Author: Andreas Tille <tille@debian.org>
Last-Update: Wed, 22 Nov 2017 15:41:42 +0100
Description: Fix spelling issues

--- a/progs/mincconcat/mincconcat.c
+++ b/progs/mincconcat/mincconcat.c
@@ -724,7 +724,7 @@ static void get_concat_dim_name(Concat_I
       }
       if (ndims < min_ndims) {
          (void) fprintf(stderr, 
-                        "Cannot concatentate along image dimensions.\n");
+                        "Cannot concatenate along image dimensions.\n");
          exit(EXIT_FAILURE);
       }
       (void) ncdiminq(input_mincid, dim[0], dimname, NULL);
@@ -1223,7 +1223,7 @@ static int sort_function(const void *val
               concat_info - pointer to structure containing concat info
 @OUTPUT     : (none)
 @RETURNS    : (nothing)
-@DESCRIPTION: Routine to create the output concatentated minc file.
+@DESCRIPTION: Routine to create the output concatenated minc file.
 @METHOD     : 
 @GLOBALS    : 
 @CALLS      : 
--- a/conversion/dcm2mnc/dcm2mnc.man1
+++ b/conversion/dcm2mnc/dcm2mnc.man1
@@ -185,7 +185,7 @@ study date and time as follows:
 patientname\_yyyymmdd\_hhmmss/
 
 The individual files are named according to the patient name, study date
-and time, series identifer, and modality information as follows:
+and time, series identifier, and modality information as follows:
 
 patientname\_yyyymmdd\_hhmmss\_series\_scan\_modality.mnc
 
--- a/progs/mincmorph/mincmorph.c
+++ b/progs/mincmorph/mincmorph.c
@@ -77,7 +77,7 @@ char    *succ_txt = "B";
 
 char     successive_help[] = "Successive operations (Maximum: 100) \
 \n\tB[floor:ceil:fg:bg] - binarise in the range, using foreground and background \
-\n\tK[floor:ceil:bg] - clamp betwen the specified range. Set other voxels to 'bg' (default: 0) \
+\n\tK[floor:ceil:bg] - clamp between the specified range. Set other voxels to 'bg' (default: 0) \
 \n\tP[bg] - pad volume with respect to the current kernel using 'bg' (default: 0)\
 \n\tE - erosion \
 \n\tD - dilation \
--- a/progs/mincstats/mincstats.c
+++ b/progs/mincstats/mincstats.c
@@ -373,7 +373,7 @@ static ArgvInfo argTable[] = {
    {"-kurtosis", ARGV_CONSTANT, (char *)TRUE, (char *)&Kurtosis,
     "sample kurtosis (4th moment)"},
 
-   {NULL, ARGV_HELP, (char *)NULL, (char *)NULL, "\nHistogram Dependant Statistics:"},
+   {NULL, ARGV_HELP, (char *)NULL, (char *)NULL, "\nHistogram Dependent Statistics:"},
    {"-hist_count", ARGV_CONSTANT, (char *)TRUE, (char *)&Hist_Count,
     "# of voxels portrayed in Histogram."},
    {"-hist_percent",
--- a/conversion/dicomserver_sonata/siemens_include/STC_Common_Status.h
+++ b/conversion/dicomserver_sonata/siemens_include/STC_Common_Status.h
@@ -15,7 +15,7 @@
  *			Status-, Configuration,- and Common Files' for the part	*
  *			of 'Status File'. 					*
  *										*
- *			The informations for 'General Installation' and 'Fixed	*
+ *			The information for 'General Installation' and 'Fixed	*
  *			Device Conditions' are found inhere.			*
  *										*
  *------------------------------------------------------------------------------*
@@ -627,7 +627,7 @@ union	__STC_BASIC_DATA
 
 /*------------------------------------------------------------------------------*
  *										*
- *	Modality sub-type. This field contains informations about		*
+ *	Modality sub-type. This field contains information about		*
  *	variants of the modality described in STC_Modality (e.g.		*
  *	STC_Modality == MR and STC_Modality_Sub == STC_Modality_Sub_P8). 	*
  *	This field can be used by both, CT and MR modalities.			*
--- a/conversion/ecattominc/ecattominc.man1
+++ b/conversion/ecattominc/ecattominc.man1
@@ -6,7 +6,7 @@ ecattominc \- convert an ecat format fil
 
