% This file was created with JabRef 2.6.
% Encoding: ANSI_X3.4-1968

@STRING{cjp = {Can. J. Phys.}}

@STRING{nim = {Nucl. Instr. Meth.}}

@STRING{nn = {Neutron News}}

@STRING{pb = {Physica B}}

@TECHREPORT{tas1_report,
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@ARTICLE{cjp_73_697,
  author = {T. E. Mason and K. N. Clausen and G. Aeppli and D. F. McMorrow and
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  title = {{RITA}: {T}he reinvented triple axis spectrometer},
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@ARTICLE{Mildner90,
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@BOOK{Shirane02,
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@ARTICLE{Vitess,
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@ARTICLE{mcstas_pb,
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@BOOK{mcstasmanual,
  title = {User and Programmers Guide to the Neutron Ray-Tracing Package McStas,
	Version 1.9},
  publisher = {Risoe Report},
  year = {2005},
  author = {Peter Willendrup and Emmanuel Farhi and Kim Lefmann and Klaus Lieutenant}
}

@book{mcxtracemanual,
  title={Users' and Programmers' Guide to the X-ray tracing Package McXtrace, version 1.2},
  publisher = {DTU Physics},
  year = {2014},
  author = {Knudsen, E. B. and  Willendrup, P. and Farhi, E. and Lefmann, K. and Schmidt, S.}
}

@BOOK{gavin,
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@ARTICLE{Zsigmond04,
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  journal = nim,
  year = {2004},
  volume = {A 529},
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}

@MISC{mcstas_webpage,
  note = {See http://www.mcstas.org}
}

@MISC{mcxtrace_webpage,
  note = {See http://www.mcxtrace.org}
}

@MISC{strawberry,
  note = {See http://www.strawberryperl.com}
}

@MISC{shadow_website,
  note = {See http://www.esrf.eu/computing/scientific/raytracing/}
}

@MISC{RAY_website,
  note = {See https://www.helmholtz-berlin.de/pubbin/vkart.pl?v=kquyy}
}

@incollection{schafers2008bessy,
  title={The BESSY raytrace program RAY},
  author={Sch{\"a}fers, Franz},
  booktitle={Modern Developments in X-Ray and Neutron Optics},
  pages={9--41},
  year={2008},
  publisher={Springer}
}

@MISC{trac_webpage,
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}

@misc{mccode_trac_webpage,
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}

@MISC{Xtrace_website,
  note = {See https://www.anka.kit.edu/1921_746.php}
}
@article{bauer2007simulation,
  title={Simulation of X-ray beamlines with the new ray tracing tool< i> X</i> Trace},
  author={Bauer, Sondes Trabelsi and Bauer, Martin and Steininger, Ralph and Baumbach, Tilo},
  journal={Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
  volume={582},
  number={1},
  pages={90--92},
  year={2007},
  publisher={Elsevier}
}

@MISC{active_state_webpage,
  note = {See http://www.activestate.com}
}

@MISC{crystallographica,
  note = {Crystallographica, Oxford Cryosystem, 1998. See http://www.crystallographica.com}
}

@MISC{debian_webpage,
  note = {See http://www.debian.org/}
}

@MISC{dev_cpp_webpage,
  note = {See http://www.bloodshed.net/devcpp.html}
}

@MISC{ess_webpage,
  note = {See http://www.ess-europe.de}
}

@MISC{Fullprof,
  note = {Fullprof powder refinement. See http://www-llb.cea.fr/fullweb/fp2k/fp2k.htm}
}

@MISC{IB_webpage,
  note = {See http://neutrons-dev.ornl.gov/eqsans/software/ib/}
}

@MISC{icsd_ill,
  note = {ICSD, Inorganic Crystal Structure Database. See http://icsd.ill.fr}
}

@MISC{mcnp_webpage,
  note = {See http://mcnpx.lanl.gov/ and http://mcnp.lanl.gov/}
}

