/*******************************************************************************
*
* McCode, neutron/xray ray-tracing package
*         Copyright (C) 1997-2009, All rights reserved
*         Risoe National Laboratory, Roskilde, Denmark
*         Institut Laue Langevin, Grenoble, France
*
* Runtime: share/mccode-r.h
*
* %Identification
* Written by: KN
* Date:    Aug 29, 1997
* Release: @MCCODE_NAME@ @MCCODE_VERSION@
* Version: $Revision$
*
* Runtime system header for McStas/McXtrace.
*
* In order to use this library as an external library, the following variables
* and macros must be declared (see details in the code)
*
*   struct mcinputtable_struct mcinputtable[];
*   int numipar;
*   metadata_table_t metadata_table[];
*   int num_metadata;
*   char instrument_name[], instrument_source[];
*   int traceenabled, defaultmain;
*   extern MCNUM  mccomp_storein[];
*   extern MCNUM  mcAbsorbProp[];
*   extern MCNUM  mcScattered;
*   #define MCCODE_STRING "the McStas/McXtrace version"
*
* Usage: Automatically embbeded in the c code.
*
* $Id$
*
*******************************************************************************/

#ifndef MCCODE_R_H
#define MCCODE_R_H "$Revision$"

#include <string.h>
#include <stdlib.h>
#include <stdio.h>
#include <stdarg.h>
#include <limits.h>
#include <errno.h>
#include <time.h>
#ifndef _MSC_EXTENSIONS
#include <sys/time.h>
#endif
#include <float.h>
#include <inttypes.h>
#include <stdint.h>
#ifdef OPENACC
#include <openacc.h>
#ifndef GCCOFFLOAD
#include <accelmath.h>
#else
#include <math.h>
#endif
#pragma acc routine
int noprintf();
#pragma acc routine
size_t str_len(const char *s);
#else
#include <math.h>
#endif

/* In case of gcc / clang, ensure to use
   the built-in isnan/isinf functions */
#if defined(__GNUC__) || defined(__clang__)
#  ifdef isnan
#    undef isnan
#  endif
#  ifdef isinf
#    undef isinf
#  endif
#  define isnan(x) __builtin_isnan(x)
#  define isinf(x) __builtin_isinf(x)
#endif

#ifdef _MSC_EXTENSIONS
#ifndef _TIMES_H
#define _TIMES_H

#ifdef _WIN32
#include <sys/timeb.h>
#include <sys/types.h>
#include <winsock2.h>

int gettimeofday(struct timeval* t,void* timezone);

#define __need_clock_t
#include <time.h>


/* Structure describing CPU time used by a process and its children.  */
struct tms
  {
    clock_t tms_utime;          /* User CPU time.  */
    clock_t tms_stime;          /* System CPU time.  */

    clock_t tms_cutime;         /* User CPU time of dead children.  */
    clock_t tms_cstime;         /* System CPU time of dead children.  */
  };

/* Store the CPU time used by this process and all its
   dead children (and their dead children) in BUFFER.
   Return the elapsed real time, or (clock_t) -1 for errors.
   All times are in CLK_TCKths of a second.  */
clock_t times (struct tms *__buffer);

typedef long long suseconds_t ;



int gettimeofday(struct timeval* t,void* timezone)
{       struct _timeb timebuffer;
        _ftime( &timebuffer );
        t->tv_sec=timebuffer.time;
        t->tv_usec=1000*timebuffer.millitm;
		return 0;
}

clock_t times (struct tms *__buffer) {

	__buffer->tms_utime = clock();
	__buffer->tms_stime = 0;
	__buffer->tms_cstime = 0;
	__buffer->tms_cutime = 0;
	return __buffer->tms_utime;
}


#endif
#endif
#endif

/* If the runtime is embedded in the simulation program, some definitions can
   be made static. */

#ifdef MC_EMBEDDED_RUNTIME
#  define mcstatic
#else
#  define mcstatic
#endif

#ifdef __dest_os
#  if (__dest_os == __mac_os)
#    define MAC
#  endif
#endif

#ifdef __FreeBSD__
#  define NEED_STAT_H
#endif

#if defined(__APPLE__) && defined(__GNUC__)
#  define NEED_STAT_H
#endif

#ifdef WIN32
#  define NEED_STAT_H
#  define NEED_TYPES_H
#endif

#ifdef NEED_STAT_H
#  include <sys/stat.h>
#endif

#ifdef NEED_TYPES_H
#  include <sys/types.h>
#endif

#ifndef MC_PATHSEP_C
#  ifdef WIN32
#    define MC_PATHSEP_C '\\'
#    define MC_PATHSEP_S "\\"
#  else  /* !WIN32 */
#    define MC_PATHSEP_C '/'
#    define MC_PATHSEP_S "/"
#  endif /* !WIN32 */
#endif /* MC_PATHSEP_C */

