openms (2.6.0+cleaned1-6) unstable; urgency=medium

  * Team upload.

  [ Adrian Bunk ]
  * Remove incorrect build dependency on architecture-is-64-bit.
    Build depend on libqt5opengl5-desktop-dev instead. Closes: #1123675.

  [ Santiago Vila ]
  * d/control: Drop "Priority: optional" (default).
  * d/control: Update standards-version.
  * d/salsa-ci.yml: Use the simplified version.

 -- Santiago Vila <sanvila@debian.org>  Sat, 03 Jan 2026 19:55:00 +0100

openms (2.6.0+cleaned1-5) unstable; urgency=medium

  * Team upload.

  [ Adrian Bunk ]
  * Fix FTBFS with CMake 4. (Closes: #1113360)

  [ Andreas Tille ]
  * Build-Depends: architecture-is-64-bit
    Closes: #1068052
  * d/watch:
     - version=5
     - Fix upstream source
  * Standards-Version: 4.7.2 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Remove trailing whitespace in debian/rules (routine-update)
  * Trim trailing whitespace.
  * Use secure URI in Homepage field.
  * Update renamed lintian tag names in lintian overrides.

 -- Andreas Tille <tille@debian.org>  Fri, 19 Dec 2025 09:36:55 +0100

openms (2.6.0+cleaned1-4) unstable; urgency=medium

  * Team upload.
  * Add missing include of Boost-headers.
  * Do not use versioned boost dev dependencies.

 -- Anton Gladky <gladk@debian.org>  Sat, 23 Dec 2023 15:20:41 +0100

openms (2.6.0+cleaned1-3) unstable; urgency=medium

  * Team upload.
  * Include code copy of header files of seqan-dev (limited to those header
    files that are needed to build the package)
    Closes: #982567
  * Document code copy of seqan in debian/README.source
  * Add debian/salsa-ci.yml

 -- Andreas Tille <tille@debian.org>  Tue, 02 Mar 2021 08:20:17 +0100

openms (2.6.0+cleaned1-2) unstable; urgency=low

  * Implement the patch by Logan Rosen <logan@ubuntu.com> to fix the GLPK
    version check that doesn't account for major version, fixing FTBFS against
    GLPK 5. Thanks, Logan! Closes: #978194. Patch suggested upstream.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 04 Jan 2021 20:12:34 +0100

openms (2.6.0+cleaned1-1) unstable; urgency=low

  * New upstream version.

  * d/copyright: whole project revision, many files added.

  * Fix bug (Closes: #975588), required specifying libboost packages with
    version:  libboost1.74-dev, libboost-iostreams1.74-dev,
    libboost-date-time1.74-dev, libboost-math1.74-dev.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 15 Dec 2020 14:29:00 +0100

openms (2.5.0+cleaned1-5) unstable; urgency=low

  * Fix the bug on mipsel (Closes: #964315). Thanks to Adrian Bunk
    <bunk@debian.org> for the fix.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 08 Jul 2020 00:39:47 +0200

openms (2.5.0+cleaned1-4) unstable; urgency=low

  * Fix the stable->sid upgrade problem (Breaks+Replaces bug ; Closes:#962832 ;
    thanks to Andreas Beckmann <anbe@debian.org>) for reporting the
    piuparts-detected failure.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 15 Jun 2020 09:57:32 +0200

openms (2.5.0+cleaned1-3) unstable; urgency=low

  * Cleanup the Replaces/Conflics field to simplify to last
    reasonable version: libopenms2.4.0-real-1.

  * Since we replace the old version, lets close the bug that was
    kindly reported by Paolo Greppi <paolo.greppi@libpf.com> (Closes:
    #943450).

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 12 Jun 2020 14:59:53 +0200

openms (2.5.0+cleaned1-2) unstable; urgency=low

  * Fix location of the header files.

  * Some other improvements to the packaging.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 02 Jun 2020 15:28:50 +0200

openms (2.5.0+cleaned1-1) unstable; urgency=low

  * New upstream version.