@MISC{mcnsi_webpage,
  note = {See http://mcnsi.risoe.dk/}
}

@MISC{mczilla_webpage,
  note = {See http://trac.mccode.org/report}
}

@MISC{NADS_webpage,
  note = {http://code.google.com/p/jnads/}
}

@MISC{nexus_webpage,
  note = {See http://www.neutron.anl.gov/nexus/}
}

@MISC{nisp_webpage,
  note = {See http://strider.lansce.lanl.gov/NISP/Welcome.html}
}

@MISC{nmi3_webpage,
  note = {See http://neutron-eu.net/en/}
}

@MISC{scilab_webpage,
  note = {See http://www-rocq.inria.fr/scilab/}
}

@MISC{sns_webpage,
  note = {See http://www.sns.gov/}
}

@MISC{tripoli_webpage,
  note = {See http://www.nea.fr/html/dbprog/tripoli-abs.html}
}

@MISC{ts2_webpage,
  note = {See http://ts-2.isis.rl.ac.uk/}
}

@MISC{ts2_webpage_ess,
  note = {See http://www.ess-scandinavia.eu/}
}

@MISC{vitess_webpage,
  note = {See http://www.hmi.de/projects/ess/vitess/}
}

@misc{NIST-ffast,
  note = {See http://www.nist.gov/pml/data/ffast/index.cfm}
}


@misc{lcls,
  howpublished = {\url{https://slacportal.slac.stanford.edu/sites/lcls\_public/Pages/Default.aspx}},
  title = {{SLAC Linac Coherent Light Source}},
  author={LCLS},
  year = {2012}
}
@misc{sacla,
  howpublished = {\url{http://xfel.riken.jp/eng/index.html}},
  title = {{SPring-8 Angstrom Compact free electron laser}},
  author ={SACLA},
  year = {2012}
}

@misc{xfel,
  howpublished = {\url{http://www.xfel.eu}},
  title = {{European XFEL}},
  author = {XFEL},
  year = {2012}
}

@article{bearden1967x,
author = {Bearden, J A},
journal = {Reviews of Modern Physics},
number = {1},
pages = {78},
publisher = {APS},
title = {{X-ray wavelengths}},
volume = {39},
year = {1967}
}

