Date: 2021-03-03T22:27:34+00:00

Actual source code: ex14f.F90
petsc-3.14.5 2021-03-03
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      1: !
      2: !
      3: !  Solves a nonlinear system in parallel with a user-defined
      4: !  Newton method that uses KSP to solve the linearized Newton sytems.  This solver
      5: !  is a very simplistic inexact Newton method.  The intent of this code is to
      6: !  demonstrate the repeated solution of linear sytems with the same nonzero pattern.
      7: !
      8: !  This is NOT the recommended approach for solving nonlinear problems with PETSc!
      9: !  We urge users to employ the SNES component for solving nonlinear problems whenever
     10: !  possible, as it offers many advantages over coding nonlinear solvers independently.
     11: !
     12: !  We solve the  Bratu (SFI - solid fuel ignition) problem in a 2D rectangular
     13: !  domain, using distributed arrays (DMDAs) to partition the parallel grid.
     14: !
     15: !  The command line options include:
     16: !  -par <parameter>, where <parameter> indicates the problem's nonlinearity
     17: !     problem SFI:  <parameter> = Bratu parameter (0 <= par <= 6.81)
     18: !  -mx <xg>, where <xg> = number of grid points in the x-direction
     19: !  -my <yg>, where <yg> = number of grid points in the y-direction
     20: !  -Nx <npx>, where <npx> = number of processors in the x-direction
     21: !  -Ny <npy>, where <npy> = number of processors in the y-direction
     22: !  -mf use matrix free for matrix vector product
     23: !
     24: !!/*T
     25: !   Concepts: KSP^writing a user-defined nonlinear solver
     26: !   Concepts: DMDA^using distributed arrays
     27: !   Processors: n
     28: !T*/

     31: !  ------------------------------------------------------------------------
     32: !
     33: !    Solid Fuel Ignition (SFI) problem.  This problem is modeled by
     34: !    the partial differential equation
     35: !
     36: !            -Laplacian u - lambda*exp(u) = 0,  0 < x,y < 1,
     37: !
     38: !    with boundary conditions
     39: !
     40: !             u = 0  for  x = 0, x = 1, y = 0, y = 1.
     41: !
     42: !    A finite difference approximation with the usual 5-point stencil
     43: !    is used to discretize the boundary value problem to obtain a nonlinear
     44: !    system of equations.
     45: !
     46: !    The SNES version of this problem is:  snes/tutorials/ex5f.F
     47: !
     48: !  -------------------------------------------------------------------------
     49:       module mymoduleex14f
     50: #include <petsc/finclude/petscksp.h>
     51:       use petscdmda
     52:       use petscksp
     53:       Vec      localX
     54:       PetscInt mx,my
     55:       Mat B
     56:       DM da
     57:       end module

     59:       program main
     60:       use mymoduleex14f
     61:       implicit none

     63:       MPI_Comm comm
     64:       Vec      X,Y,F
     65:       Mat      J
     66:       KSP      ksp

     68:       PetscInt  Nx,Ny,N,ifive,ithree
     69:       PetscBool  flg,nooutput,usemf
     70: !
     71: !      This is the routine to use for matrix-free approach
     72: !
     73:       external mymult

     75: !     --------------- Data to define nonlinear solver --------------
     76:       PetscReal   rtol,ttol
     77:       PetscReal   fnorm,ynorm,xnorm
     78:       PetscInt            max_nonlin_its,one
     79:       PetscInt            lin_its
     80:       PetscInt           i,m
     81:       PetscScalar        mone
     82:       PetscErrorCode ierr

     84:       mone           = -1.0
     85:       rtol           = 1.e-8
     86:       max_nonlin_its = 10
     87:       one            = 1
     88:       ifive          = 5
     89:       ithree         = 3

     91:       call PetscInitialize(PETSC_NULL_CHARACTER,ierr)
     92:       if (ierr .ne. 0) then
     93:         print*,'Unable to initialize PETSc'
     94:         stop
     95:       endif
     96:       comm = PETSC_COMM_WORLD