#ifdef WIN32
#  define mkdir(a,b) mkdir(a)
#  define getpid() NULL
#endif

/* the version string is replaced when building distribution with mkdist */
#ifndef MCCODE_STRING
#  define MCCODE_STRING "@MCCODE_STRING@"
#endif

#ifndef MCCODE_DATE
#  define MCCODE_DATE "@MCCODE_DATE@"
#endif

#ifndef MCCODE_VERSION
#  define MCCODE_VERSION "@MCCODE_VERSION@"
#endif

#ifndef __MCCODE_VERSION__
#define __MCCODE_VERSION__ @MCCODE_VERSION_MACRO@L
#endif

#ifndef MCCODE_NAME
#  define MCCODE_NAME "@MCCODE_NAME@"
#endif

#ifndef MCCODE_PARTICLE
#  define MCCODE_PARTICLE "@MCCODE_PARTICLE@"
#endif

#ifndef MCCODE_PARTICLE_CODE
#  define MCCODE_PARTICLE_CODE @MCCODE_PARTICLE_CODE@
#endif

#ifndef MCCODE_LIBENV
#  define MCCODE_LIBENV "@MCCODE_LIBENV@"
#endif

#ifndef FLAVOR_UPPER
#  define FLAVOR_UPPER MCCODE_NAME
#endif

#ifdef MC_PORTABLE
#  ifndef NOSIGNALS
#    define NOSIGNALS 1
#  endif
#endif

#ifdef MAC
#  ifndef NOSIGNALS
#    define NOSIGNALS 1
#  endif
#endif

#if (USE_MPI == 0)
#  undef USE_MPI
#endif

#ifdef USE_MPI  /* default is to disable signals with MPI, as MPICH uses them to communicate */
#  ifndef NOSIGNALS
#    define NOSIGNALS 1
#  endif
#endif

#ifdef OPENACC  /* default is to disable signals with PGI/OpenACC */
#  ifndef NOSIGNALS
#    define NOSIGNALS 1
#  endif
#endif

#ifndef OPENACC
#  ifndef USE_OFF  /* default is to enable OFF when not using PGI/OpenACC */
#    define USE_OFF
#  endif
#  ifndef CPUFUNNEL  /* allow to enable FUNNEL-mode on CPU */
#  ifdef FUNNEL      /* by default disable FUNNEL-mode when not using PGI/OpenACC */
#    undef FUNNEL
#  endif
#  endif
#endif

#if (NOSIGNALS == 0)
#  undef NOSIGNALS
#endif

/** Header information for metadata-r.c ----------------------------------------------------------------------------- */
struct metadata_table_struct { /* stores metadata strings from components */
  char * source;  // component name which provided the metadata
  char * name;    // the name of the metadata
  char * type;    // the MIME type of the metadata (free form, valid identifier)
  char * value;   // the metadata string contents
};
typedef struct metadata_table_struct metadata_table_t;
char * metadata_table_key_component(char* key);
char * metadata_table_key_literal(char * key);
int metadata_table_defined(int, metadata_table_t *, char *);
char * metadata_table_name(int, metadata_table_t *, char *);
char * metadata_table_type(int, metadata_table_t *, char *);
char * metadata_table_literal(int, metadata_table_t *, char *);
void metadata_table_print_all_keys(int no, metadata_table_t * tab);
int metadata_table_print_all_components(int no, metadata_table_t * tab);
int metadata_table_print_component_keys(int no, metadata_table_t * tab, char * key);
/* -------------------------------------------------------------------------- Header information for metadata-r.c --- */

/* Note: the enum instr_formal_types definition MUST be kept
   synchronized with the one in mccode.h and with the
   instr_formal_type_names array in cogen.c. */
enum instr_formal_types
  {
    instr_type_int,
    instr_type_string, instr_type_char,
    instr_type_vector, instr_type_double
  };
struct mcinputtable_struct { /* defines instrument parameters */
  char *name; /* name of parameter */
  void *par;  /* pointer to instrument parameter (variable) */
  enum instr_formal_types type;
  char *val;  /* default value */
  char *unit; /* expected unit for parameter; informational only */
};


#ifndef MCCODE_BASE_TYPES
typedef double MCNUM;
typedef struct {MCNUM x, y, z;} Coords;
typedef MCNUM Rotation[3][3];
#endif

/* the following variables are defined in the McStas generated C code
   but should be defined externally in case of independent library usage */
#ifndef DANSE
extern struct mcinputtable_struct mcinputtable[];         /* list of instrument parameters */
extern int    numipar;                                    /* number of instrument parameters */
extern metadata_table_t metadata_table[];                 /* list of component-defined string metadata */
extern int    num_metadata;                               /* number of component-defined string metadata */
extern char   instrument_name[], instrument_source[]; /* instrument name and filename */
extern char  *instrument_exe;                           /* executable path = argv[0] or NULL */
extern char   instrument_code[];                        /* contains the initial 'instr' file */

