Date: 2021-03-03T22:26:48+00:00

Actual source code: dageometry.c
petsc-3.14.5 2021-03-03
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      1: #include <petscsf.h>
      2: #include <petsc/private/dmdaimpl.h>

      5: /*@
      6:   DMDAConvertToCell - Convert (i,j,k) to local cell number

      8:   Not Collective

     10:   Input Parameter:
     11: + da - the distributed array
     12: - s - A MatStencil giving (i,j,k)

     14:   Output Parameter:
     15: . cell - the local cell number

     17:   Level: developer
     18: @*/
     19: PetscErrorCode DMDAConvertToCell(DM dm, MatStencil s, PetscInt *cell)
     20: {
     21:   DM_DA          *da = (DM_DA*) dm->data;
     22:   const PetscInt dim = dm->dim;
     23:   const PetscInt mx  = (da->Xe - da->Xs)/da->w, my = da->Ye - da->Ys /*, mz = da->Ze - da->Zs*/;
     24:   const PetscInt il  = s.i - da->Xs/da->w, jl = dim > 1 ? s.j - da->Ys : 0, kl = dim > 2 ? s.k - da->Zs : 0;

     27:   *cell = -1;
     28:   if ((s.i < da->Xs/da->w) || (s.i >= da->Xe/da->w))    SETERRQ3(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Stencil i %D should be in [%D, %D)", s.i, da->Xs/da->w, da->Xe/da->w);
     29:   if ((dim > 1) && ((s.j < da->Ys) || (s.j >= da->Ye))) SETERRQ3(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Stencil j %D should be in [%D, %D)", s.j, da->Ys, da->Ye);
     30:   if ((dim > 2) && ((s.k < da->Zs) || (s.k >= da->Ze))) SETERRQ3(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Stencil k %D should be in [%D, %D)", s.k, da->Zs, da->Ze);
     31:   *cell = (kl*my + jl)*mx + il;
     32:   return(0);
     33: }

     35: PetscErrorCode private_DMDALocatePointsIS_2D_Regular(DM dmregular,Vec pos,IS *iscell)
     36: {
     37:   PetscInt          n,bs,p,npoints;
     38:   PetscInt          xs,xe,Xs,Xe,mxlocal;
     39:   PetscInt          ys,ye,Ys,Ye,mylocal;
     40:   PetscInt          d,c0,c1;
     41:   PetscReal         gmin_l[2],gmax_l[2],dx[2];
     42:   PetscReal         gmin[2],gmax[2];
     43:   PetscInt          *cellidx;
     44:   Vec               coor;
     45:   const PetscScalar *_coor;
     46:   PetscErrorCode    ierr;

     49:   DMDAGetCorners(dmregular,&xs,&ys,NULL,&xe,&ye,NULL);
     50:   DMDAGetGhostCorners(dmregular,&Xs,&Ys,NULL,&Xe,&Ye,NULL);
     51:   xe += xs; Xe += Xs; if (xs != Xs) xs -= 1;
     52:   ye += ys; Ye += Ys; if (ys != Ys) ys -= 1;

     54:   mxlocal = xe - xs - 1;
     55:   mylocal = ye - ys - 1;

     57:   DMGetCoordinatesLocal(dmregular,&coor);
     58:   VecGetArrayRead(coor,&_coor);
     59:   c0 = (xs-Xs) + (ys-Ys)*(Xe-Xs);
     60:   c1 = (xe-2-Xs+1) + (ye-2-Ys+1)*(Xe-Xs);

     62:   gmin_l[0] = PetscRealPart(_coor[2*c0+0]);
     63:   gmin_l[1] = PetscRealPart(_coor[2*c0+1]);

     65:   gmax_l[0] = PetscRealPart(_coor[2*c1+0]);
     66:   gmax_l[1] = PetscRealPart(_coor[2*c1+1]);

     68:   dx[0] = (gmax_l[0]-gmin_l[0])/((PetscReal)mxlocal);
     69:   dx[1] = (gmax_l[1]-gmin_l[1])/((PetscReal)mylocal);

     71:   VecRestoreArrayRead(coor,&_coor);

     73:   DMGetBoundingBox(dmregular,gmin,gmax);

     75:   VecGetLocalSize(pos,&n);
     76:   VecGetBlockSize(pos,&bs);
     77:   npoints = n/bs;