     98: !  Initialize problem parameters

    100: !
    101:       mx = 4
    102:       my = 4
    103:       call PetscOptionsGetInt(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-mx',mx,flg,ierr)
    104:       call PetscOptionsGetInt(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-my',my,flg,ierr)
    105:       N = mx*my

    107:       nooutput = .false.
    108:       call PetscOptionsHasName(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-no_output',nooutput,ierr)

    110: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    111: !     Create linear solver context
    112: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    114:       call KSPCreate(comm,ksp,ierr)

    116: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    117: !     Create vector data structures
    118: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    120: !
    121: !  Create distributed array (DMDA) to manage parallel grid and vectors
    122: !
    123:       Nx = PETSC_DECIDE
    124:       Ny = PETSC_DECIDE
    125:       call PetscOptionsGetInt(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-Nx',Nx,flg,ierr)
    126:       call PetscOptionsGetInt(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-Ny',Ny,flg,ierr)
    127:       call DMDACreate2d(comm,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_STAR,mx,my,Nx,Ny,one,one,          &
    128:      &                  PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,da,ierr)
    129:       call DMSetFromOptions(da,ierr)
    130:       call DMSetUp(da,ierr)
    131: !
    132: !  Extract global and local vectors from DMDA then duplicate for remaining
    133: !  vectors that are the same types
    134: !
    135:        call DMCreateGlobalVector(da,X,ierr)
    136:        call DMCreateLocalVector(da,localX,ierr)
    137:        call VecDuplicate(X,F,ierr)
    138:        call VecDuplicate(X,Y,ierr)

    141: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    142: !     Create matrix data structure for Jacobian
    143: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    144: !
    145: !     Note:  For the parallel case, vectors and matrices MUST be partitioned
    146: !     accordingly.  When using distributed arrays (DMDAs) to create vectors,
    147: !     the DMDAs determine the problem partitioning.  We must explicitly
    148: !     specify the local matrix dimensions upon its creation for compatibility
    149: !     with the vector distribution.
    150: !
    151: !     Note: Here we only approximately preallocate storage space for the
    152: !     Jacobian.  See the users manual for a discussion of better techniques
    153: !     for preallocating matrix memory.
    154: !
    155:       call VecGetLocalSize(X,m,ierr)
    156:       call MatCreateAIJ(comm,m,m,N,N,ifive,PETSC_NULL_INTEGER,ithree,PETSC_NULL_INTEGER,B,ierr)

    158: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    159: !     if usemf is on then matrix vector product is done via matrix free
    160: !     approach. Note this is just an example, and not realistic because
    161: !     we still use the actual formed matrix, but in reality one would
    162: !     provide their own subroutine that would directly do the matrix
    163: !     vector product and not call MatMult()
    164: !     Note: we put B into a module so it will be visible to the
    165: !     mymult() routine
    166:       usemf = .false.
    167:       call PetscOptionsHasName(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-mf',usemf,ierr)
    168:       if (usemf) then
    169:          call MatCreateShell(comm,m,m,N,N,PETSC_NULL_INTEGER,J,ierr)
    170:          call MatShellSetOperation(J,MATOP_MULT,mymult,ierr)
    171:       else
    172: !        If not doing matrix free then matrix operator, J,  and matrix used
    173: !        to construct preconditioner, B, are the same
    174:         J = B
    175:       endif

    177: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    178: !     Customize linear solver set runtime options
    179: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    180: !
    181: !     Set runtime options (e.g., -ksp_monitor -ksp_rtol <rtol> -ksp_type <type>)
    182: !
    183:        call KSPSetFromOptions(ksp,ierr)