#ifndef MC_ANCIENT_COMPATIBILITY
extern int traceenabled, defaultmain;
#endif
#endif


/* Useful macros ============================================================ */


/* SECTION: Dynamic Arrays */
typedef int* IArray1d;
IArray1d create_iarr1d(int n);
void destroy_iarr1d(IArray1d a);

typedef int** IArray2d;
IArray2d create_iarr2d(int nx, int ny);
void destroy_iarr2d(IArray2d a);

typedef int*** IArray3d;
IArray3d create_iarr3d(int nx, int ny, int nz);
void destroy_iarr3d(IArray3d a);

typedef double* DArray1d;
DArray1d create_darr1d(int n);
void destroy_darr1d(DArray1d a);

typedef double** DArray2d;
DArray2d create_darr2d(int nx, int ny);
void destroy_darr2d(DArray2d a);

typedef double*** DArray3d;
DArray3d create_darr3d(int nx, int ny, int nz);
void destroy_darr3d(DArray3d a);


/* MPI stuff */
#ifdef USE_MPI
#include "mpi.h"

#ifdef OMPI_MPI_H  /* openmpi does not use signals: we may install our sighandler */
#ifndef OPENACC    /* ... but only if we are not also running on GPU */
#undef NOSIGNALS
#endif
#endif

/*
 * MPI_MASTER(i):
 * execution of i only on master node
 */
#define MPI_MASTER(statement) { \
  if(mpi_node_rank == mpi_node_root)\
  { statement; } \
}

#ifndef MPI_REDUCE_BLOCKSIZE
#define MPI_REDUCE_BLOCKSIZE 100000
#endif

int mc_MPI_Sum(double* buf, long count);
int mc_MPI_Send(void *sbuf, long count, MPI_Datatype dtype, int dest);
int mc_MPI_Recv(void *rbuf, long count, MPI_Datatype dtype, int source);

/* MPI_Finalize exits gracefully and should be preferred to MPI_Abort */
#define exit(code) do {                                   \
    MPI_Finalize();                                       \
    exit(code);                                           \
  } while(0)

#else /* !USE_MPI */
#define MPI_MASTER(instr) instr
#endif /* USE_MPI */


#ifdef USE_MPI
static int mpi_node_count;
#endif

#ifdef USE_THREADS  /* user want threads */
#error Threading (USE_THREADS) support has been removed for very poor efficiency. Use MPI/SSH grid instead.
#endif


void   mcset_ncount(unsigned long long count);    /* wrapper to get mcncount */
#pragma acc routine
unsigned long long int mcget_ncount(void);            /* wrapper to set mcncount */
unsigned long long mcget_run_num(void);           /* wrapper to get mcrun_num=0:mcncount-1 */

/* Following part is only embedded when not redundant with mccode.h ========= */

#ifndef MCCODE_H

#ifndef NOSIGNALS
#include <signal.h>
char  *mcsig_message;
#define SIG_MESSAGE(msg) mcsig_message=(char *)(msg);
#else
#define SIG_MESSAGE(...)
#endif /* !NOSIGNALS */


/* Useful macros and constants ============================================== */


#ifndef FLT_MAX
#define FLT_MAX         3.40282347E+38F /* max decimal value of a "float" */
#endif

#ifndef MIN
#define MIN(a, b)  (((a) < (b)) ? (a) : (b))
#endif
#ifndef MAX
#define MAX(a, b)  (((a) > (b)) ? (a) : (b))
#endif
#ifndef SQR
#define SQR(x) ( (x) * (x) )
#endif
#ifndef SIGN
#define SIGN(x) (((x)>0.0)?(1):(-1))
#endif


#  ifndef M_E
#    define M_E        2.71828182845904523536  // e
#  endif
#  ifndef M_LOG2E
#    define M_LOG2E    1.44269504088896340736  //  log2(e)
#  endif
#  ifndef M_LOG10E
#    define M_LOG10E   0.434294481903251827651 //  log10(e)
#  endif
#  ifndef M_LN2
#    define M_LN2      0.693147180559945309417 //  ln(2)
#  endif
#  ifndef M_LN10
#    define M_LN10     2.30258509299404568402  //  ln(10)
#  endif
#  ifndef M_PI
#    define M_PI       3.14159265358979323846  //  pi
#  endif
#  ifndef PI
#    define PI       M_PI                      //  pi - also used in some places
#  endif
#  ifndef M_PI_2
#    define M_PI_2     1.57079632679489661923  //  pi/2
#  endif
#  ifndef M_PI_4
#    define M_PI_4     0.785398163397448309616 //  pi/4
#  endif
#  ifndef M_1_PI
#    define M_1_PI     0.318309886183790671538 //  1/pi
#  endif
#  ifndef M_2_PI
#    define M_2_PI     0.636619772367581343076 //  2/pi
#  endif
#  ifndef M_2_SQRTPI
#    define M_2_SQRTPI 1.12837916709551257390  //  2/sqrt(pi)
#  endif
#  ifndef M_SQRT2
#    define M_SQRT2    1.41421356237309504880  //  sqrt(2)
#  endif
#  ifndef M_SQRT1_2
#    define M_SQRT1_2  0.707106781186547524401 //  1/sqrt(2)
#  endif