 \fBecattominc [\-help]\fR
 .SH "DESCRIPTION"
-\fIecattominc\fR will convert an ecat data file (version 6.x or 7.x) to a minc file format Unless the \fB\-small_header\fR option is specified, \fBecattominc\fR will conserve the maximum informations from the ecat header and subheader fields which will be respectively stored as attributes of the ecat\-main and ecat\-subhdr minc variables. 
+\fIecattominc\fR will convert an ecat data file (version 6.x or 7.x) to a minc file format Unless the \fB\-small_header\fR option is specified, \fBecattominc\fR will conserve the maximum information from the ecat header and subheader fields which will be respectively stored as attributes of the ecat\-main and ecat\-subhdr minc variables. 
 By default the whole 3D or 4D volume is converted, however, \fBecattominc\fR allows for the selection of slice and frame ranges to be copied.
 The voxel values of the generated minc file are decay corrected, unless the \fBnodecay_correct\fR flag is specified. 
 Finally, blood data file can be inserted within the minc file with the \fB\-bloodfile\fR option.
--- a/conversion/minctoecat/minctoecat.c
+++ b/conversion/minctoecat/minctoecat.c
@@ -98,12 +98,12 @@ int main ( int argc, char **argv) {
   
   /* Argument option table */
   static ArgvInfo argTable[] = {
-    {"-ignore_patient_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_patient_info,"Ignore informations from the minc patient variable."},
-    {"-ignore_study_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_study_info,"Ignore informations from the minc study variable."},
-    {"-ignore_acquisition_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_acquisition_info,"Ignore informations from the minc acquisition variable."},
-    {"-ignore_ecat_acquisition_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_ecat_acquisition_info,"Ignore informations from the minc ecat_acquisition variable."},
-    {"-ignore_ecat_main", ARGV_CONSTANT, (char *) FALSE, (char *) &include_ecat_main_info,"Ignore informations from the minc ecat-main variable."},
-    {"-ignore_ecat_subheader_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_ecat_subheader_info,"Ignore informations from the minc ecat-subhdr variable."},
+    {"-ignore_patient_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_patient_info,"Ignore information from the minc patient variable."},
+    {"-ignore_study_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_study_info,"Ignore information from the minc study variable."},
+    {"-ignore_acquisition_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_acquisition_info,"Ignore information from the minc acquisition variable."},
+    {"-ignore_ecat_acquisition_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_ecat_acquisition_info,"Ignore information from the minc ecat_acquisition variable."},
+    {"-ignore_ecat_main", ARGV_CONSTANT, (char *) FALSE, (char *) &include_ecat_main_info,"Ignore information from the minc ecat-main variable."},
+    {"-ignore_ecat_subheader_variable", ARGV_CONSTANT, (char *) FALSE, (char *) &include_ecat_subheader_info,"Ignore information from the minc ecat-subhdr variable."},
     {"-no_decay_corr_fctr", ARGV_CONSTANT, (char *) FALSE, (char *) &do_decay_corr_factor,"Do not compute the decay correction factors"},
     {"-label", ARGV_CONSTANT, (char *) TRUE, (char *) &label_data,"Voxel values are treated as integers, scale and calibration factors are set to unity"},
     {NULL, ARGV_END, NULL, NULL, NULL} 
@@ -137,9 +137,9 @@ int main ( int argc, char **argv) {
    minc_file_name = argv[1];
    ecat_file_name = argv[2];
 
-  /*getting informations about the dimensions from the minc file*/
+  /*getting information about the dimensions from the minc file*/
   if((mi = get_minc_info(minc_file_name)) == NULL) {
-    fprintf(stderr, "Can not get informations from %s.\n", minc_file_name);
+    fprintf(stderr, "Can not get information from %s.\n", minc_file_name);
     return (1);
   }
 
