# Test a variety of commands, not comprehensive (yet)
snapshotDirectory $SCRIPT_DIR/snapshots/commands
version
new
genome hg19
load gs://genomics-public-data/platinum-genomes/bam/NA12877_S1.bam
load gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam
snapshot loadBams.png
goto myc
snapshot myc.pngcollapse NA12878_S1.bam
snapshot collapsed_NA12898.png
squish NA12878_S1.bam
snapshot squish_NA12878.png
expand NA12878_S1.bam
snapshot expand.png
viewAsPairs true NA12878_S1.bam
snapshot viewAsPairs.png
viewAsPairs false NA12878_S1.bam
snapshot viewAsPairsOff.png
squish
group STRAND
snapshot groupByStrang.png
group NONE
snapshot ungroup.png
expand
goto chr17:7,579,801
sort BASE chr17:7,579,801
snapshot sortByBase.png
setSequenceStrand -
snapshot minusStrang.png
setSequenceShowTranslation true
snapshot showTranslation.png
setTrackHeight 30 NA12878_S1.bam
setLogScale true NA12878_S1.bam%20Coverage
setDataRange 0,1000 NA12878_S1.bam%20Coverage
setColor 0,0,100 NA12878_S1.bam%20Coverage
snapshot blueCoverage.png
