/*
 * Copyright 2020 MiLaboratory, LLC
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package com.milaboratory.core.alignment;

public enum AlignmentElementType {
    Match('M'),
    Mismatch('m'),
    Insertion('I'),
    Deletion('D');

    public final char cigarLetter, cigarLetterUpper;

    AlignmentElementType(char cigarLetter) {
        this.cigarLetter = cigarLetter;
        this.cigarLetterUpper = Character.toUpperCase(cigarLetter);
    }
}
