or sound recording, Adapted
 Material is always produced where the Licensed Material is synched in timed
 relation with a moving image.
 .
 b. __Adapter's License__ means the license You apply to Your Copyright and
 Similar Rights in Your contributions to Adapted Material in accordance with
 the terms and conditions of this Public License.
 .
 c. __BY-SA Compatible License__ means a license listed at
 [creativecommons.org/compatiblelicenses](http://creativecommons.org/compatiblelicenses),
 approved by Creative Commons as essentially the equivalent of this Public
 License.
 .
 d. __Copyright and Similar Rights__ means copyright and/or similar rights
 closely related to copyright including, without limitation, performance,
 broadcast, sound recording, and Sui Generis Database Rights, without regard to
 how the rights are labeled or categorized. For purposes of this Public
 License, the rights specified in Section 2(b)(1)-(2) are not Copyright and
 Similar Rights.
 .
 e. __Effective Technological Measures__ means those measures that, in the
 absence of proper authority, may not be circumvented under laws fulfilling
 obligations under Article 11 of the WIPO Copyright Treaty adopted on December
 20, 1996, and/or similar international agreements.
 .
 f. __Exceptions and Limitations__ means fair use, fair dealing, and/or any
 other exception or limitation to Copyright and Similar Rights that applies to
 Your use of the Licensed Material.
 .
 g. __License Elements__ means the license attributes listed in the name of a
 Creative Commons Public License. The License Elements of this Public License
 are Attribution and ShareAlike.
 .
 h. __Licensed Material__ means the artistic or literary work, database, or
 other material to which the Licensor applied this Public License.
 .
 i. __Licensed Rights__ means the rights granted to You subject to the terms
 and conditions of this Public License, which are limited to all Copyright and
 Similar Rights that apply to Your use of the Licensed Material and that the
 Licensor has authority to license.
 .
 j. __Licensor__ means the individual(s) or entity(ies) granting rights under
 this Public License.
 .
 k. __Share__ means to provide material to the public by any means or process
 that requires permission under the Licensed Rights, such as reproduction,
 public display, public performance, distribution, dissemination,
 communication, or importation, and to make material available to the public
 including in ways that members of the public may access the material from a
 place and at a time individually chosen by them.
 .
 l. __Sui Generis Database Rights__ means rights other than copyright resulting
 from Directive 96/9/EC of the European Parliament and of the Council of 11
 March 1996 on the legal protection of databases, as amended and/or succeeded,
 as well as other essentially equivalent rights anywhere in the world.
 .
 m. __You__ means the individual or entity exercising the Licensed Rights under
 this Public License. Your has a corresponding meaning.
 .
 ### Section 2 – Scope.
 .
 a. ___License grant.___
 .
    1. Subject to the terms and conditions of this Public License, the Licensor
 hereby grants You a worldwide, royalty-free, non-sublicensable, non-exclusive,
 irrevocable license to exercise the Licensed Rights in the Licensed Material
 to:
 .
        A. reproduce and Share the Licensed Material, in whole or in part; and
 .
        B. produce, reproduce, and Share Adapted Material.
 .
    2. __Exceptions and Limitations.__ For the avoidance of doubt, where
 Exceptions and Limitations apply to Your use, this Public License does not
 apply, and You do not need to comply with its terms and conditions.
 .
    3. __Term.__ The term of this Public License is specified in Section 6(a).
 .
    4. __Media and formats; technical modifications allowed.__ The Licensor
 authorizes You to exercise the Licensed Rights in all media and formats
 whether now known or hereafter created, and to make technical modifications
 necessary to do so. The Licensor waives and/or agrees not to assert any right
 or authority to forbid You from making technical modifications necessary to
 exercise the Licensed Rights, including technical modifications necessary to
 circumvent Effective Technological Measures. For purposes of this Public
 License, simply making modifications authorized by this Section 2(a)(4) never
 produces Adapted Material.
 .
    5. __Downstream recipients.__
 .
        A. __Offer from the Licensor – Licensed Material.__ Every recipient of
 the Licensed Material automatically receives an offer from the Licensor to
 exercise the Licensed Rights under the terms and conditions of this Public
 License.
 .
        B. __Additional offer from the Licensor – Adapted Material.__ Every
 recipient of Adapted Material from You automatically receives an offer from
 the Licensor to exercise the Licensed Rights in the Adapted Material under the
 conditions of the Adapter’s License You apply.
