Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pbcopper
Source: https://github.com/PacificBiosciences/pbcopper
Files-Excluded: tools/Darwin
                tools/Linux
                tools/win32
                src/third-party/simde

Files: *
Copyright: 2016, Pacific Biosciences of California, Inc.
License: BSD-3-Clause

Files: third-party/json.hpp
Copyright: 2013-2022 Niels Lohmann <http://nlohmann.me>
License: MIT

Files: include/pbcopper/third-party/robin_hood/*
Copyright: 2018-2019 Martin Ankerl <http://martin.ankerl.com>
License: MIT

Files: include/pbcopper/third-party/kxsort/*
Copyright: 2016 Dinghua Li <voutcn@gmail.com>
License: MIT

Files: include/pbcopper/third-party/edlib.h
Copyright: 2014-2018 Martin Šošić
License: MIT

Files: include/pbcopper/third-party/htslib/*
       src/third-party/htslib/*
Copyright: 2010, 2013-2014 Genome Research Ltd.
           2011 Attractive Chaos <attractor@live.co.uk>
License: MIT

Files: include/pbcopper/third-party/rigtorp/*
Copyright: 2020 Erik Rigtorp <erik@rigtorp.se>
License: MIT

Files: include/pbcopper/third-party/sparc/*
Copyright: 2018 Chengxi Ye
License: MIT

Files: src/align/cssw/*
Copyright: 2010-2015 Boston College, Mengyao Zhao
License: MIT

Files: third-party/simde/debug-trap.h
       third-party/simde/simde-detect-clang.h
       third-party/simde/check.h
       third-party/simde/simde-align.h
       third-party/simde/hedley.h
       third-party/simde/simde-arch.h
Copyright:  Evan Nemerson <evan@nemerson.com>
License: CC0-1.0
 To the extent possible under law, the authors have waived all
 copyright and related or neighboring rights to this code.  For
 details, see the Creative Commons Zero 1.0 Universal license at
 https://creativecommons.org/publicdomain/zero/1.0/

Files: third-party/simde/arm/neon/addl.h
       third-party/simde/arm/neon/addl_high.h
       third-party/simde/arm/neon/addw.h
       third-party/simde/arm/neon/bsl.h
       third-party/simde/arm/neon/cagt.h
       third-party/simde/arm/neon/ceqz.h
       third-party/simde/arm/neon/combine.h
       third-party/simde/arm/neon/cvt.h
       third-party/simde/arm/neon/dot.h
       third-party/simde/arm/neon/dot_lane.h
       third-party/simde/arm/neon/dup_n.h
       third-party/simde/arm/neon/ext.h
       third-party/simde/arm/neon/get_high.h
       third-party/simde/arm/neon/get_lane.h
       third-party/simde/arm/neon/get_low.h
       third-party/simde/arm/neon/ld3.h
       third-party/simde/arm/neon/ld4.h
       third-party/simde/arm/neon/max.h
       third-party/simde/arm/neon/mla.h
       third-party/simde/arm/neon/mlal.h
       third-party/simde/arm/neon/mlal_high.h
       third-party/simde/arm/neon/mla_n.h
       third-party/simde/arm/neon/movl.h
       third-party/simde/arm/neon/movl_high.h
       third-party/simde/arm/neon/mul.h
       third-party/simde/arm/neon/mull.h
       third-party/simde/arm/neon/mull_n.h
       third-party/simde/arm/neon/mul_n.h
       third-party/simde/arm/neon/padal.h
       third-party/simde/arm/neon/padd.h
       third-party/simde/arm/neon/paddl.h
       third-party/simde/arm/neon/pmax.h
       third-party/simde/arm/neon/qadd.h
       third-party/simde/arm/neon/qdmulh.h
       third-party/simde/arm/neon/qdmull.h
       third-party/simde/arm/neon/qmovn.h
       third-party/simde/arm/neon/qmovn_high.h
       third-party/simde/arm/neon/qmovun.h
       third-party/simde/arm/neon/qrdmulh.h
       third-party/simde/arm/neon/qrdmulh_n.h
       third-party/simde/arm/neon/reinterpret.h
       third-party/simde/arm/neon/rhadd.h
       third-party/simde/arm/neon/set_lane.h
       third-party/simde/arm/neon/st1_lane.h
       third-party/simde/arm/neon/st3.h
       third-party/simde/arm/neon/st4.h
       third-party/simde/arm/neon/subl.h
       third-party/simde/arm/neon/trn1.h
       third-party/simde/arm/neon/trn2.h
       third-party/simde/arm/neon/trn.h
       third-party/simde/arm/neon/uzp1.h
       third-party/simde/arm/neon/uzp2.h
       third-party/simde/arm/neon/uzp.h
       third-party/simde/arm/neon/zip1.h
       third-party/simde/arm/neon/zip2.h
       third-party/simde/arm/neon/zip.h
Copyright: 2020 Evan Nemerson <evan@nemerson.com>
           2020 Sean Maher <seanptmaher@gmail.com> (Copyright owned by Google, LLC)
License: MIT