     79:   PetscMalloc1(npoints,&cellidx);
     80:   VecGetArrayRead(pos,&_coor);
     81:   for (p=0; p<npoints; p++) {
     82:     PetscReal coor_p[2];
     83:     PetscInt  mi[2];

     85:     coor_p[0] = PetscRealPart(_coor[2*p]);
     86:     coor_p[1] = PetscRealPart(_coor[2*p+1]);

     88:     cellidx[p] = DMLOCATEPOINT_POINT_NOT_FOUND;

     90:     if (coor_p[0] < gmin_l[0]) { continue; }
     91:     if (coor_p[0] > gmax_l[0]) { continue; }
     92:     if (coor_p[1] < gmin_l[1]) { continue; }
     93:     if (coor_p[1] > gmax_l[1]) { continue; }

     95:     for (d=0; d<2; d++) {
     96:       mi[d] = (PetscInt)((coor_p[d] - gmin[d])/dx[d]);
     97:     }

     99:     if (mi[0] < xs)     { continue; }
    100:     if (mi[0] > (xe-1)) { continue; }
    101:     if (mi[1] < ys)     { continue; }
    102:     if (mi[1] > (ye-1)) { continue; }

    104:     if (mi[0] == (xe-1)) { mi[0]--; }
    105:     if (mi[1] == (ye-1)) { mi[1]--; }

    107:     cellidx[p] = (mi[0]-xs) + (mi[1]-ys) * mxlocal;
    108:   }
    109:   VecRestoreArrayRead(pos,&_coor);
    110:   ISCreateGeneral(PETSC_COMM_SELF,npoints,cellidx,PETSC_OWN_POINTER,iscell);
    111:   return(0);
    112: }

    114: PetscErrorCode private_DMDALocatePointsIS_3D_Regular(DM dmregular,Vec pos,IS *iscell)
    115: {
    116:   PetscInt          n,bs,p,npoints;
    117:   PetscInt          xs,xe,Xs,Xe,mxlocal;
    118:   PetscInt          ys,ye,Ys,Ye,mylocal;
    119:   PetscInt          zs,ze,Zs,Ze,mzlocal;
    120:   PetscInt          d,c0,c1;
    121:   PetscReal         gmin_l[3],gmax_l[3],dx[3];
    122:   PetscReal         gmin[3],gmax[3];
    123:   PetscInt          *cellidx;
    124:   Vec               coor;
    125:   const PetscScalar *_coor;
    126:   PetscErrorCode    ierr;

    129:   DMDAGetCorners(dmregular,&xs,&ys,&zs,&xe,&ye,&ze);
    130:   DMDAGetGhostCorners(dmregular,&Xs,&Ys,&Zs,&Xe,&Ye,&Ze);
    131:   xe += xs; Xe += Xs; if (xs != Xs) xs -= 1;
    132:   ye += ys; Ye += Ys; if (ys != Ys) ys -= 1;
    133:   ze += zs; Ze += Zs; if (zs != Zs) zs -= 1;

    135:   mxlocal = xe - xs - 1;
    136:   mylocal = ye - ys - 1;
    137:   mzlocal = ze - zs - 1;

    139:   DMGetCoordinatesLocal(dmregular,&coor);
    140:   VecGetArrayRead(coor,&_coor);
    141:   c0 = (xs-Xs)     + (ys-Ys)    *(Xe-Xs) + (zs-Zs)    *(Xe-Xs)*(Ye-Ys);
    142:   c1 = (xe-2-Xs+1) + (ye-2-Ys+1)*(Xe-Xs) + (ze-2-Zs+1)*(Xe-Xs)*(Ye-Ys);

    144:   gmin_l[0] = PetscRealPart(_coor[3*c0+0]);
    145:   gmin_l[1] = PetscRealPart(_coor[3*c0+1]);
    146:   gmin_l[2] = PetscRealPart(_coor[3*c0+2]);

    148:   gmax_l[0] = PetscRealPart(_coor[3*c1+0]);
    149:   gmax_l[1] = PetscRealPart(_coor[3*c1+1]);
    150:   gmax_l[2] = PetscRealPart(_coor[3*c1+2]);