@article{bearden1967reevaluation,
author = {Bearden, J A and Burr, A F},
journal = {Reviews of Modern Physics},
number = {1},
pages = {125},
publisher = {APS},
title = {{Reevaluation of X-ray atomic energy levels}},
volume = {39},
year = {1967}
}
@inproceedings{chubar1998accurate,
author = {Chubar, O and Elleaume, P},
booktitle = {Proc. of the EPAC98 Conference},
pages = {1177--1179},
title = {{Accurate and efficient computation of synchrotron radiation in the near field region}},
year = {1998}
}
@article{schaefers2008bessy,
author = {Sch\"{a}fers, F},
journal = {Modern Developments in X-Ray and Neutron Optics},
pages = {9--41},
publisher = {Springer},
title = {{The BESSY raytrace program RAY}},
year = {2008}
}
@article{zsigmond2002monte,
author = {Zsigmond, G and Lieutenant, K and Mezei, F},
journal = {Neutron News},
number = {4},
pages = {11--14},
publisher = {Taylor \& Francis},
title = {{Monte Carlo simulations of neutron scattering instruments by VITESS: virtual instrumentation tool for ESS}},
volume = {13},
year = {2002}
}
@article{wechsler2000vitess,
author = {Wechsler, D and Zsigmond, G and Streffer, F and Mezei, F},
journal = {Neutron News},
number = {4},
pages = {25--28},
publisher = {Taylor \& Francis},
title = {{VITESS: virtual instrumentation tool for pulsed and continuous sources}},
volume = {11},
year = {2000}
}
@inproceedings{seeger2004neutron,
author = {Seeger, P A and Daemen, L L},
booktitle = {Proc. SPIE},
pages = {109},
title = {{The neutron instrument simulation package, NISP}},
volume = {5536},
year = {2004}
}
@article{saroun1997restrax,
author = {Saroun, J and Kulda, J},
journal = {Physica B: Condensed Matter},
pages = {1102--1104},
publisher = {Elsevier},
title = {{RESTRAX--a program for TAS resolution calculation and scan profile simulation}},
volume = {234},
year = {1997}
}
@book{wall2000programming,
author = {Wall, L and Christiansen, T and Orwant, J},
publisher = {O'Reilly Media},
title = {{Programming Perl}},
year = {2000}
}
@inproceedings{catlett2002philosophy,
author = {Catlett, C},
booktitle = {Cluster Computing and the Grid, 2002. 2nd IEEE/ACM International Symposium on},
organization = {IEEE},
pages = {8},
title = {{The philosophy of TeraGrid: building an open, extensible, distributed TeraScale facility}},
year = {2002}
}
@book{kernighan1988c,
author = {Kernighan, B W and Ritchie, D M},
publisher = {Prentice Hall},
title = {The C Programming Language},
year = {1988},
isbn={0-13-110370-9},
}
@book{als2011elements,
author = {Als-Nielsen, J and McMorrow, D},
publisher = {Wiley},
title = {{Elements of modern X-ray physics}},
year = {2011}
}
@article{welnak1994shadow,
author = {Welnak, C and Chen, G J and Cerrina, F},
journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
number = {1-3},
pages = {344--347},
publisher = {Elsevier},
title = {{SHADOW: A synchrotron radiation and X-ray optics simulation tool}},
volume = {347},
year = {1994}
}
@article{sanchez2011shadow3,
author = {Sanchez del Rio, M and Canestrari, N and Jiang, F and Cerrina, F},
journal = {Journal of Synchrotron Radiation},
number = {5},
pages = {0},
publisher = {International Union of Crystallography},
title = {{SHADOW3: a new version of the synchrotron X-ray optics modelling package}},
volume = {18},
year = {2011}
}
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author = {Metropolis, N and Ulam, S},
journal = {Journal of the American statistical association},
number = {247},
pages = {335--341},
title = {{The monte carlo method}},
volume = {44},
year = {1949}
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author = {Chantler, C T},
journal = {Journal of Physical and Chemical Reference Data},
pages = {71},
title = {{Theoretical form factor, attenuation, and scattering tabulation for Z= 1--92 from E= 1--10 eV to E= 0.4--1.0 MeV}},
volume = {24},
year = {1995}
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@article{chantler2000detailed,
author = {Chantler, C T},
journal = {Journal of Physical and Chemical Reference Data},
number = {4},
pages = {597},
publisher = {[New York, etc.]: American Chemical Society, 1972-},
title = {{Detailed tabulation of atomic form factors, photoelectric absorption and scattering cross section, and mass attenuation coefficients in the vicinity of absorption edges in the soft x-ray (Z= 30-36, Z= 60-89, E= 0.1 keV-10 keV), addressing convergence issu}},
volume = {29},
year = {2000}
}
@article{kramers1923,
author = {Kramers, H. A.},
doi = {10.1080/14786442308565244},
issn = {1941-5982},
journal = {Philosophical Magazine Series 6},
month = nov,
number = {275},
pages = {836--871},
publisher = {Taylor \& Francis},
title = {{XCIII. On the theory of X-ray absorption and of the continuous X-ray spectrum}},
url = {http://dx.doi.org/10.1080/14786442308565244},
volume = {46},
year = {1923}
}
@article{nyquist1928certain,
author = {Nyquist, H},
journal = {American Institute of Electrical Engineers, Transactions of the},
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publisher = {IEEE},
title = {{Certain topics in telegraph transmission theory}},
volume = {47},
year = {1928}
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@inproceedings{chavanne2003vacuum,
  title={In-vacuum undulators at ESRF},
  author={Chavanne, J. and Penel, C. and Plan, B. and Revol, F.},
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  volume={1},
  pages={253--255},
  year={2003},
  organization={IEEE}
}
@article{snigirev1996,
author = {Snigirev, A and Kohn, V and Snigireva, I},
file = {:home/erkn/Documents/papers/xray/snigirev\_96.pdf:pdf},
journal = {Nature},
title = {{A compound refractive lens for focusing high-energy X-rays}},
url = {http://www.institut2b.physik.rwth-aachen.de/xray/references/nat96.pdf},
year = {1996}
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@article{vaughan2011x,
abstract = {This paper describes a tunable X-ray focusing apparatus, referred to as a transfocator, based on compound refractive lenses. By varying the number of lenses in the beam, the X-ray energy focused and the focal length can be varied continuously throughout a large range of energies and distances. The instrument can be used in both white and monochromatic beams to focus, pre-focus or collimate the beam. The transfocator can be used with other monochromators and/or other focusing elements, leading to significant increases in flux. Furthermore, the chromatic nature of the focusing means the transfocator suppresses harmonics and can also be used as an extremely high flux broad-band-pass monochromator. These devices have been installed in the first optics and second experimental hutches at the ID11 beamline at the ESRF.},
author = {Vaughan, Gavin B M and Wright, Jonathan P and Bytchkov, Aleksei and Rossat, Michel and Gleyzolle, Henri and Snigireva, Irina and Snigirev, Anatoly},
doi = {10.1107/S0909049510044365},
file = {:home/erkn/Documents/papers/xray/vaughan\_10\_JoSR.pdf:pdf},
issn = {1600-5775},
journal = {Journal of synchrotron radiation},
keywords = {compound refractive lens,microfocus,monochromator,x-ray optics},
month = mar,
number = {Pt 2},
pages = {125--33},
pmid = {21335897},
title = {{X-ray transfocators: focusing devices based on compound refractive lenses.}},
url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3267637\&tool=pmcentrez\&rendertype=abstract},
volume = {18},
year = {2011}
}

