Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Contact: toolbox@ncbi.nlm.nih.gov
Upstream-Name: ncbi
Source: http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/
Files-Excluded: ncbi/data/UniVec.*

Files: *
Copyright: 1996-2017 NCBI
License: public_domain

Files: algo/blast/core/boost_erf.c
Copyright: 2006 John Maddock
License: BSL-1.0

Files: connect/mitsock/*
Copyright: 1998-1999 The Massachusetts Institute of Technology
License: MIT

Files: connect/mitsock/OTErrno.c connect/mitsock/OTnetdb.c
 connect/mitsock/sock_ext.h
Copyright: ???? National Center for Supercomputing Applications
License: NCSA

Files: connect/mitsock/a_inet.h
Copyright: 1983 Regents of the University of California
License: BSD-3-Clause

Files: connect/mitsock/carbon_netdb.h
Copyright: 1980, 1983, 1988 Regents of the University of California
License: BSD-3-Clause

Files: connect/mitsock/neterrno.h
Copyright: 1982, 1986, 1989 Regents of the University of California
License: BSD-3-Clause

Files: connect/mitsock/neti_in.h
Copyright: 1982, 1986, 1990 Regents of the University of California
License: BSD-3-Clause

Files: connect/mitsock/s_types.h
Copyright: 1982 Regents of the University of California
License: BSD-3-Clause

Files: connect/parson.?
Copyright: 2012-2016 Krzysztof Gabis
License: Expat

Files: corelib/regex.c
Copyright: 1993 Free Software Foundation, Inc.
License: GPL-2+

Files: corelib/regex.h
Copyright: 1985, 1989, 1990, 1991, 1992, 1993 Free Software Foundation, Inc.
License: GPL-2+

Files: debian/*
Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr>
           2001      Dr. Guenter Bechly <gbechly@debian.org>
           2001-2019 Aaron M. Ucko <ucko@debian.org>
           2012-2019 Andreas Tille <tille@debian.org
           2019      Steffen Möller <moeller@debian.org>
License: public_domain

Files: debian/tests/test-data/*
Copyright: 1996-2018 NCBI
License: public_domain
Comment:
 nc0225.aso.gz and dsRNA_viruses.* can be downloaded by running:
    wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz
    wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz
    wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Viruses/dsRNA_viruses.gene_info.gz
 .
 spidey_* can be downloaded using their accession numbers with help of idfetch, e.g.:
    idfetch -dn -t 5 -c 1 -g 1327850419 -o spidey_mRNA.fasta
    idfetch -dn -t 5 -c 1 -g 568802167 -o spidey_genome.fasta
 .
 Based on the example provided in /usr/share/doc/ncbi-tools-bin/tbl2asn.txt.gz,
 Sc_16.sbt was generated using NCBI Submission Portal:
    https://submit.ncbi.nlm.nih.gov/genbank/template/submission/
 .
 The examples for Sc_16.fsa and Sc_16.tbl were taken from here:
    https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/

Files: debian/tests/test-data/trnascan-se_sample.output
Copyright: 2018 Liubov Chuprikova <chuprikovalv@gmail.com>
License: public_domain
Comment:
 The file was generated by tRNAscan-SE 2.0:
    tRNAscan-SE -d -y -o trnascan-se_sample.output /usr/share/doc/trnascan-se/examples/Example1.fa

License: public_domain
 The NCBI toolkit has been put into the public domain, completely unfettered:
 .
                           PUBLIC DOMAIN NOTICE
              National Center for Biotechnology Information
 .
 This software/database is a "United States Government Work" under the
 terms of the United States Copyright Act.  It was written as part of
 the author's official duties as a United States Government employee and
 thus cannot be copyrighted.  This software/database is freely available
 to the public for use. The National Library of Medicine and the U.S.
 Government have not placed any restriction on its use or reproduction.
 .
 Although all reasonable efforts have been taken to ensure the accuracy
 and reliability of the software and data, the NLM and the U.S.
 Government do not and cannot warrant the performance or results that
 may be obtained by using this software or data. The NLM and the U.S.
 Government disclaim all warranties, express or implied, including
 warranties of performance, merchantability or fitness for any particular
 purpose.
 .
 Please cite the author in any work or product based on this material.