    185: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    186: !     Evaluate initial guess
    187: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    189:        call FormInitialGuess(X,ierr)
    190:        call ComputeFunction(X,F,ierr)
    191:        call VecNorm(F,NORM_2,fnorm,ierr)
    192:        ttol = fnorm*rtol
    193:        if (.not. nooutput) then
    194:          print*, 'Initial function norm ',fnorm
    195:        endif

    197: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    198: !     Solve nonlinear system with a user-defined method
    199: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    201: !  This solver is a very simplistic inexact Newton method, with no
    202: !  no damping strategies or bells and whistles. The intent of this code
    203: !  is merely to demonstrate the repeated solution with KSP of linear
    204: !  sytems with the same nonzero structure.
    205: !
    206: !  This is NOT the recommended approach for solving nonlinear problems
    207: !  with PETSc!  We urge users to employ the SNES component for solving
    208: !  nonlinear problems whenever possible with application codes, as it
    209: !  offers many advantages over coding nonlinear solvers independently.

    211:        do 10 i=0,max_nonlin_its

    213: !  Compute the Jacobian matrix.  See the comments in this routine for
    214: !  important information about setting the flag mat_flag.

    216:          call ComputeJacobian(X,B,ierr)

    218: !  Solve J Y = F, where J is the Jacobian matrix.
    219: !    - First, set the KSP linear operators.  Here the matrix that
    220: !      defines the linear system also serves as the preconditioning
    221: !      matrix.
    222: !    - Then solve the Newton system.

    224:          call KSPSetOperators(ksp,J,B,ierr)
    225:          call KSPSolve(ksp,F,Y,ierr)

    227: !  Compute updated iterate

    229:          call VecNorm(Y,NORM_2,ynorm,ierr)
    230:          call VecAYPX(Y,mone,X,ierr)
    231:          call VecCopy(Y,X,ierr)
    232:          call VecNorm(X,NORM_2,xnorm,ierr)
    233:          call KSPGetIterationNumber(ksp,lin_its,ierr)
    234:          if (.not. nooutput) then
    235:            print*,'linear solve iterations = ',lin_its,' xnorm = ',xnorm,' ynorm = ',ynorm
    236:          endif

    238: !  Evaluate nonlinear function at new location

    240:          call ComputeFunction(X,F,ierr)
    241:          call VecNorm(F,NORM_2,fnorm,ierr)
    242:          if (.not. nooutput) then
    243:            print*, 'Iteration ',i+1,' function norm',fnorm
    244:          endif

    246: !  Test for convergence

    248:        if (fnorm .le. ttol) then
    249:          if (.not. nooutput) then
    250:            print*,'Converged: function norm ',fnorm,' tolerance ',ttol
    251:          endif
    252:          goto 20
    253:        endif
    254:  10   continue
    255:  20   continue

    257:       write(6,100) i+1
    258:  100  format('Number of SNES iterations =',I2)

    260: !     Check if mymult() produces a linear operator
    261:       if (usemf) then
    262:          N = 5
    263:          call MatIsLinear(J,N,flg,ierr)
    264:          if (.not. flg) then
    265:             print *, 'IsLinear',flg
    266:          endif
    267:       endif

    269: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    270: !     Free work space.  All PETSc objects should be destroyed when they
    271: !     are no longer needed.
    272: !  - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    274:        call MatDestroy(B,ierr)
    275:        if (usemf) then
    276:          call MatDestroy(J,ierr)
    277:        endif
    278:        call VecDestroy(localX,ierr)
    279:        call VecDestroy(X,ierr)
    280:        call VecDestroy(Y,ierr)
    281:        call VecDestroy(F,ierr)
    282:        call KSPDestroy(ksp,ierr)
    283:        call DMDestroy(da,ierr)
    284:        call PetscFinalize(ierr)
    285:        end

    287: ! -------------------------------------------------------------------
    288: !
    289: !   FormInitialGuess - Forms initial approximation.
    290: !
    291: !   Input Parameters:
    292: !   X - vector
    293: !
    294: !   Output Parameter:
    295: !   X - vector
    296: !
    297:       subroutine FormInitialGuess(X,ierr)
    298:       use mymoduleex14f
    299:       implicit none