@article{james1980monte,
author = {James, F},
file = {:home/erkn/Documents/papers/mc/james\_80.pdf:pdf},
journal = {Reports on Progress in Physics},
title = {{Monte Carlo theory and practice}},
url = {http://iopscience.iop.org/0034-4885/43/9/002},
volume = {1145},
year = {1980}
}
@article{knudsen2011mcxtrace,
abstract = {We present the developments of the McXtrace project, a free, open source software package based on Monte Carlo ray tracing for simulations and optimisation of complete X-ray instruments. The methodology of building a simulation is presented through an example beamline, namely Beamline 811 at MAX-lab, Lund, Sweden - a beamline dedicated to materials science. © 2011 COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.},
annote = {Presented at: Advances in Computational Methods for X-Ray Optics
II : San Diego (US), 21 - 25 Aug, 2011},
author = {{Bergb\"{a}ck Knudsen}, Erik and Prodi, A and Willendrup, Peter Kj{\ae}r and Lefmann, Kim and Baltser, J and Gundlach, C and {Sanchez del Rio}, M and Ferrero, C and Feidenhans'l, Robert},
issn = {0277-786X},
journal = {Proceedings of SPIE, the International Society for Optical Engineering},
keywords = {Engineering,Materialekarakterisering og modellering,Materials characterization and modelling,McXtrace,Monte Carlo,Optics,Physics,X-ray simulations,ray tracing},
number = {1},
title = {{McXtrace: A modern ray-tracing package for X-ray instrumentation}},
volume = {8141},
year = {2011}
}

@article{lefmann2008virtual,
  title={Virtual experiments: the ultimate aim of neutron ray-tracing simulations},
  author={Lefmann, K. and Willendrup, PK and Udby, L. and Lebech, B. and Mortensen, K. and Birk, J. O. and Klen{\o}, K. and Knudsen, E. and Christiansen, P. and Saroun, J. and others},
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  year={2008},
  publisher={Taylor \& Francis}
}
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@misc{msvc,
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@misc{intelc,
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@misc{mcstas,
  howpublished={\url{http://www.mcstas.org}},
  title={McStas - A neutron ray-trace simulation package},
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}
@misc{mcxtrace,
  howpublished={\url{http://www.mcxtrace.org}},
  author={McXtrace},
  title={McXtrace - Monte Carlo Xray Tracing},
  year={2012}
}

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@book{roe2001probability,
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@book{mcxtrace-manual,
   howpublished={\url{http://download.mcxtrace.org/manual/mcxtrace-1.0-manual.pdf}},
   title={User and Programmer's Guide to the X-Ray-Tracing Package McXtrace, Version 1.0},
   author={Bergb\"{a}ck Knudsen, Erik and Prodi, Andrea and Willendrup, Peter Kj{\ae}r and Lefmann, Kim},
   year={2012}
}