 -- Filippo Rusconi <lopippo@debian.org>  Tue, 12 May 2020 14:31:14 +0200

openms (2.4.0-real-2) UNRELEASED; urgency=low

  * debian/binaries-extract-one-line-man-desc.sh: Fix a non-reproducible build failure.
  * debian/control: Standards-Version: 4.3.0

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 08 Mar 2019 10:23:37 +0100

openms (2.4.0-real-1) unstable; urgency=low

  * Really released 2.4.0 version with Qt5 port merged;

  * d/control: update website url to http://www.openms.de (thanks to Adrian Bunk
    <bunk@debian.org>; Closes: #906561);

  * d/copyright: update website url and copyright years.
    add Design Science License (Thanks to Dmitry Smirnov
    <onlyjob@debian.org>, Closes: #822412);

  * d/control: fix libqt5opengl5-dev (>= 5.7.0) to libqt5opengl5-desktop-dev
    (>= 5.7.0) because upstream won't support OpenGL ES anytime soon (thanks
    to Adrian Bunk <bunk@debian.org>, Closes: #906666);

  * Use secure copyright file specification URI.
  * Trim trailing whitespace.
    Jelmer Vernooĳ <jelmer@debian.org>  Mon, 15 Oct 2018 06:59:37 +0000

  * debian/control: Change "Conflicts:" to "Breaks:" (Closes:
    #816562);

 -- Filippo Rusconi <lopippo@debian.org>  Sat, 17 Nov 2018 17:24:48 +0100

openms (2.4.0-1) unstable; urgency=low

  * New upstream version (release branch with Qt5 port merged).

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 16 Aug 2018 13:45:17 +0200

openms (2.3-20180419-git-a0b7f650-1) experimental; urgency=low

  * New upstream version (development branch with Qt5 port merged).

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 19 Apr 2018 11:02:39 +0200

openms (20170907-1) UNRELEASED; urgency=medium

  * New upstream version ported to Qt5.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 06 Sep 2017 10:47:49 +0200

openms (2.0.0-4) unstable; urgency=medium

  * debian/control: Change "Conflicts:" to "Breaks:" (Closes:
    #816562);

  * debian/rules: fix the OPENMS_DATA_PATH value so that it points to
    /us/share/openms-common and not /usr/share/openms-common/OpenMS.

  * debian/rules: Put dh_clean at the end of the clean target.

  * switched doc_minimal doc_class_only targets around in the make call
    because the doxygen-based documentation for the classes did not get
    generated fully.

  * Remove the git protocol URL for the repos and switch to secure http for
    the other URL.

  * debian/control: Standards-Version: 3.9.7. No changes required.

  * debian/rules: Reinstate DEB_BUILD_MAINT_OPTIONS along with the hardening
    flag +all..

  * debian/rules: Make sure libSuperHirn and libOpenMS_GUI libraries are
    processed fine with respect to the symbols control file.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 30 Mar 2016 12:06:31 +0200

openms (2.0.0-3) unstable; urgency=medium

  * Ship the dynamically generated cmake files to the -dev package.

  * Improve the build system patch to state that we prefer libboost shared
    objects.

  * debian/rules: Packaging (debian/*.install files) now uses the material
    that has been installed with make install DESTDIR=debian/build after
    cmake call with -DCMAKE_INSTALL_PREFIX=/usr.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 18 Jan 2016 21:35:18 +0100

openms (2.0.0-2) unstable; urgency=medium

  * Ship the code examples to the openms-doc package. These examples are
    partially described in the documentation (html format) but having the
    whole code files is more interesting.

  * d/control: add "Replaces: libopenms-1.11" to fix upgrade problem
    (Closes: #810356), thanks to Andreas Beckmann <anbe@debian.org> for
    the report.

  * Bump-up debian/compat to 9.

  * debian/watch: use sf redirector.

