Alignment Window Menus

Alignment Window View Menu

- New View (Control T)
  Creates a new view from the current alignment view.
- Expand Views (X)
  Display each view associated with the alignment in its own alignment window, allowing several views to be displayed simultaneously.
- Gather Views (G)
  Each view associated with the alignment will be displayed within its own tab on the current alignment window.
- Show→(all Columns / Sequences / Sequences and Columns)
  All hidden Columns / Sequences / Sequences and Columns will be revealed.
- Hide→(all Columns / Sequences / Selected Region / All but Selected Region)
  Hides the currently selected Columns / Sequences / Region or everything but the selected Region.
- Automatic Scrolling
  When selected, the view will automatically scroll to display the highlighted sequence position corresponding to the position under the mouse pointer in a linked alignment or structure view.
- Show Sequence Features
  Show or hide sequence features on this alignment.
- Sequence Feature Settings...
  Opens the Sequence Feature Settings dialog box to control the colour and display of sequence features on the alignment.
- Sequence ID Tooltip (application only)
  This submenu's options allow the inclusion or exclusion of non-positional sequence features or database cross references from the tooltip shown when the mouse hovers over the sequence ID panel.
- Alignment Properties...
  Displays some simple statistics computed for the current alignment view and any named properties defined on the whole alignment.
- Overview Window
  A scaled version of the alignment will be displayed in a small window. A red box will indicate the currently visible area of the alignment. Move the visible region using the mouse.