Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: openms
Upstream-Contact: Oliver Kohlbacher <oliver.kohlbacher@uni-tuebingen.de>
Source:  http://www.openms.de
Comment: Cleaned the source tree:
 MS Windows-related stuff
 .git .github .gitmodules .gitpod.yml .gitpod.Dockerfile
 .travis.yml contrib THIRDPARTY
 doc/html/*


Files: *
Copyright: 2002-2020 The OpenMS Team -- Eberhard Karls University Tuebingen
           20002-2020 The OpenMS Team -- ETH Zurich
           20002-2020 The OpenMS Team -- Freie Universitaet Berlin
License: BSD-3-clause


Files: cmake/modules/CodeCoverage.cmake
Copyright: 2012 - 2015, Lars Bilke
License: BSD-3-clause


Files: cmake/modules/CppcheckTargets.cmake
 cmake/modules/Findcppcheck.cmake
 cmake/modules/GetGitRevisionDescription.cmake
 cmake/modules/GetGitRevisionDescription.cmake.in
Copyright: Iowa State University 2009-2010
License: Boost-1.0


Files: cmake/modules/FindBZip2.cmake
Copyright: 2006-2012 Kitware, Inc.
 2006 Alexander Neundorf <neundorf@kde.org>
 2012 Rolf Eike Beer <eike@sf-mail.de>
License: BSD-3-clause


Files: cmake/modules/FindEigen3.cmake
Copyright: 2006, 2007 Montel Laurent, <montel@kde.org>
 2008, 2009 Gael Guennebaud, <g.gael@free.fr>
 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
License: BSD-2-clause


Files: cmake/modules/FindGLPK.cmake
Copyright: 2003-2012 Egerváry Jenő Kombinatorikus Optimalizálási Kutatócsoport
 (Egerváry Research Group on Combinatorial Optimization, EGRES).
License: Boost-1.0


Files: cmake/modules/FindSQLITE.cmake
Copyright: 2015-2017 Main Street Softworks, Inc.
License: MIT-Expat


Files: cmake/modules/FindZLIB.cmake
Copyright:2000-2009 Kitware, Inc., Insight Software Consortium
License: BSD-3-clause


Files: cmake/modules/SelectLibraryConfigurations.cmake
Copyright: 2005-2009 Kitware, Inc.
 2009 Will Dicharry <wdicharry@stellarscience.com>
License: BSD-3-clause


Files: cmake/modules/cotire.cmake
Copyright: 2012-2017 Sascha Kratky
License: MIT-Expat


Files: share/OpenMS/SCHEMAS/mzIdentML1.0.0.xsd
 share/OpenMS/SCHEMAS/mzIdentML1.1.0.xsd
 share/OpenMS/SCHEMAS/mzQCML_0_0_5.xsd
 share/OpenMS/SCHEMAS/mzQuantML_1_0_0-rc2.xsd
 share/OpenMS/SCHEMAS/qcML_0.0.7.xsd
Copyright: 2009-2017 Proteomics Standards Initiative
License: Creative-Commons-by-2.0


Files: src/openms/include/OpenMS/MATH/MISC/MSNumpress.h
 src/openms/source/MATH/MISC/MSNumpress.cpp
Copyright: johan.teleman@immun.lth.se
License: BSD-3-clause


Files: src/openms/thirdparty/IsoSpec/*
Copyright: 2015-2020 Mateusz Łącki and Michał Startek
License: BSD-2-clause


Files: src/openms/thirdparty/IsoSpec/IsoSpec/isoMath.cpp
Copyright: John D. Cook
License: Public-domain
 This file has been released into public domain by John D. Cook and is
 used here with some slight modifications (which are hereby also
 released into public domain).


Files: src/openms/thirdparty/IsoSpec/IsoSpec/btrd.h
Copyright: 2020 Steven Watanabe
License: Boost-1.0


Files: src/openms/thirdparty/IsoSpec/IsoSpec/mman.cpp
 src/openms/thirdparty/IsoSpec/IsoSpec/mman.h
Copyright: https://github.com/alitrack/mman-win32
License: MIT-Expat


Files: src/openms/thirdparty/eol-bspline/BSpline/*
Copyright: 1998-2009 University Corporation for Atmospheric Research
License: BSD-2-clause


Files: src/openms/thirdparty/evergreen/*
Copyright: 2017 Oliver Serang
License: MIT-Expat


Files: src/openms/thirdparty/evergreen/src/CMakeLists.txt
Copyright: 2002-2020 The OpenMS Team -- Eberhard Karls University Tuebingen
           20002-2020 The OpenMS Team -- ETH Zurich
           20002-2020 The OpenMS Team -- Freie Universitaet Berlin
License: BSD-3-clause


Files: src/openms/thirdparty/json/*
Copyright: 2013-2018 Niels Lohmann
License: MIT-Expat


Files: src/openms/thirdparty/CMakeLists.txt
 src/openms/thirdparty/json/CMakeLists.txt
Copyright: 2002-2020 The OpenMS Team -- Eberhard Karls University Tuebingen
           20002-2020 The OpenMS Team -- ETH Zurich
           20002-2020 The OpenMS Team -- Freie Universitaet Berlin
License: BSD-3-clause


Files: src/openswathalgo/thirdparty/MIToolbox/*
Copyright: 2010-2017, Adam Pocock, The University of Manchester
License: BSD-3-clause


Files: src/openswathalgo/thirdparty/MIToolbox/CMakeLists.txt
Copyright: 2002-2020 The OpenMS Team -- Eberhard Karls University Tuebingen
           20002-2020 The OpenMS Team -- ETH Zurich
           20002-2020 The OpenMS Team -- Freie Universitaet Berlin
License: BSD-3-clause


Files: src/pyOpenMS/*
Copyright: 2011-2017 -- Uwe Schmitt
License: BSD-3-clause


Files: src/pyOpenMS/doCythonCompileOnly.py
Copyright: 2002-2020 The OpenMS Team -- Eberhard Karls University Tuebingen
           20002-2020 The OpenMS Team -- ETH Zurich
           20002-2020 The OpenMS Team -- Freie Universitaet Berlin
License: BSD-3-clause


Files: src/tests/coding/cpplint.py
Copyright: 2009 Google Inc
License: BSD-3-clause


Files: share/OpenMS/CHEMISTRY/unimod.xml
Copyright: 2002-2006 Unimod
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Files: debian/*
Copyright: 2012-2015 Filippo Rusconi (lopippo@debian.org)
License: GPL-3+
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Files: debian/seqan/*
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    applicable law, it shall not affect the validity or enforceability of the
    remainder of the terms of this License, and without further action by the
    parties to this agreement, such provision shall be reformed to the minimum
    extent necessary to make such provision valid and enforceable.
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    No term or provision of this License shall be deemed waived and no breach
    consented to unless such waiver or consent shall be in writing and signed by
    the party to be charged with such waiver or consent.
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    This License constitutes the entire agreement between the parties with
    respect to the Work licensed here. There are no understandings, agreements
    or representations with respect to the Work not specified here. Licensor
    shall not be bound by any additional provisions that may appear in any
    communication from You. This License may not be modified without the mutual
    written agreement of the Licensor and You.