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 14 Jan 2016 12:36:43 +0100

openms (2.0.0-1) unstable; urgency=medium

  * New upstream version (Closes: #790624 ; Closes: #804496).

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 17 Aug 2015 17:17:37 +0200

openms (1.11.1-5) unstable; urgency=medium

  * mv upstream upstream/metadata

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 18 Aug 2014 11:48:52 +0200

openms (1.11.1-4) unstable; urgency=low

  * Apply a patch suggested by Stephan Aiche <Stephan.Aiche@fu-berlin.de>
    to fix the failure when buiding the manuals using the LaTeX code
    created by Doxygen.

  * Create debian/missing-sources/jquery-1.7.1.js with the source file
    from http://code.jquery.com/jquery-1.7.1.js (lintian warning).

  * Add #DEBHELPER# to postinst (lintian warning).

  * Fix syntax error in the copyright file (lintian warning).

  * Remove ${shlibs:Depends} from Depends: of -common and -doc.

  * debian/copyright: fix syntax of the copyright field of the Files: *
    section.

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 30 Jun 2014 09:46:50 +0200

openms (1.11.1-3) unstable; urgency=low

  * remove version number from libbost development package names;
  * ensure that AUTHORS is correctly shipped in all packages.

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 20 Dec 2013 11:30:16 +0100

openms (1.11.1-2) unstable; urgency=low

  * New upstream release.

  * debian/control: canonicalize the Vcs-Git and Vcs-Browser fields;

  * debian/control: remove the Conflicts declaration for -dev, which is not
    required at all;

  * add *.desktop files to reference OpenMS in the non-Debian menus
    (thanks to Olivier Langella). Note that preexisting topp.menu shows
    the menus in the Debian menu if menu-xdg is installed. Sent enquiry
    about having these two files included in upstream.

  * Standards-Version: 3.9.4;

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 19 Dec 2013 09:41:22 +0100

openms (1.11.0-1) UNRELEASED; urgency=low

  * New upstream release.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 10 Jul 2013 22:54:41 +0200

openms (1.10.0-1) UNRELEASED; urgency=low

  * New upstream release.

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 10 Jul 2013 22:54:41 +0200

openms (1.9.0-4) unstable; urgency=low

  * debian/rules: reinstate the .NOTPARALLEL: directive to preclude
    parallelization of the build, as the errors are too complicated to
    follow in the build log. Also inhibit the
    parallel=%,$(DEB_BUILD_OPTIONS) and NUMJOBS options processing, as
    suggested by Aaron M. Ucko" <ucko@debian.org> (Closes: #702606).

 -- Filippo Rusconi <lopippo@debian.org>  Fri, 29 Mar 2013 13:05:15 +0100

openms (1.9.0-3) unstable; urgency=low

  * debian/rules: fix problem with DEB_BUILD_GNU_TYPE not holding proper
    values on some platforms, like i386, by adding
    DEB_HOST_MULTIARCH. Thanks to "Aaron M. Ucko" <ucko@debian.org>
    (Closes: #702512);
  * Fix the watch file, thanks to Nick Black <nick.black@sprezzatech.com>
    (Closes: #702518);

  * New code in patch ensures that there is no creation of symlinks by
    CMake after building of the libraries, since the symlinks are created
    anyways in debian/.

 -- Filippo Rusconi <lopippo@debian.org>  Thu, 07 Mar 2013 18:38:56 +0100

openms (1.9.0-2) unstable; urgency=low

  * Transition from experimental to unstable. Tests were positive.

  * Fix non-inclusion of generated config include files in the
    /usr/include/OpenMS directory

 -- Filippo Rusconi <lopippo@debian.org>  Wed, 06 Mar 2013 14:11:11 +0100

openms (1.9.0-1) experimental; urgency=low

  * 1.9.0 First Debian package release (Closes: #691129).

 -- Filippo Rusconi <lopippo@debian.org>  Mon, 12 Nov 2012 15:58:12 +0100