    301:       PetscErrorCode    ierr
    302:       PetscOffset      idx
    303:       Vec       X
    304:       PetscInt  i,j,row
    305:       PetscInt  xs,ys,xm
    306:       PetscInt  ym
    307:       PetscReal one,lambda,temp1,temp,hx,hy
    308:       PetscScalar      xx(2)

    310:       one    = 1.0
    311:       lambda = 6.0
    312:       hx     = one/(mx-1)
    313:       hy     = one/(my-1)
    314:       temp1  = lambda/(lambda + one)

    316: !  Get a pointer to vector data.
    317: !    - VecGetArray() returns a pointer to the data array.
    318: !    - You MUST call VecRestoreArray() when you no longer need access to
    319: !      the array.
    320:        call VecGetArray(X,xx,idx,ierr)

    322: !  Get local grid boundaries (for 2-dimensional DMDA):
    323: !    xs, ys   - starting grid indices (no ghost points)
    324: !    xm, ym   - widths of local grid (no ghost points)

    326:        call DMDAGetCorners(da,xs,ys,PETSC_NULL_INTEGER,xm,ym,PETSC_NULL_INTEGER,ierr)

    328: !  Compute initial guess over the locally owned part of the grid

    330:       do 30 j=ys,ys+ym-1
    331:         temp = (min(j,my-j-1))*hy
    332:         do 40 i=xs,xs+xm-1
    333:           row = i - xs + (j - ys)*xm + 1
    334:           if (i .eq. 0 .or. j .eq. 0 .or. i .eq. mx-1 .or. j .eq. my-1) then
    335:             xx(idx+row) = 0.0
    336:             continue
    337:           endif
    338:           xx(idx+row) = temp1*sqrt(min((min(i,mx-i-1))*hx,temp))
    339:  40     continue
    340:  30   continue

    342: !     Restore vector

    344:        call VecRestoreArray(X,xx,idx,ierr)
    345:        return
    346:        end

    348: ! -------------------------------------------------------------------
    349: !
    350: !   ComputeFunction - Evaluates nonlinear function, F(x).
    351: !
    352: !   Input Parameters:
    353: !.  X - input vector
    354: !
    355: !   Output Parameter:
    356: !.  F - function vector
    357: !
    358:       subroutine  ComputeFunction(X,F,ierr)
    359:       use mymoduleex14f
    360:       implicit none

    362:       Vec              X,F
    363:       PetscInt         gys,gxm,gym
    364:       PetscOffset      idx,idf
    365:       PetscErrorCode ierr
    366:       PetscInt i,j,row,xs,ys,xm,ym,gxs
    367:       PetscInt rowf
    368:       PetscReal two,one,lambda,hx
    369:       PetscReal hy,hxdhy,hydhx,sc
    370:       PetscScalar      u,uxx,uyy,xx(2),ff(2)

    372:       two    = 2.0
    373:       one    = 1.0
    374:       lambda = 6.0

    376:       hx     = one/(mx-1)
    377:       hy     = one/(my-1)
    378:       sc     = hx*hy*lambda
    379:       hxdhy  = hx/hy
    380:       hydhx  = hy/hx

    382: !  Scatter ghost points to local vector, using the 2-step process
    383: !     DMGlobalToLocalBegin(), DMGlobalToLocalEnd().
    384: !  By placing code between these two statements, computations can be
    385: !  done while messages are in transition.
    386: !
    387:       call DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX,ierr)
    388:       call DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX,ierr)

    390: !  Get pointers to vector data

    392:       call VecGetArray(localX,xx,idx,ierr)
    393:       call VecGetArray(F,ff,idf,ierr)

