PXAA2CDN(1)

NAME
pxaa2cdn - Takes in AA alignment and unaligned Nucleotide file to give a Codon Alignment.

SYNOPSIS
pxaa2cdn [OPTION]...

DESCRIPTION
Takes in AA alignment and unaligned Nucleotide file to give a Codon Alignment. This will get rid of any sequences found in either only the Nucleotide or the Amino Acid Alignment This will take fasta, fastq, phylip, and nexus inputs.

-a, --aaseqf=FILE
    input sequence file, stdin otherwise

-n, --nucseqf=FILE
    input sequence file, stdin otherwise

-o, --outf=FILE
    output fasta file, stout otherwise

-h, --help
    display this help and exit

-V, --version
    display version and exit

REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.