#define RAD2MIN  ((180*60)/PI)
#define MIN2RAD  (PI/(180*60))
#define DEG2RAD  (PI/180)
#define RAD2DEG  (180/PI)
#define FWHM2RMS 0.424660900144    /* Convert between full-width-half-max and */
#define RMS2FWHM 2.35482004503     /* root-mean-square (standard deviation) */
#define HBAR     1.05457168e-34    /* [Js] h bar Planck constant CODATA 2002 */
#define MNEUTRON 1.67492728e-27    /* [kg] mass of neutron CODATA 2002 */
#define GRAVITY  9.81              /* [m/s^2] gravitational acceleration */
#define NA       6.02214179e23     /* [#atoms/g .mole] Avogadro's number*/


#define UNSET nan("0x6E6F74736574")
int nans_match(double, double);
int is_unset(double);
int is_valid(double);
int is_set(double);
int all_unset(int n, ...);
int all_set(int n, ...);
int any_unset(int n, ...);
int any_set(int n, ...);


/* wrapper to get absolute and relative position of comp */
/* mccomp_posa and mccomp_posr are defined in McStas generated C code */
#define POS_A_COMP_INDEX(index) (instrument->_position_absolute[index])
#define POS_R_COMP_INDEX(index) (instrument->_position_relative[index])

/* setting parameters based COMP_GETPAR (returned as pointer)         */
/* compname must be given as a string, type and par are symbols.      */
#define COMP_GETPAR3(type, compname, par) \
    &( ((_class_ ## type ##_parameters *) _getvar_parameters(compname))->par )
/* the body of this function depends on component instances, and is cogen'd */
void* _getvar_parameters(char* compname);

int _getcomp_index(char* compname);

/* Note: The two-stage approach to COMP_GETPAR is NOT redundant; without it,
* after #define C sample, COMP_GETPAR(C,x) would refer to component C, not to
* component sample. Such are the joys of ANSI C.

* Anyway the usage of COMP_GETPAR requires that we use sometimes bare names...
* NOTE: This can ONLY be used in instrument descriptions, not components.
*/
#define COMP_GETPAR2(comp, par) (_ ## comp ## _var._parameters.par)
#define COMP_GETPAR(comp, par) COMP_GETPAR2(comp,par)

#define INSTRUMENT_GETPAR(par) (_instrument_var._parameters.par)

/* Current component name, index, position and orientation */
/* These macros work because, using class-based functions, "comp" is usually
*  the local variable of the active/current component. */
#define INDEX_CURRENT_COMP (_comp->_index)
#define NAME_CURRENT_COMP (_comp->_name)
#define TYPE_CURRENT_COMP (_comp->_type)
#define POS_A_CURRENT_COMP (_comp->_position_absolute)
#define POS_R_CURRENT_COMP (_comp->_position_relative)
#define ROT_A_CURRENT_COMP (_comp->_rotation_absolute)
#define ROT_R_CURRENT_COMP (_comp->_rotation_relative)

#define NAME_INSTRUMENT (instrument->_name)


/* MCDISPLAY/trace and debugging message sent to stdout */
#ifdef MC_TRACE_ENABLED
#define DEBUG
#endif

#ifdef DEBUG
#define DEBUG_INSTR() if(!mcdotrace); else { printf("INSTRUMENT:\n"); printf("Instrument '%s' (%s)\n", instrument_name, instrument_source); }
#define DEBUG_COMPONENT(name,c,t) if(!mcdotrace); else {\
     printf("COMPONENT: \"%s\"\n"					  \
     "POS: %g, %g, %g, %g, %g, %g, %g, %g, %g, %g, %g, %g\n", \
     name, c.x, c.y, c.z, t[0][0], t[0][1], t[0][2], \
     t[1][0], t[1][1], t[1][2], t[2][0], t[2][1], t[2][2]); \
     printf("Component %30s AT (%g,%g,%g)\n", name, c.x, c.y, c.z); }
#define DEBUG_INSTR_END() if(!mcdotrace); else printf("INSTRUMENT END:\n");
#define DEBUG_ENTER() if(!mcdotrace); else printf("ENTER:\n");
#define DEBUG_COMP(c) if(!mcdotrace); else printf("COMP: \"%s\"\n", c);
#define DEBUG_LEAVE() if(!mcdotrace); else printf("LEAVE:\n");
#define DEBUG_ABSORB() if(!mcdotrace); else printf("ABSORB:\n");
#else
#define DEBUG_INSTR()
#define DEBUG_COMPONENT(name,c,t)
#define DEBUG_INSTR_END()
#define DEBUG_ENTER()
#define DEBUG_COMP(c)
#define DEBUG_LEAVE()
#define DEBUG_ABSORB()
#endif