 .
        C. __No downstream restrictions.__ You may not offer or impose any
 additional or different terms or conditions on, or apply any Effective
 Technological Measures to, the Licensed Material if doing so restricts
 exercise of the Licensed Rights by any recipient of the Licensed Material.
 .
    6. __No endorsement.__ Nothing in this Public License constitutes or may be
 construed as permission to assert or imply that You are, or that Your use of
 the Licensed Material is, connected with, or sponsored, endorsed, or granted
 official status by, the Licensor or others designated to receive attribution
 as provided in Section 3(a)(1)(A)(i).
 .
 b. ___Other rights.___
 .
    1. Moral rights, such as the right of integrity, are not licensed under
 this Public License, nor are publicity, privacy, and/or other similar
 personality rights; however, to the extent possible, the Licensor waives
 and/or agrees not to assert any such rights held by the Licensor to the
 limited extent necessary to allow You to exercise the Licensed Rights, but not
 otherwise.
 .
    2. Patent and trademark rights are not licensed under this Public License.
 .
    3. To the extent possible, the Licensor waives any right to collect
 royalties from You for the exercise of the Licensed Rights, whether directly
 or through a collecting society under any voluntary or waivable statutory or
 compulsory licensing scheme. In all other cases the Licensor expressly
 reserves any right to collect such royalties.
 .
 ### Section 3 – License Conditions.
 .
 Your exercise of the Licensed Rights is expressly made subject to the
 following conditions.
 .
 a. ___Attribution.___
 .
    1. If You Share the Licensed Material (including in modified form), You
 must:
 .
        A. retain the following if it is supplied by the Licensor with the
 Licensed Material:
 .
    i. identification of the creator(s) of the Licensed Material and any
 others designated to receive attribution, in any reasonable manner requested
 by the Licensor (including by pseudonym if designated);
 .
    ii. a copyright notice;
 .
    iii. a notice that refers to this Public License;
 .
    iv. a notice that refers to the disclaimer of warranties;
 .
    v. a URI or hyperlink to the Licensed Material to the extent
 reasonably practicable;
 .
        B. indicate if You modified the Licensed Material and retain an
 indication of any previous modifications; and
 .
        C. indicate the Licensed Material is licensed under this Public
 License, and include the text of, or the URI or hyperlink to, this Public
 License.
 .
    2. You may satisfy the conditions in Section 3(a)(1) in any reasonable
 manner based on the medium, means, and context in which You Share the Licensed
 Material. For example, it may be reasonable to satisfy the conditions by
 providing a URI or hyperlink to a resource that includes the required
 information.
 .
    3. If requested by the Licensor, You must remove any of the information
 required by Section 3(a)(1)(A) to the extent reasonably practicable.
 .
 b. ___ShareAlike.___
 .
 In addition to the conditions in Section 3(a), if You Share Adapted Material
 You produce, the following conditions also apply.
 .
 1. The Adapter’s License You apply must be a Creative Commons license with the
 same License Elements, this version or later, or a BY-SA Compatible License.
 .
 2. You must include the text of, or the URI or hyperlink to, the Adapter's
 License You apply. You may satisfy this condition in any reasonable manner
 based on the medium, means, and context in which You Share Adapted Material.
 .
 3. You may not offer or impose any additional or different terms or conditions
 on, or apply any Effective Technological Measures to, Adapted Material that
 restrict exercise of the rights granted under the Adapter's License You apply.
 .
 ### Section 4 – Sui Generis Database Rights.
 .
 Where the Licensed Rights include Sui Generis Database Rights that apply to
 Your use of the Licensed Material:
 .
 a. for the avoidance of doubt, Section 2(a)(1) grants You the right to
 extract, reuse, reproduce, and Share all or a substantial portion of the
 contents of the database;
 .
 b. if You include all or a substantial portion of the database contents in a
 database in which You have Sui Generis Database Rights, then the database in
 which You have Sui Generis Database Rights (but not its individual contents)
 is Adapted Material, including for purposes of Section 3(b); and
 .
 c. You must comply with the conditions in Section 3(a) if You Share all or a
 substantial portion of the contents of the database.
 .
 For the avoidance of doubt, this Section 4 supplements and does not replace
 Your obligations under this Public License where the Licensed Rights include
 other Copyright and Similar Rights.
 .