Files: third-party/simde/arm/neon/ld1_dup.h
       third-party/simde/arm/neon/ld1.h
       third-party/simde/arm/neon/ld1_lane.h
       third-party/simde/arm/neon/ld2.h
       third-party/simde/arm/neon/ld4_lane.h
       third-party/simde/arm/neon/qdmulh_lane.h
       third-party/simde/arm/neon/qdmulh_n.h
       third-party/simde/arm/neon/qrshrn_n.h
       third-party/simde/arm/neon/qrshrun_n.h
       third-party/simde/arm/neon/qshrn_n.h
       third-party/simde/arm/neon/qshrun_n.h
       third-party/simde/arm/neon/recpe.h
       third-party/simde/arm/neon/recps.h
       third-party/simde/arm/neon/rshrn_n.h
       third-party/simde/arm/neon/rsqrte.h
       third-party/simde/arm/neon/rsqrts.h
       third-party/simde/arm/neon/shrn_n.h
       third-party/simde/arm/neon/sri_n.h
       third-party/simde/arm/neon/st2.h
       third-party/simde/arm/neon/st2_lane.h
       third-party/simde/arm/neon/st3_lane.h
       third-party/simde/arm/neon/st4_lane.h
Copyright: 2020 Evan Nemerson <evan@nemerson.com>
           2021 Zhi An Ng <zhin@google.com> (Copyright owned by Google, LLC)
License: MIT

Files: src/third-party/base64/*
Copyright: 2004-2017 by René Nyffenegger
License: AS-IS
 This source code is provided 'as-is', without any express or implied
 warranty. In no event will the author be held liable for any damages
 arising from the use of this software.
 .
 Permission is granted to anyone to use this software for any purpose,
 including commercial applications, and to alter it and redistribute it
 freely, subject to the following restrictions:
 .
  1. The origin of this source code must not be misrepresented; you must not
     claim that you wrote the original source code. If you use this source code
     in a product, an acknowledgment in the product documentation would be
     appreciated but is not required.
 .
  2. Altered source versions must be plainly marked as such, and must not be
     misrepresented as being the original source code.
 .
  3. This notice may not be removed or altered from any source distribution.

Files: src/third-party/ksw2/*
Copyright: 2018-     Dana-Farber Cancer Institute
           2017-2018 Broad Institute, Inc.
License: MIT

Files: debian/*
Copyright: 2016 Afif Elghraoui <afif@debian.org>
License: BSD-3-Clause

License: BSD-3-Clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 1. Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 2. Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
 3. Neither the name of the University nor the names of its contributors
    may be used to endorse or promote products derived from this software
    without specific prior written permission.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE HOLDERS OR
 CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
 EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
 PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License: MIT
 Permission is hereby  granted, free of charge, to any  person obtaining a copy
 of this software and associated  documentation files (the "Software"), to deal
 in the Software  without restriction, including without  limitation the rights
 to  use, copy,  modify, merge,  publish, distribute,  sublicense, and/or  sell
 copies  of  the Software,  and  to  permit persons  to  whom  the Software  is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in all
 copies or substantial portions of the Software.
 .
 THE SOFTWARE  IS PROVIDED "AS  IS", WITHOUT WARRANTY  OF ANY KIND,  EXPRESS OR
 IMPLIED,  INCLUDING BUT  NOT  LIMITED TO  THE  WARRANTIES OF  MERCHANTABILITY,
 FITNESS FOR  A PARTICULAR PURPOSE AND  NONINFRINGEMENT. IN NO EVENT  SHALL THE
 AUTHORS  OR COPYRIGHT  HOLDERS  BE  LIABLE FOR  ANY  CLAIM,  DAMAGES OR  OTHER
 LIABILITY, WHETHER IN AN ACTION OF  CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE  OR THE USE OR OTHER DEALINGS IN THE
 SOFTWARE.