// mcDEBUG_STATE and mcDEBUG_SCATTER are defined by mcstas-r.h and mcxtrace-r.h



#ifdef TEST
#define test_printf printf
#else
#define test_printf while(0) printf
#endif

/* send MCDISPLAY message to stdout to show gemoetry */
void mcdis_magnify(char *what);
void mcdis_line(double x1, double y1, double z1,
                double x2, double y2, double z2);
void mcdis_dashed_line(double x1, double y1, double z1,
		       double x2, double y2, double z2, int n);
void mcdis_multiline(int count, ...);
void mcdis_rectangle(char* plane, double x, double y, double z,
		     double width, double height);
void mcdis_box(double x, double y, double z,
	       double width, double height, double length, double thickness, double nx, double ny, double nz);
void mcdis_circle(char *plane, double x, double y, double z, double r);
void mcdis_Circle(double x, double y, double z, double r, double nx, double ny, double nz);
void mcdis_cylinder( double x, double y, double z,
		     double r, double height, double thickness, double nx, double ny, double nz);
void mcdis_cone( double x, double y, double z,
        double r, double height, double nx, double ny, double nz);
void mcdis_sphere(double x, double y, double z, double r);


/* random number generation. ================================================ */

/* available random number generators */
#define _RNG_ALG_MT         1
#define _RNG_ALG_KISS       2

/* selection of random number generator */
#ifndef RNG_ALG
#  define RNG_ALG  _RNG_ALG_KISS
#endif


#if RNG_ALG == _RNG_ALG_MT  // MT (currently not functional for gpu)
#  define MC_RAND_MAX ((unsigned long)0xffffffff)
#  define randstate_t unsigned long // this could be anything
#  define RANDSTATE_LEN 1
#  define srandom(seed) mt_srandom_empty()
#  define random() mt_random()
#  define _random() mt_random()
#elif RNG_ALG == _RNG_ALG_KISS  // KISS
#  ifndef ULONG_MAX
#    define ULONG_MAX ((unsigned long)0xffffffffffffffffUL)
#  endif
#  define MC_RAND_MAX ULONG_MAX
#  define randstate_t unsigned long
#  define RANDSTATE_LEN 7
#  define srandom(seed) kiss_srandom(_particle->randstate, seed)
#  define random() kiss_random(_particle->randstate)
#  define _random() kiss_random(state)
#endif

#pragma acc routine
double _randnorm2(randstate_t* state);


// component writers interface
#define randnorm() _randnorm2(_particle->randstate) // NOTE: can not use _randnorm on gpu
#define rand01() _rand01(_particle->randstate)
#define randpm1() _randpm1(_particle->randstate)
#define rand0max(p1) _rand0max(p1, _particle->randstate)
#define randminmax(p1, p2) _randminmax(p1, p2, _particle->randstate)
#define randtriangle() _randtriangle(_particle->randstate)

// Mersenne Twister rng
unsigned long mt_random(void);
void mt_srandom (unsigned long x);
void mt_srandom_empty();

// KISS rng
#pragma acc routine
unsigned long *kiss_srandom(unsigned long state[7], unsigned long seed);
#pragma acc routine
unsigned long kiss_random(unsigned long state[7]);

// Scrambler / hash function
#pragma acc routine seq
randstate_t _hash(randstate_t x);

// internal RNG (transforms) interface
#pragma acc routine
double _rand01(randstate_t* state);
#pragma acc routine
double _randpm1(randstate_t* state);
#pragma acc routine
double _rand0max(double max, randstate_t* state);
#pragma acc routine
double _randminmax(double min, double max, randstate_t* state);
#pragma acc routine
double _randtriangle(randstate_t* state);


#ifdef USE_OPENCL
#include "opencl-lib.h"
#include "opencl-lib.c"
#endif

#ifndef DANSE
int init(void);
int raytrace(_class_particle*);
int save(FILE *);
int finally(void);
int display(void);
#endif


/* GPU related algorithms =================================================== */

/*
*  Divide-and-conquer strategy for parallel sort absorbed last.
*/
#ifdef FUNNEL
long sort_absorb_last(_class_particle* particles, _class_particle* pbuffer, long len, long buffer_len, long flag_split, long* multiplier);
#endif
long sort_absorb_last_serial(_class_particle* particles, long len);


/* simple vector algebra ==================================================== */


#define vec_prod(x, y, z, x1, y1, z1, x2, y2, z2) \
	vec_prod_func(&x, &y, &z, x1, y1, z1, x2, y2, z2)
#pragma acc routine seq
mcstatic void vec_prod_func(double *x, double *y, double *z,
		double x1, double y1, double z1, double x2, double y2, double z2);

