PXSTREC(1)

NAME
pxstrec - This will conduct state reconstruction analyses.

SYNOPSIS
pxstrec [OPTION]... [FILE]...

DESCRIPTION
This will conduct state reconstruction analyses.

-d, --dataf=FILE
    input data file

-w, --datawide
    data is in wide format so (001 instead of 2)

-z, --dataz
    data is in probability format (0,1,0,0)

-t, --treef=FILE
    input tree file

-c, --conf=FILE
    configuration file

-o, --outanc=FILE
    output file for ancestral calc

-n, --outstnum=FILE output file for stochastic mapping number

-a, --outstnumany=FILE output file for stochastic mapping number any

-m, --outsttim=FILE output file for stochastic mapping duration

-p, --periods=NUMS
    comma separated times

-l, --logf=FILE
    log file, stout otherwise

-h, --help
    display this help and exit

-V, --version
    display version and exit

REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.