#NEXUS
BEGIN TAXA;
    TITLE Untitled_TAXA_Block_1;
    DIMENSIONS NTax = 8;
    TAXLABELS A B C D E F G H;
END;
BEGIN CHARACTERS;
    TITLE Untitled_CHARACTERS_Block_1;
    LINK TAXA = Untitled_TAXA_Block_1;
    DIMENSIONS NChar=9;
    FORMAT Datatype=Protein  Gap=-;
    CHARLABELS one two three four five six seven eight nine;
Matrix
A     THIS-IS-A
B     THIS-IS-B
C     THIS-IS-C
D     THIS-IS-D
E     THIS-IS-E
F     THIS-IS-F
G     THIS-IS-G
H     THIS-IS-H
;
END;
BEGIN TREES;
    TITLE Untitled_TREES_Block_1;
    LINK TAXA = Untitled_TAXA_Block_1;
    TRANSLATE
        1 A,
        2 B,
        3 C,
        4 D,
        5 E,
        6 F,
        7 G,
        8 H;
    TREE basic_rake = [&R](1:1.0,(2:1.0,3:1.0):3.14159[&&NHX:B=100:D=Y:E=1.1.1.1:S=Primates],4:1.0[&&NHX:Co=Y:D=Y:E=1.1.1.1:S=Primates],5:1.0,6:1.0,7:1.0,8:1.0);
END;
BEGIN CODONS;
    LINK CHARACTERS = Untitled_CHARACTERS_Block_1;
    CodeSet * UNTITLED = universal : 1-9;
END;
BEGIN SETS;
    LINK CHARACTERS = Untitled_CHARACTERS_Block_1;
    CHARSET UNTITLED = 1-4 7-9;
    CHARSET UNTITLEDo = 1 3 4 7-9;
END;
BEGIN ASSUMPTIONS;
    LINK CHARACTERS = Untitled_CHARACTERS_Block_1;
    TypeSet * UNTITLED = unord : 1-9;
END;
BEGIN MESQUITECHARMODELS;
    ProbModelSet * UNTITLED = 'Mk1 (est.)' : 1 - 9;
END;
BEGIN MESQUITE;
    MESQUITESCRIPTVERSION 2;
    TITLE AUTO;
    tell ProjectCoordinator;
    getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
    tell It;
    setID 0 2002854640106134798;
    endTell;
    getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
    tell It;
    setID 0 5914780497712519392;
    checksum 0 1033486703 null;
    endTell;
    getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
    tell It;
    showDataWindow #5914780497712519392 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
    tell It;
    getWindow;
    tell It;
    setExplanationSize 30;
    setAnnotationSize 20;
    setFontIncAnnot 0;
    setFontIncExp 0;
    setSize 700 564;
    setLocation 370 38;
    setFont SanSerif;
    setFontSize 10;
    getToolPalette;
    tell It;
    endTell;
    setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
    colorCells #mesquite.charMatrices.ColorByState.ColorByState;
    setBackground White;
    toggleShowNames on;
    toggleShowTaxonNames on;
    toggleTight off;
    toggleShowChanges off;
    toggleSeparateLines off;
    toggleShowStates on;
    toggleAutoWCharNames off;
    toggleShowDefaultCharNames off;
    toggleConstrainCW on;
    setColumnWidth 16;
    toggleBirdsEye off;
    toggleColorsPanel off;
    birdsEyeWidth 2;
    toggleLinkedScrolling on;
    toggleScrollLinkedTables off;
    endTell;
    showWindow;
    getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
    tell It;
    showStrip off;
    endTell;
    getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
    tell It;
    togglePanel off;
    endTell;
    getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
    tell It;
    showStrip off;
    endTell;
    getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
    tell It;
    setColor Red;
    removeColor off;
    endTell;
    getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
    tell It;
    autotabOff;
    endTell;
    getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
    tell It;
    gapCosts 8 3 2 2;
    subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
    endTell;
    endTell;
    endTell;
    endTell;
END;