#pragma acc routine seq
mcstatic double scalar_prod(
		double x1, double y1, double z1, double x2, double y2, double z2);

#pragma acc routine seq
mcstatic void norm_func(double *x, double *y, double *z);
#define NORM(x,y,z)	norm_func(&x, &y, &z)

#pragma acc routine seq
void normal_vec(double *nx, double *ny, double *nz,
    double x, double y, double z);

/**
 * Rotate the vector vx,vy,vz psi radians around the vector ax,ay,az
 * and put the result in x,y,z.
 */
#define rotate(x, y, z, vx, vy, vz, phi, ax, ay, az) \
  do { \
    double mcrt_tmpx = (ax), mcrt_tmpy = (ay), mcrt_tmpz = (az); \
    double mcrt_vp, mcrt_vpx, mcrt_vpy, mcrt_vpz; \
    double mcrt_vnx, mcrt_vny, mcrt_vnz, mcrt_vn1x, mcrt_vn1y, mcrt_vn1z; \
    double mcrt_bx, mcrt_by, mcrt_bz; \
    double mcrt_cos, mcrt_sin; \
    NORM(mcrt_tmpx, mcrt_tmpy, mcrt_tmpz); \
    mcrt_vp = scalar_prod((vx), (vy), (vz), mcrt_tmpx, mcrt_tmpy, mcrt_tmpz); \
    mcrt_vpx = mcrt_vp*mcrt_tmpx; \
    mcrt_vpy = mcrt_vp*mcrt_tmpy; \
    mcrt_vpz = mcrt_vp*mcrt_tmpz; \
    mcrt_vnx = (vx) - mcrt_vpx; \
    mcrt_vny = (vy) - mcrt_vpy; \
    mcrt_vnz = (vz) - mcrt_vpz; \
    vec_prod(mcrt_bx, mcrt_by, mcrt_bz, \
             mcrt_tmpx, mcrt_tmpy, mcrt_tmpz, mcrt_vnx, mcrt_vny, mcrt_vnz); \
    mcrt_cos = cos((phi)); mcrt_sin = sin((phi)); \
    mcrt_vn1x = mcrt_vnx*mcrt_cos + mcrt_bx*mcrt_sin; \
    mcrt_vn1y = mcrt_vny*mcrt_cos + mcrt_by*mcrt_sin; \
    mcrt_vn1z = mcrt_vnz*mcrt_cos + mcrt_bz*mcrt_sin; \
    (x) = mcrt_vpx + mcrt_vn1x; \
    (y) = mcrt_vpy + mcrt_vn1y; \
    (z) = mcrt_vpz + mcrt_vn1z; \
  } while(0)

/**
 * Mirror (xyz) in the plane given by the point (rx,ry,rz) and normal (nx,ny,nz)
 *
 * TODO: This define is seemingly never used...
 */
#define mirror(x,y,z,rx,ry,rz,nx,ny,nz) \
  do { \
    double mcrt_tmpx= (nx), mcrt_tmpy = (ny), mcrt_tmpz = (nz); \
    double mcrt_tmpt; \
    NORM(mcrt_tmpx, mcrt_tmpy, mcrt_tmpz); \
    mcrt_tmpt=scalar_prod((rx),(ry),(rz),mcrt_tmpx,mcrt_tmpy,mcrt_tmpz); \
    (x) = rx -2 * mcrt_tmpt*mcrt_rmpx; \
    (y) = ry -2 * mcrt_tmpt*mcrt_rmpy; \
    (z) = rz -2 * mcrt_tmpt*mcrt_rmpz; \
  } while (0)

#pragma acc routine
Coords coords_set(MCNUM x, MCNUM y, MCNUM z);
#pragma acc routine
Coords coords_get(Coords a, MCNUM *x, MCNUM *y, MCNUM *z);
#pragma acc routine
Coords coords_add(Coords a, Coords b);
#pragma acc routine
Coords coords_sub(Coords a, Coords b);
#pragma acc routine
Coords coords_neg(Coords a);
#pragma acc routine
Coords coords_scale(Coords b, double scale);
#pragma acc routine
double coords_sp(Coords a, Coords b);
#pragma acc routine
Coords coords_xp(Coords b, Coords c);
#pragma acc routine
double coords_len(Coords a);
#pragma acc routine seq
void   coords_print(Coords a);
#pragma acc routine seq
mcstatic void coords_norm(Coords* c);

#pragma acc routine seq
void rot_set_rotation(Rotation t, double phx, double phy, double phz);
#pragma acc routine seq
int  rot_test_identity(Rotation t);
#pragma acc routine seq
void rot_mul(Rotation t1, Rotation t2, Rotation t3);
#pragma acc routine seq
void rot_copy(Rotation dest, Rotation src);
#pragma acc routine seq
void rot_transpose(Rotation src, Rotation dst);
#pragma acc routine seq
Coords rot_apply(Rotation t, Coords a);

