PXTLATE(1)

NAME
pxtlate - Translate DNA alignment to amino acids.

SYNOPSIS
pxtlate [OPTION]...

DESCRIPTION
Translate DNA alignment to amino acids. NOTE: assumes sequences are in frame. This will take fasta, fastq, phylip, and nexus inputs.

-s, --seqf=FILE
    input nucleotide sequence file, stdin otherwise

-t, --table=STRING
    which translation table to use. currently available: 'std' (standard, default) 'vmt' (vertebrate mtDNA) 'ivmt' (invertebrate mtDNA) 'ymt' (yeast mtDNA)

-o, --outf=FILE
    output aa sequence file, stout otherwise

-h, --help
    display this help and exit

-V, --version
    display version and exit

REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.