
The .cm files in this folder were generated by extracting only those Rfam entries that
had members from the Bacteria, Viruses, and Archaea divisions (based on their taxonomy
description in the public Rfam MySQL database).

For more details, see the __build/ directory and https://github.com/tseemann/prokka/issues/243.


$ for file in __build/Rfam_*_14.1.txt; do tail -n +2 $file; done | cut -f 2 | sort | uniq -c | sort -rn
    723 Gene; sRNA;
    279 Cis-reg;
     68 Gene; CRISPR;
     62 Gene; antisense;
     60 Gene; snRNA; snoRNA; CD-box;
     57 Gene;
     48 Cis-reg; riboswitch;
     39 Gene; miRNA;
     34 Cis-reg; leader;
     33 Cis-reg; thermoregulator;
     26 Cis-reg; frameshift_element;
     21 Intron;
     21 Gene; ribozyme;
     18 Gene; snRNA; snoRNA; HACA-box;
     12 Gene; antitoxin;
     11 Cis-reg; IRES;
      2 Gene; snRNA;
      1 Gene; snRNA; snoRNA; HACA-box