    395: !  Get local grid boundaries

    397:       call DMDAGetCorners(da,xs,ys,PETSC_NULL_INTEGER,xm,ym,PETSC_NULL_INTEGER,ierr)
    398:       call DMDAGetGhostCorners(da,gxs,gys,PETSC_NULL_INTEGER,gxm,gym,PETSC_NULL_INTEGER,ierr)

    400: !  Compute function over the locally owned part of the grid
    401:       rowf = 0
    402:       do 50 j=ys,ys+ym-1

    404:         row  = (j - gys)*gxm + xs - gxs
    405:         do 60 i=xs,xs+xm-1
    406:           row  = row + 1
    407:           rowf = rowf + 1

    409:           if (i .eq. 0 .or. j .eq. 0 .or. i .eq. mx-1 .or. j .eq. my-1) then
    410:             ff(idf+rowf) = xx(idx+row)
    411:             goto 60
    412:           endif
    413:           u   = xx(idx+row)
    414:           uxx = (two*u - xx(idx+row-1) - xx(idx+row+1))*hydhx
    415:           uyy = (two*u - xx(idx+row-gxm) - xx(idx+row+gxm))*hxdhy
    416:           ff(idf+rowf) = uxx + uyy - sc*exp(u)
    417:  60     continue
    418:  50   continue

    420: !  Restore vectors

    422:        call VecRestoreArray(localX,xx,idx,ierr)
    423:        call VecRestoreArray(F,ff,idf,ierr)
    424:        return
    425:        end

    427: ! -------------------------------------------------------------------
    428: !
    429: !   ComputeJacobian - Evaluates Jacobian matrix.
    430: !
    431: !   Input Parameters:
    432: !   x - input vector
    433: !
    434: !   Output Parameters:
    435: !   jac - Jacobian matrix
    436: !   flag - flag indicating matrix structure
    437: !
    438: !   Notes:
    439: !   Due to grid point reordering with DMDAs, we must always work
    440: !   with the local grid points, and then transform them to the new
    441: !   global numbering with the 'ltog' mapping
    442: !   We cannot work directly with the global numbers for the original
    443: !   uniprocessor grid!
    444: !
    445:       subroutine ComputeJacobian(X,jac,ierr)
    446:       use mymoduleex14f
    447:       implicit none

    449:       Vec         X
    450:       Mat         jac
    451:       PetscInt     ltog(2)
    452:       PetscOffset idltog,idx
    453:       PetscErrorCode ierr
    454:       PetscInt xs,ys,xm,ym
    455:       PetscInt gxs,gys,gxm,gym
    456:       PetscInt grow(1),i,j
    457:       PetscInt row,ione
    458:       PetscInt col(5),ifive
    459:       PetscScalar two,one,lambda
    460:       PetscScalar v(5),hx,hy,hxdhy
    461:       PetscScalar hydhx,sc,xx(2)
    462:       ISLocalToGlobalMapping ltogm

    464:       ione   = 1
    465:       ifive  = 5
    466:       one    = 1.0
    467:       two    = 2.0
    468:       hx     = one/(mx-1)
    469:       hy     = one/(my-1)
    470:       sc     = hx*hy
    471:       hxdhy  = hx/hy
    472:       hydhx  = hy/hx
    473:       lambda = 6.0

    475: !  Scatter ghost points to local vector, using the 2-step process
    476: !     DMGlobalToLocalBegin(), DMGlobalToLocalEnd().
    477: !  By placing code between these two statements, computations can be
    478: !  done while messages are in transition.