 ### Section 5 – Disclaimer of Warranties and Limitation of Liability.
 .
 a. __Unless otherwise separately undertaken by the Licensor, to the extent
 possible, the Licensor offers the Licensed Material as-is and as-available,
 and makes no representations or warranties of any kind concerning the Licensed
 Material, whether express, implied, statutory, or other. This includes,
 without limitation, warranties of title, merchantability, fitness for a
 particular purpose, non-infringement, absence of latent or other defects,
 accuracy, or the presence or absence of errors, whether or not known or
 discoverable. Where disclaimers of warranties are not allowed in full or in
 part, this disclaimer may not apply to You.__
 .
 b. __To the extent possible, in no event will the Licensor be liable to You on
 any legal theory (including, without limitation, negligence) or otherwise for
 any direct, special, indirect, incidental, consequential, punitive, exemplary,
 or other losses, costs, expenses, or damages arising out of this Public
 License or use of the Licensed Material, even if the Licensor has been advised
 of the possibility of such losses, costs, expenses, or damages. Where a
 limitation of liability is not allowed in full or in part, this limitation may
 not apply to You.__
 .
 c. The disclaimer of warranties and limitation of liability provided above
 shall be interpreted in a manner that, to the extent possible, most closely
 approximates an absolute disclaimer and waiver of all liability.
 .
 ### Section 6 – Term and Termination.
 .
 a. This Public License applies for the term of the Copyright and Similar
 Rights licensed here. However, if You fail to comply with this Public License,
 then Your rights under this Public License terminate automatically.
 .
 b. Where Your right to use the Licensed Material has terminated under Section
 6(a), it reinstates:
 .
    1. automatically as of the date the violation is cured, provided it is
 cured within 30 days of Your discovery of the violation; or
 .
    2. upon express reinstatement by the Licensor.
 .
    For the avoidance of doubt, this Section 6(b) does not affect any right the
 Licensor may have to seek remedies for Your violations of this Public License.
 .
 c. For the avoidance of doubt, the Licensor may also offer the Licensed
 Material under separate terms or conditions or stop distributing the Licensed
 Material at any time; however, doing so will not terminate this Public
 License.
 .
 d. Sections 1, 5, 6, 7, and 8 survive termination of this Public License.
 .
 ### Section 7 – Other Terms and Conditions.
 .
 a. The Licensor shall not be bound by any additional or different terms or
 conditions communicated by You unless expressly agreed.
 .
 b. Any arrangements, understandings, or agreements regarding the Licensed
 Material not stated herein are separate from and independent of the terms and
 conditions of this Public License.
 .
 ### Section 8 – Interpretation.
 .
 a. For the avoidance of doubt, this Public License does not, and shall not be
 interpreted to, reduce, limit, restrict, or impose conditions on any use of
 the Licensed Material that could lawfully be made without permission under
 this Public License.
 .
 b. To the extent possible, if any provision of this Public License is deemed
 unenforceable, it shall be automatically reformed to the minimum extent
 necessary to make it enforceable. If the provision cannot be reformed, it
 shall be severed from this Public License without affecting the enforceability
 of the remaining terms and conditions.
 .
 c. No term or condition of this Public License will be waived and no failure
 to comply consented to unless expressly agreed to by the Licensor.
 .
 d. Nothing in this Public License constitutes or may be interpreted as a
 limitation upon, or waiver of, any privileges and immunities that apply to the
 Licensor or You, including from the legal processes of any jurisdiction or
 authority.
 .
 > Creative Commons is not a party to its public licenses. Notwithstanding,
 > Creative Commons may elect to apply one of its public licenses to material
 > it publishes and in those instances will be considered the “Licensor.” The
 > text of the Creative Commons public licenses is dedicated to the public
 > domain under the [CC0 Public Domain
 > Dedication](https://creativecommons.org/publicdomain/zero/1.0/legalcode).
 > Except for the limited purpose of indicating that material is shared under a
 > Creative Commons public license or as otherwise permitted by the Creative
 > Commons policies published at
 > [creativecommons.org/policies](http://creativecommons.org/policies),
 > Creative Commons does not authorize the use of the trademark “Creative
 > Commons” or any other trademark or logo of Creative Commons without its
 > prior written consent including, without limitation, in connection with any
 > unauthorized modifications to any of its public licenses or any other
 > arrangements, understandings, or agreements concerning use of licensed
 > material. For the avoidance of doubt, this paragraph does not form part of
 > the public licenses.
 >
 > Creative Commons may be contacted at creativecommons.org.