@@ -151,15 +151,15 @@ int main ( int argc, char **argv) {
 
   
   /***************************************************************************************
-   *       filling the ecat header fields with the available informations                *
+   *       filling the ecat header fields with the available information                *
    ***************************************************************************************/
   /*MAIN HEADER: filling compulsory fields*/
   if((out_main_header = init_main_header(minc_file_name, mi)) == NULL) {
-    fprintf(stderr, "Can not initilize the ecat main header.\n");
+    fprintf(stderr, "Can not initialize the ecat main header.\n");
     return (1);
   }
-  /*additional informations if available and requested*/
-  /*getting patient informations from the MIpatient variable*/
+  /*additional information if available and requested*/
+  /*getting patient information from the MIpatient variable*/
   
   if(include_patient_info)
     get_patient_info(minc_file_name, out_main_header);
@@ -172,7 +172,7 @@ int main ( int argc, char **argv) {
   /*getting acquisition information from the ecat_acquisition variable*/
   if(include_ecat_acquisition_info)
     get_ecat_acquisition_info(minc_file_name, out_main_header);
-  /*getting ecat main header informations from the ecat-main variable*/
+  /*getting ecat main header information from the ecat-main variable*/
   if(include_ecat_main_info)
     get_ecat_main_header_info(minc_file_name, out_main_header);
 
@@ -181,7 +181,7 @@ int main ( int argc, char **argv) {
     fprintf(stderr, "Can not initialize the ecat image subheader.\n");
     return (1);
   }
- /*getting additionnal informations from the ecat-subhdr variable*/
+ /*getting additionnal information from the ecat-subhdr variable*/
  if(include_ecat_subheader_info)
    get_ecat_subheader_info(minc_file_name, out_image_subheader);
   
--- a/progs/minccmp/minccmp.man1
+++ b/progs/minccmp/minccmp.man1
@@ -21,7 +21,7 @@ minccmp - compare one or more minc file
 \fIminccmp\fR
 will calculate simple statistical measures between two minc
 files or more by comparing all subsequent files to the first. 
-The results for each subseqent file are then returned in order.
+The results for each subsequent file are then returned in order.
 By default all statistics are calculated. If specifitc statistics
 are requested via a command-line option, then only the requested 
 statistics are printed.
--- a/progs/mincdump/mincdump.man1
+++ b/progs/mincdump/mincdump.man1
@@ -110,7 +110,7 @@ this name from the last component of the
 by stripping off any extension it has.  Use the \fB-n\fP option to specify a
 different name.  Although the output file name used by \fBncgen -b\fP can be
 specified, it may be wise to have \fImincdump\fP change the default name to
-avoid inadvertantly overwriting a valuable netCDF file when using
+avoid inadvertently overwriting a valuable netCDF file when using
 \fBmincdump\fP, editing the resulting CDL file, and using \fBncgen -b\fP to
 generate a new netCDF file from the edited CDL file.
 .IP "\fB-p\fP \fIfloat_digits[,double_digits]\fP"
--- a/progs/mincsample/mincsample.man1
+++ b/progs/mincsample/mincsample.man1
@@ -43,7 +43,7 @@ by a random sampling of a sub-set of poi
 Print extra information during processing.
 .TP
 \fB\-quiet\fR
-Print only the ouput sampling data.
+Print only the output sampling data.
 .TP
 \fB\-clobber\fR
 Overwrite existing output files (when used with -outfile)
--- a/progs/minctoraw/minctoraw.man1
+++ b/progs/minctoraw/minctoraw.man1
@@ -13,7 +13,7 @@ minctoraw \- copy data from a MINC file.
 \fIminctoraw\fR dumps a chunk of MINC file data to standard output in the
 format of your choice.
 .P
-This program is largely superceded by \fImincextract\fR.
+This program is largely superseded by \fImincextract\fR.
 
 .SH OPTIONS
 .TP
--- a/progs/xfm/xfm2def.man1
+++ b/progs/xfm/xfm2def.man1
@@ -9,8 +9,8 @@ xfm2def \- convert a MNI transform file
 \fIxfm2def\fR takes an input transform \fIinput.xfm\fR that can consist of a
 series of concatenated transforms in a single xfm file and converts this into a
 single deformation volume that is output as \fIdef_vol.mnc\fR. Note that the
-output is not a tranform file itself, you can then make use of this volume in a
-MINC tranform by creating an .xfm file as such:
+output is not a transform file itself, you can then make use of this volume in a
+MINC transform by creating an .xfm file as such:
 
    MNI Transform File
    
--- a/progs/xfm/xfmflip.man1
+++ b/progs/xfm/xfmflip.man1
@@ -24,7 +24,7 @@ Print out extra progress information whi
 Overwrite any existing output file
 .TP
 \fB\-fake\fR
-Dont actually run the commands, just echo them to STDOUT
+Don't actually run the commands, just echo them to STDOUT
 
 .SH AUTHOR
 Andrew Janke