    480:       call DMGlobalToLocalBegin(da,X,INSERT_VALUES,localX,ierr)
    481:       call DMGlobalToLocalEnd(da,X,INSERT_VALUES,localX,ierr)

    483: !  Get pointer to vector data

    485:       call VecGetArray(localX,xx,idx,ierr)

    487: !  Get local grid boundaries

    489:       call DMDAGetCorners(da,xs,ys,PETSC_NULL_INTEGER,xm,ym,PETSC_NULL_INTEGER,ierr)
    490:       call DMDAGetGhostCorners(da,gxs,gys,PETSC_NULL_INTEGER,gxm,gym,PETSC_NULL_INTEGER,ierr)

    492: !  Get the global node numbers for all local nodes, including ghost points

    494:       call DMGetLocalToGlobalMapping(da,ltogm,ierr)
    495:       call ISLocalToGlobalMappingGetIndices(ltogm,ltog,idltog,ierr)

    497: !  Compute entries for the locally owned part of the Jacobian.
    498: !   - Currently, all PETSc parallel matrix formats are partitioned by
    499: !     contiguous chunks of rows across the processors. The 'grow'
    500: !     parameter computed below specifies the global row number
    501: !     corresponding to each local grid point.
    502: !   - Each processor needs to insert only elements that it owns
    503: !     locally (but any non-local elements will be sent to the
    504: !     appropriate processor during matrix assembly).
    505: !   - Always specify global row and columns of matrix entries.
    506: !   - Here, we set all entries for a particular row at once.

    508:       do 10 j=ys,ys+ym-1
    509:         row = (j - gys)*gxm + xs - gxs
    510:         do 20 i=xs,xs+xm-1
    511:           row = row + 1
    512:           grow(1) = ltog(idltog+row)
    513:           if (i .eq. 0 .or. j .eq. 0 .or. i .eq. (mx-1) .or. j .eq. (my-1)) then
    514:              call MatSetValues(jac,ione,grow,ione,grow,one,INSERT_VALUES,ierr)
    515:              go to 20
    516:           endif
    517:           v(1)   = -hxdhy
    518:           col(1) = ltog(idltog+row - gxm)
    519:           v(2)   = -hydhx
    520:           col(2) = ltog(idltog+row - 1)
    521:           v(3)   = two*(hydhx + hxdhy) - sc*lambda*exp(xx(idx+row))
    522:           col(3) = grow(1)
    523:           v(4)   = -hydhx
    524:           col(4) = ltog(idltog+row + 1)
    525:           v(5)   = -hxdhy
    526:           col(5) = ltog(idltog+row + gxm)
    527:           call MatSetValues(jac,ione,grow,ifive,col,v,INSERT_VALUES,ierr)
    528:  20     continue
    529:  10   continue

    531:       call ISLocalToGlobalMappingRestoreIndices(ltogm,ltog,idltog,ierr)

    533: !  Assemble matrix, using the 2-step process:
    534: !    MatAssemblyBegin(), MatAssemblyEnd().
    535: !  By placing code between these two statements, computations can be
    536: !  done while messages are in transition.

    538:       call MatAssemblyBegin(jac,MAT_FINAL_ASSEMBLY,ierr)
    539:       call VecRestoreArray(localX,xx,idx,ierr)
    540:       call MatAssemblyEnd(jac,MAT_FINAL_ASSEMBLY,ierr)
    541:       return
    542:       end

    545: ! -------------------------------------------------------------------
    546: !
    547: !   MyMult - user provided matrix multiply
    548: !
    549: !   Input Parameters:
    550: !.  X - input vector
    551: !
    552: !   Output Parameter:
    553: !.  F - function vector
    554: !
    555:       subroutine  MyMult(J,X,F,ierr)
    556:       use mymoduleex14f
    557:       implicit none

    559:       Mat     J
    560:       Vec     X,F
    561:       PetscErrorCode ierr
    562: !
    563: !       Here we use the actual formed matrix B; users would
    564: !     instead write their own matrix vector product routine
    565: !
    566:       call MatMult(B,X,F,ierr)
    567:       return
    568:       end

    570: !/*TEST
    571: !
    572: !   test:
    573: !      args: -no_output -ksp_gmres_cgs_refinement_type refine_always
    574: !      output_file: output/ex14_1.out
    575: !      requires: !single
    576: !
    577: !TEST*/