/*
 * The MIT License (MIT)
 *
 * Copyright (c) 2007-2015 Broad Institute
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 * THE SOFTWARE.
 */

/*
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 * and open the template in the editor.
 */

package org.broad.igv.data;

import org.broad.igv.feature.LocusScore;
import org.broad.igv.renderer.DataRange;
import org.broad.igv.track.TrackType;
import org.broad.igv.track.WindowFunction;

import java.util.Collection;
import java.util.Collections;
import java.util.List;

/**
 * @author jrobinso
 */
public interface DataSource {

    double getDataMax();

    double getDataMin();

    List<LocusScore> getSummaryScoresForRange(
            String chr,
            int startLocation,
            int endLocation,
            int zoom);

    TrackType getTrackType();

    void setWindowFunction(WindowFunction statType);

    boolean isLogNormalized();

    public WindowFunction getWindowFunction();

    public default Collection<WindowFunction> getAvailableWindowFunctions() {
        return Collections.EMPTY_LIST;
    }

    default boolean isIndexable() {
        return true;
    }

    /**
     * Release any resources (file handles, etc)
     */
    void dispose();
}