#pragma acc routine seq
void mccoordschange(Coords a, Rotation t, _class_particle *particle);
#pragma acc routine seq
void mccoordschange_polarisation(Rotation t, double *sx, double *sy, double *sz);

double mcestimate_error(double N, double p1, double p2);
void mcreadparams(void);

/* this is now in mcstas-r.h and mcxtrace-r.h as the number of state parameters
is no longer equal */

_class_particle mcgenstate(void);

// trajectory/shape intersection routines
#pragma acc routine seq
int inside_rectangle(double, double, double, double);
#pragma acc routine seq
int box_intersect(double *dt_in, double *dt_out, double x, double y, double z,
      double vx, double vy, double vz, double dx, double dy, double dz);
#pragma acc routine seq
int cylinder_intersect(double *t0, double *t1, double x, double y, double z,
      double vx, double vy, double vz, double r, double h);
#pragma acc routine seq
int sphere_intersect(double *t0, double *t1, double x, double y, double z,
      double vx, double vy, double vz, double r);
// second order equation roots
#pragma acc routine seq
int solve_2nd_order(double *t1, double *t2,
      double A,  double B,  double C);

// random vector generation to shape
// defines silently introducing _particle as the last argument
#define randvec_target_circle(xo, yo, zo, solid_angle, xi, yi, zi, radius) \
  _randvec_target_circle(xo, yo, zo, solid_angle, xi, yi, zi, radius, _particle)
#define randvec_target_rect_angular(xo, yo, zo, solid_angle, xi, yi, zi, height, width, A) \
  _randvec_target_rect_angular(xo, yo, zo, solid_angle, xi, yi, zi, height, width, A, _particle)
#define randvec_target_rect_real(xo, yo, zo, solid_angle, xi, yi, zi, height, width, A, lx, ly, lz, order) \
  _randvec_target_rect_real(xo, yo, zo, solid_angle, xi, yi, zi, height, width, A, lx, ly, lz, order, _particle)
// defines forwarding to "inner" functions
#define randvec_target_sphere randvec_target_circle
#define randvec_target_rect(p0,p1,p2,p3,p4,p5,p6,p7,p8,p9) \
  randvec_target_rect_real(p0,p1,p2,p3,p4,p5,p6,p7,p8,p9,0,0,0,1)
// headers for randvec
#pragma acc routine seq
void _randvec_target_circle(double *xo, double *yo, double *zo,
  double *solid_angle, double xi, double yi, double zi, double radius,
  _class_particle* _particle);
#pragma acc routine seq
void _randvec_target_rect_angular(double *xo, double *yo, double *zo,
  double *solid_angle, double xi, double yi, double zi, double height,
  double width, Rotation A,
  _class_particle* _particle);
#pragma acc routine seq
void _randvec_target_rect_real(double *xo, double *yo, double *zo, double *solid_angle,
  double xi, double yi, double zi, double height, double width, Rotation A,
  double lx, double ly, double lz, int order,
  _class_particle* _particle);


// this is the main()
int mccode_main(int argc, char *argv[]);


#endif /* !MCCODE_H */

#ifndef MCCODE_R_IO_H
#define MCCODE_R_IO_H "$Revision$"