@book{mcxtrace-comp-manual,
   howpublished={\url{http://download.mcxtrace.org/manual/mcxtrace-1.0-component-manual.pdf}},
   title={Component Manual for the X-ray-Tracing Package McXtrace, Version 1.0},
   author={Bergb\"{a}ck Knudsen, Erik and Prodi, Andrea and Willendrup, Peter Kj{\ae}r and Lefmann, Kim},
   year={2012}
}

@article{knudsen2013mcxtrace,
  title = {McXtrace},
  language = {English},
  publisher = {WILEY-BLACKWELL},
  author = {Bergbäck Knudsen, Erik and Prodi, Andrea and Baltser, Jana and Thomsen, Maria and Willendrup, Peter Kjær and Sanchez Del Rio, Manuel and Ferrero, Claudio and Farhi, Emmanuel and Haldrup, Martin Kristoffer and Vickery, Anette and Feidenhans'l, Robert and Mortensen, Kell and Nielsen, Martin Meedom and Poulsen, Henning Friis and Schmidt, Søren and Lefmann, Kim},
  journal = {Journal of Applied Crystallography},
  volume = {46},
  number = {3},
  pages = {679-696},
  year = {2013},
  issn = {00218898, 16005767},
  abstract = {This article presents the Monte Carlo simulation package McXtrace, intended for optimizing X-ray beam instrumentation and performing virtual X-ray experiments for data analysis. The system shares a structure and code base with the popular neutron simulation code McStas and is a good complement to the standard X-ray simulation software SHADOW. McXtrace is open source, licensed under the General Public License, and does not require the user to have access to any proprietary software for its operation. The structure of the software is described in detail, and various examples are given to showcase the versatility of the McXtrace procedure and outline a possible route to using Monte Carlo simulations in data analysis to gain new scientific insights. The studies performed span a range of X-ray experimental techniques: absorption tomography, powder diffraction, single-crystal diffraction and pump-and-probe experiments. Simulation studies are compared with experimental data and theoretical calculations. Furthermore,the simulation capabilities for computing coherent X-ray beam properties and a comparison with basic diffraction theory are presented. © 2013 International Union of Crystallography.},
  doi = {10.1107/S0021889813007991}
}

@inproceedings{baltser2011advanced,
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  booktitle={Proceedings of SPIE},
  volume={8141},
  pages={814111},
  year={2011}
}

@inproceedings{prodi2011monte,
  title={A Monte Carlo approach for simulating the propagation of partially coherent x-ray beams},
  author={Prodi, A. and Knudsen, E. and Willendrup, P. and Schmitt, S. and Ferrero, C. and Lefmann, K. and others},
  booktitle={Proceedings of SPIE},
  volume={8141},
  pages={814108},
  year={2011}
}
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@inproceedings{bahrdt2011phase,
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  booktitle={Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series},
  volume={8141},
  pages={153},
  year={2011}
}
@article{thomsen2013prediction,
  author={Thomsen, Maria et. al.},
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  year={2013}
}

@book{warren1990x,
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@article{grehk2001design,
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}
@article{carlson2006xafs,
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}
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@article{seeger2002monte,
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  publisher={Taylor \& Francis}
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@article{udby2011analysing,
  title={Analysing neutron scattering data using McStas virtual experiments},
  author={Udby, L. and Willendrup, P.K. and Knudsen, E. and Niedermayer, C. and Filges, U. and Christensen, N.B. and Farhi, E. and Wells, BO and Lefmann, K.},
  journal={Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
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  number={1},
  pages={S138--S143},
  year={2011},
  publisher={Elsevier}
}
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author = "Coll, M. and Solans, X. and Font-Altaba, M. and Subirana, J. A.",
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@article{farhi2009virtual,
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}
@article{farhi,
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simulation package",
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@misc{fermi,
  howpublished = {\url{http://www.hpc.cineca.it/content/fermi-7th-most-powerful-supercomputer-worldwide}},
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@article{lengeler2002parabolic,
  title={Parabolic refractive X-ray lenses},
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@article {debye1915scattering,
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@article{lefmann1999mcstas,
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@inproceedings{svensson1998automatic,
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@article{haldrup2012guest,
  title={Guest-Host Interactions Investigated by Time-Resolved X-ray Spectroscopies and Scattering at MHz Rates: Solvation Dynamics and Photoinduced Spin Transition in Aqueous Fe (bipy) 32+},
  author={Haldrup, Kristoffer and Vank{\'o}, Gy{\"o}rgy and Gawelda, Wojciech and Galler, Andreas and Doumy, Gilles and March, Anne Marie and Kanter, Elliot P and Bordage, Amelie and Dohn, Asmus and Van Driel, Tim Brandt and Kjaer, K. S. and Lemke, H. T. and Canton, S. E. and
   Uhlig, J. and Sundstrom, V. and Young, L. and Southworth, S. H. and Nielsen, M. M. and Bressler, C},
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  year={2012},
  publisher={ACS Publications}
}

