LOCUS       CH1L1CG                 7502 bp    DNA     circular BCT 06-APR-2020
DEFINITION  Chlamydia trachomatis plasmid pCHL1, complete sequence.
ACCESSION   J03321
VERSION     J03321.1
DBLINK      BioSample: SAMN14225621
KEYWORDS    .
SOURCE      Chlamydia trachomatis
  ORGANISM  Chlamydia trachomatis
            Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
            Chlamydia/Chlamydophila group; Chlamydia.
REFERENCE   1  (bases 1 to 7502)
  AUTHORS   Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
  TITLE     Diversity of the Chlamydia trachomatis common plasmid in biovars
            with different pathogenicity
  JOURNAL   Plasmid 23 (2), 149-154 (1990)
   PUBMED   2194229
REFERENCE   2  (bases 1 to 7502)
  AUTHORS   Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUN-2010) Sclavo Research Centre, Siena, Italy
COMMENT     Draft entry and computer-readable sequence kindly submitted by
            G.Ratti, 28-MAR-1990.
            ! CDS location split below (and this line added), for Jalview test purposes !
FEATURES             Location/Qualifiers
     source          1..7502
                     /organism="Chlamydia trachomatis"
                     /mol_type="genomic DNA"
                     /serotype="D"
                     /isolate="G0/86"
                     /isolation_source="trachoma"
                     /db_xref="taxon:813"
                     /plasmid="pCHL1"
     CDS             join(7022..7502,
                     1..437)
                     /note="pGP7-D"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91567.1"
                     /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSL
                     EILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLT
                     KGYIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQ
                     GIRKLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNG
                     RVFVSKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMR
                     ISCLSSRQSVCSYCSGEEVIPLVQTPTIL"
     CDS             complement(488..1480)
                     /note="pGP8-D"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91568.1"
                     /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEV
                     IMHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKT
                     SWTEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSL
                     QTASFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQT
                     EKRIIITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKI
                     TPHVLRATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI"
     CDS             1579..2934
                     /note="pGP1-D"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91569.1"
                     /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCS
                     HHKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVS
                     HTVFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSI
                     RSARGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKG
                     NFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGE
                     KLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFI
                     DYLQLINSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSD
                     LRDSGQIEQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKV
                     W"
     CDS             2928..3992
                     /note="pGP2-D"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91570.1"
                     /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVI
                     GLDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLE
                     AYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTL
                     SPIIRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPA
                     NVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYIL
                     RMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERF
                     EEITKKSKEQMEQLEQESIN"
     CDS             4054..4848
                     /note="pGP3-D"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91571.1"
                     /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVA
                     AKMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQ
                     DILDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSG
                     SMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTP
                     TTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA"
     CDS             4918..5226
                     /note="pGP4-D"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91572.1"
                     /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLE
                     LYHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE
                     "
     CDS             5317..6048
                     /note="pGP5-D (gtg start codon)"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91573.1"
                     /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVY
                     TSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICI
                     IDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIAL
                     SFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAED
                     ILKLTHEIANILHIEYERDYSQRTT"
     CDS             6045..6788
                     /note="pGP6-D (gtg start codon)"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="AAA91574.1"
                     /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQS
                     LDRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDH
                     FSSTTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKG
                     DLKTKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEI
                     LRIMCSGVSLSSYNENLLQQLFELFKQKS"
     repeat_region   6857..6945
                     /note="four tandem 22bp repeats"
ORIGIN      
        1 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca
       61 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat
      121 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat
      181 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg
      241 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt
      301 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt
      361 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa
      421 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac
      481 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt
      541 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc
      601 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa
      661 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca
      721 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta
      781 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct
      841 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta
      901 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg
      961 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg
     1021 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg
     1081 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg
     1141 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa
     1201 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg
     1261 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt
     1321 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt
     1381 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta
     1441 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac
     1501 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg
     1561 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc
     1621 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg
     1681 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa
     1741 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg
     1801 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca
     1861 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc
     1921 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca
     1981 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata
     2041 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag
     2101 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa
     2161 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc
     2221 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta
     2281 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct
     2341 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct
     2401 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct
     2461 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac
     2521 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc
     2581 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat
     2641 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc
     2701 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga
     2761 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg
     2821 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta
     2881 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata
     2941 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac
     3001 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag
     3061 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg
     3121 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc
     3181 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg
     3241 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa
     3301 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa
     3361 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta
     3421 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac
     3481 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct
     3541 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa
     3601 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag
     3661 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat
     3721 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa
     3781 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg
     3841 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag
     3901 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa
     3961 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt
     4021 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat
     4081 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc
     4141 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct
     4201 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt
     4261 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt
     4321 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa
     4381 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt
     4441 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata
     4501 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt
     4561 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag
     4621 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc
     4681 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa
     4741 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat
     4801 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt
     4861 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg
     4921 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat
     4981 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct
     5041 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa
     5101 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta
     5161 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct
     5221 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt
     5281 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt
     5341 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg
     5401 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat
     5461 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt
     5521 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta
     5581 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc
     5641 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact
     5701 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga
     5761 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg
     5821 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca
     5881 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat
     5941 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat
     6001 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa
     6061 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga
     6121 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg
     6181 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca
     6241 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc
     6301 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa
     6361 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc
     6421 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat
     6481 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg
     6541 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc
     6601 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag
     6661 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag
     6721 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa
     6781 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt
     6841 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga
     6901 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac
     6961 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa
     7021 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga
     7081 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt
     7141 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga
     7201 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc
     7261 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag
     7321 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt
     7381 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt
     7441 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca
     7501 ag
//