License: BSL-1.0
 Permission is hereby granted, free of charge, to any person or organization
 obtaining a copy of the software and accompanying documentation covered by
 this license (the "Software") to use, reproduce, display, distribute,
 execute, and transmit the Software, and to prepare derivative works of the
 Software, and to permit third-parties to whom the Software is furnished to
 do so, all subject to the following:
 .
 The copyright notices in the Software and this entire statement, including
 the above license grant, this restriction and the following disclaimer,
 must be included in all copies of the Software, in whole or in part, and
 all derivative works of the Software, unless such copies or derivative
 works are solely in the form of machine-executable object code generated by
 a source language processor.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
 SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
 FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
 ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 DEALINGS IN THE SOFTWARE.

License: Expat
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to
 deal in the Software without restriction, including without limitation the
 rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
 sell copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
 IN THE SOFTWARE.

License: MIT
 Permission to use, copy, modify, and distribute this software and its
 documentation for any purpose and without fee is hereby granted,
 provided that the above copyright notice appear in all copies and that
 both that copyright notice and this permission notice appear in
 supporting documentation, and that the name of M.I.T. not be used in
 advertising or publicity pertaining to distribution of the software
 without specific, written prior permission.  Furthermore if you modify
 this software you must label your software as modified software and not
 distribute it in such a fashion that it might be confused with the
 original MIT software. M.I.T. makes no representations about the
 suitability of this software for any purpose.  It is provided "as is"
 without express or implied warranty.
 .
 THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR IMPLIED
 WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
 MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
 .
 Individual source code files are copyright MIT, Cygnus Support,
 OpenVision, Oracle, Sun Soft, FundsXpress, and others.
 .
 Project Athena, Athena, Athena MUSE, Discuss, Hesiod, Kerberos, Moira,
 and Zephyr are trademarks of the Massachusetts Institute of Technology
 (MIT).  No commercial use of these trademarks may be made without prior
 written permission of MIT.
 .
 "Commercial use" means use of a name in a product or other for-profit
 manner.  It does NOT prevent a commercial firm from referring to the MIT
 trademarks in order to convey information (although in doing so,
 recognition of their trademark status should be given).

License: NCSA
 This source file is placed in the public domian.
 Any resemblance to NCSA Telnet, living or dead, is purely coincidental.
 .
      National Center for Supercomputing Applications
      152 Computing Applications Building
      605 E. Springfield Ave.
      Champaign, IL  61820

License: BSD-3-Clause
 Redistribution and use in source and binary forms are permitted
 provided that: (1) source distributions retain this entire copyright
 notice and comment, and (2) distributions including binaries display
 the following acknowledgement:  ``This product includes software
 developed by the University of California, Berkeley and its contributors''
 in the documentation or other materials provided with the distribution
 and in all advertising materials mentioning features or use of this
 software. Neither the name of the University nor the names of its
 contributors may be used to endorse or promote products derived
 from this software without specific prior written permission.
 THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR
 IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

License: GPL-2+
 This program is free software; you can redistribute it
 and/or modify it under the terms of the GNU General Public
 License as published by the Free Software Foundation; either
 version 2 of the License, or (at your option) any later
 version.
 .
 This program is distributed in the hope that it will be
 useful, but WITHOUT ANY WARRANTY; without even the implied
 warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
 PURPOSE.  See the GNU General Public License for more
 details.
 .
 You should have received a copy of the GNU General Public
 License along with this package; if not, write to the Free
 Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 Boston, MA  02110-1301 USA
 .
 On Debian systems, the full text of the GNU General Public
 License version 2 can be found in the file
 `/usr/share/common-licenses/GPL-2'.