    152:   dx[0] = (gmax_l[0]-gmin_l[0])/((PetscReal)mxlocal);
    153:   dx[1] = (gmax_l[1]-gmin_l[1])/((PetscReal)mylocal);
    154:   dx[2] = (gmax_l[2]-gmin_l[2])/((PetscReal)mzlocal);

    156:   VecRestoreArrayRead(coor,&_coor);

    158:   DMGetBoundingBox(dmregular,gmin,gmax);

    160:   VecGetLocalSize(pos,&n);
    161:   VecGetBlockSize(pos,&bs);
    162:   npoints = n/bs;

    164:   PetscMalloc1(npoints,&cellidx);
    165:   VecGetArrayRead(pos,&_coor);
    166:   for (p=0; p<npoints; p++) {
    167:     PetscReal coor_p[3];
    168:     PetscInt  mi[3];

    170:     coor_p[0] = PetscRealPart(_coor[3*p]);
    171:     coor_p[1] = PetscRealPart(_coor[3*p+1]);
    172:     coor_p[2] = PetscRealPart(_coor[3*p+2]);

    174:     cellidx[p] = DMLOCATEPOINT_POINT_NOT_FOUND;

    176:     if (coor_p[0] < gmin_l[0]) { continue; }
    177:     if (coor_p[0] > gmax_l[0]) { continue; }
    178:     if (coor_p[1] < gmin_l[1]) { continue; }
    179:     if (coor_p[1] > gmax_l[1]) { continue; }
    180:     if (coor_p[2] < gmin_l[2]) { continue; }
    181:     if (coor_p[2] > gmax_l[2]) { continue; }

    183:     for (d=0; d<3; d++) {
    184:       mi[d] = (PetscInt)((coor_p[d] - gmin[d])/dx[d]);
    185:     }

    187:     if (mi[0] < xs)     { continue; }
    188:     if (mi[0] > (xe-1)) { continue; }
    189:     if (mi[1] < ys)     { continue; }
    190:     if (mi[1] > (ye-1)) { continue; }
    191:     if (mi[2] < zs)     { continue; }
    192:     if (mi[2] > (ze-1)) { continue; }

    194:     if (mi[0] == (xe-1)) { mi[0]--; }
    195:     if (mi[1] == (ye-1)) { mi[1]--; }
    196:     if (mi[2] == (ze-1)) { mi[2]--; }

    198:     cellidx[p] = (mi[0]-xs) + (mi[1]-ys) * mxlocal + (mi[2]-zs) * mxlocal * mylocal;
    199:   }
    200:   VecRestoreArrayRead(pos,&_coor);
    201:   ISCreateGeneral(PETSC_COMM_SELF,npoints,cellidx,PETSC_OWN_POINTER,iscell);
    202:   return(0);
    203: }

    205: PetscErrorCode DMLocatePoints_DA_Regular(DM dm,Vec pos,DMPointLocationType ltype,PetscSF cellSF)
    206: {
    207:   IS             iscell;
    208:   PetscSFNode    *cells;
    209:   PetscInt       p,bs,dim,npoints,nfound;
    210:   const PetscInt *boxCells;

    214:   VecGetBlockSize(pos,&dim);
    215:   switch (dim) {
    216:     case 1:
    217:       SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Support not provided for 1D");
    218:     case 2:
    219:       private_DMDALocatePointsIS_2D_Regular(dm,pos,&iscell);
    220:       break;
    221:     case 3:
    222:       private_DMDALocatePointsIS_3D_Regular(dm,pos,&iscell);
    223:       break;
    224:     default:
    225:       SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Unsupport spatial dimension");
    226:   }

    228:   VecGetLocalSize(pos,&npoints);
    229:   VecGetBlockSize(pos,&bs);
    230:   npoints = npoints / bs;

    232:   PetscMalloc1(npoints, &cells);
    233:   ISGetIndices(iscell, &boxCells);

    235:   for (p=0; p<npoints; p++) {
    236:     cells[p].rank  = 0;
    237:     cells[p].index = boxCells[p];
    238:   }
    239:   ISRestoreIndices(iscell, &boxCells);

    241:   nfound = npoints;
    242:   PetscSFSetGraph(cellSF, npoints, nfound, NULL, PETSC_OWN_POINTER, cells, PETSC_OWN_POINTER);
    243:   ISDestroy(&iscell);
    244:   return(0);
    245: }