#if (USE_NEXUS == 0)
#undef USE_NEXUS
#endif

#ifndef CHAR_BUF_LENGTH
#define CHAR_BUF_LENGTH 1024
#endif


/* I/O section part ========================================================= */

/* ========================================================================== */

/*                               MCCODE_R_IO_C                                */

/* ========================================================================== */


/* main DETECTOR structure which stores most information to write to data files */
struct mcdetector_struct {
  char   filename[CHAR_BUF_LENGTH];   /* file name of monitor */
  double Position[3];                 /* position of detector component*/
  char   position[CHAR_BUF_LENGTH];   /* position of detector component (string)*/
  Rotation Rotation;                  /* position of detector component*/
  char   options[CHAR_BUF_LENGTH];    /* Monitor_nD style list-mode'options' (string)*/
  char   component[CHAR_BUF_LENGTH];  /* component instance name */
  char   instrument[CHAR_BUF_LENGTH]; /* instrument name */
  char   type[CHAR_BUF_LENGTH];       /* data type, e.g. 0d, 1d, 2d, 3d */
  char   user[CHAR_BUF_LENGTH];       /* user name, e.g. HOME */
  char   date[CHAR_BUF_LENGTH];       /* date of simulation end/write time */
  char   title[CHAR_BUF_LENGTH];      /* title of detector */
  char   xlabel[CHAR_BUF_LENGTH];     /* X axis label */
  char   ylabel[CHAR_BUF_LENGTH];     /* Y axis label */
  char   zlabel[CHAR_BUF_LENGTH];     /* Z axis label */
  char   xvar[CHAR_BUF_LENGTH];       /* X variable name */
  char   yvar[CHAR_BUF_LENGTH];       /* Y variable name */
  char   zvar[CHAR_BUF_LENGTH];       /* Z variable name */
  char   ncount[CHAR_BUF_LENGTH];     /* number of events initially generated */
  char   limits[CHAR_BUF_LENGTH];     /* X Y Z limits, e.g. [xmin xmax ymin ymax zmin zmax] */
  char   variables[CHAR_BUF_LENGTH];  /* variables written into data block */
  char   statistics[CHAR_BUF_LENGTH]; /* center, mean and half width along axis */
  char   signal[CHAR_BUF_LENGTH];     /* min max and mean of signal (data block) */
  char   values[CHAR_BUF_LENGTH];     /* integrated values e.g. [I I_err N] */
  double xmin,xmax;                   /* min max of axes */
  double ymin,ymax;
  double zmin,zmax;
  double intensity;                   /* integrated values for data block */
  double error;
  double events;
  double min;                         /* statistics for data block */
  double max;
  double mean;
  double centerX;                     /* statistics for axes */
  double halfwidthX;
  double centerY;
  double halfwidthY;
  int    rank;                        /* dimensionaly of monitor, e.g. 0 1 2 3 */
  char   istransposed;                /* flag to transpose matrix for some formats */

  long   m,n,p;                       /* dimensions of data block and along axes */
  long   date_l;                      /* same as date, but in sec since 1970 */

  double *p0, *p1, *p2;               /* pointers to saved data, NULL when freed */
  char   format[CHAR_BUF_LENGTH];    /* format for file generation */
};

typedef struct mcdetector_struct MCDETECTOR;

static   char *dirname             = NULL;      /* name of output directory */
static   char *siminfo_name        = "mccode";  /* default output sim file name */
char    *mcformat                    = NULL;      /* NULL (default) or a specific format */

/* file I/O definitions and function prototypes */

#ifndef MC_EMBEDDED_RUNTIME /* the mcstatic variables (from mccode-r.c) */
extern FILE * siminfo_file;     /* handle to the output siminfo file */
extern int    mcgravitation;      /* flag to enable gravitation */
extern int    mcdotrace;          /* flag to print MCDISPLAY messages */
#else
mcstatic FILE *siminfo_file        = NULL;
#endif

/* I/O function prototypes ================================================== */

// from msysgit: https://code.google.com/p/msysgit/source/browse/compat/strcasestr.c
char *strcasestr(const char *haystack, const char *needle);

/* output functions */
MCDETECTOR mcdetector_out_0D(char *t, double p0, double p1, double p2, char *c, Coords pos, Rotation rot);
MCDETECTOR mcdetector_out_1D(char *t, char *xl, char *yl,
                  char *xvar, double x1, double x2, long n,
                  double *p0, double *p1, double *p2, char *f, char *c, Coords pos, Rotation rot);
MCDETECTOR mcdetector_out_2D(char *t, char *xl, char *yl,
                  double x1, double x2, double y1, double y2, long m,
                  long n, double *p0, double *p1, double *p2, char *f,
                  char *c, Coords pos, Rotation rot);
MCDETECTOR mcdetector_out_list(char *t, char *xl, char *yl,
                  long m, long n,
                  double *p1, char *f,
	          char *c, Coords posa, Rotation rot,char* options);

/* wrappers to output functions, that automatically set NAME and POSITION */
#define DETECTOR_OUT(p0,p1,p2) mcdetector_out_0D(NAME_CURRENT_COMP,p0,p1,p2,NAME_CURRENT_COMP,POS_A_CURRENT_COMP,ROT_A_CURRENT_COMP)
#define DETECTOR_OUT_0D(t,p0,p1,p2) mcdetector_out_0D(t,p0,p1,p2,NAME_CURRENT_COMP,POS_A_CURRENT_COMP,ROT_A_CURRENT_COMP)
#define DETECTOR_OUT_1D(t,xl,yl,xvar,x1,x2,n,p0,p1,p2,f) \
     mcdetector_out_1D(t,xl,yl,xvar,x1,x2,n,p0,p1,p2,f,NAME_CURRENT_COMP,POS_A_CURRENT_COMP,ROT_A_CURRENT_COMP)
#define DETECTOR_OUT_2D(t,xl,yl,x1,x2,y1,y2,m,n,p0,p1,p2,f) \
     mcdetector_out_2D(t,xl,yl,x1,x2,y1,y2,m,n,p0,p1,p2,f,NAME_CURRENT_COMP,POS_A_CURRENT_COMP,ROT_A_CURRENT_COMP)

#ifdef USE_NEXUS
#include "napi.h"
NXhandle nxhandle;
#endif

#endif /* ndef MCCODE_R_IO_H */

#endif /* MCCODE_R_H */