@article{haldrup2010analysis,
  title={Analysis of time-resolved X-ray scattering data from solution-state systems},
  author={Haldrup, Kristoffer and Christensen, Morten and Meedom Nielsen, Martin},
  journal={Acta Crystallographica Section A: Foundations of Crystallography},
  volume={66},
  number={2},
  pages={261--269},
  year={2010},
  publisher={International Union of Crystallography}
}

Hvis man skal prale med, at tidsopløsningen med 100 ps pulser kan forbedres ned til ~10 ps niveau:
@article{haldrup2011bond,
Author = {Haldrup, Kristoffer and Harlang, Tobias and Christensen, Morten and
   Dohn, Asmus and van Driel, Tim Brandt and Kjaer, Kasper Skov and Harrit,
   Niels and Vibenholt, Johan and Guerin, Laurent and Wulff, Michael and
   Nielsen, Martin Meedom},
Title = {{Bond Shortening (1.4 angstrom) in the Singlet and Triplet Excited States
   of {[}Ir-2(dimen)(4)](2+) in Solution Determined by Time-Resolved X-ray
   Scattering}},
Journal = {{INORGANIC CHEMISTRY}},
Year = {{2011}},
Volume = {{50}},
Number = {{19}},
Pages = {{9329-9336}},
Month = {{OCT 3}},
DOI = {{10.1021/ic2006875}},
ISSN = {{0020-1669}},
ResearcherID-Numbers = {{van Driel, Tim/K-3013-2012
Nielsen, Martin/A-5133-2009}},
Times-Cited = {{3}},
Unique-ID = {{ISI:000295115000019}},
}

@article{vartanyants2010coherence,
  title={Coherence properties of hard x-ray synchrotron sources and x-ray free-electron lasers},
  author={Vartanyants, I A and Singer, A},
  journal={New Journal of Physics},
  volume={12},
  number={3},
  pages={035004},
  year={2010},
  publisher={IOP Publishing}
}

@article{chubar2011application,
  title={Application of partially coherent wavefront propagation calculations for design of coherence-preserving synchrotron radiation beamlines},
  author={Chubar, Oleg and Chu, Yong S and Kaznatcheev, Konstantine and Yan, Hanfei},
  journal={Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
  volume={649},
  number={1},
  pages={118--122},
  year={2011},
  publisher={Elsevier}
}

@article{willendrup2011using,
  title={Using McStas for modelling complex optics, using simple building bricks},
  author={Willendrup, Peter K and Udby, Linda and Knudsen, Erik and Farhi, Emmanuel and Lefmann, Kim},
  journal={Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
  volume={634},
  number={1},
  pages={S150--S155},
  year={2011},
  publisher={Elsevier}
}

@article{spectra,
author = "Tanaka, Takashi and Kitamura, Hideo",
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volume = "8",
number = "6",
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month = "Nov",
doi = {10.1107/S090904950101425X},
url = {http://dx.doi.org/10.1107/S090904950101425X},
}

@article{matsumoto1998mersenne,
  title={Mersenne twister: a 623-dimensionally equidistributed uniform pseudo-random number generator},
  author={Matsumoto, Makoto and Nishimura, Takuji},
  journal={ACM Transactions on Modeling and Computer Simulation (TOMACS)},
  volume={8},
  number={1},
  pages={3--30},
  year={1998},
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}

