RF00010	Gene; ribozyme;	Bacterial RNase P class A
RF00017	Gene;	Metazoan signal recognition particle RNA
RF00028	Intron;	Group I catalytic intron
RF00029	Intron;	Group II catalytic intron
RF00030	Gene; ribozyme;	RNase MRP
RF00032	Cis-reg;	Histone 3' UTR stem-loop
RF00050	Cis-reg; riboswitch;	FMN riboswitch (RFN element)
RF00058	Gene; snRNA; snoRNA; HACA-box;	HgcF RNA (Pab35)
RF00059	Cis-reg; riboswitch;	TPP riboswitch (THI element)
RF00060	Gene; snRNA; snoRNA; HACA-box;	HgcE RNA (Pab105)
RF00062	Gene;	HgcC family RNA
RF00063	Gene;	SscA RNA
RF00064	Gene; snRNA; snoRNA; HACA-box	HgcG RNA (Pab40)
RF00065	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA snoR9
RF00095	Gene; snRNA; snoRNA; CD-box;	Pyrococcus C/D box small nucleolar RNA
RF00150	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA SNORD42
RF00169	Gene;	Bacterial small signal recognition particle RNA
RF00174	Cis-reg; riboswitch;	Cobalamin riboswitch
RF00373	Gene; ribozyme;	Archaeal RNase P
RF00380	Cis-reg; riboswitch;	ykoK leader
RF00504	Cis-reg; riboswitch;	Glycine riboswitch
RF00517	Cis-reg; leader;	serC leader
RF00845	Gene; miRNA;	microRNA MIR158
RF01051	Cis-reg;	Cyclic di-GMP-I riboswitch
RF01068	Cis-reg;	Guanidine-II riboswitch
RF01119	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR32
RF01120	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR33
RF01121	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR38
RF01122	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR39
RF01123	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR35
RF01124	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR36
RF01125	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR4
RF01126	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR41
RF01127	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR42
RF01128	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR42
RF01129	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR44
RF01130	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR46
RF01131	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR47
RF01132	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR48
RF01133	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR3
RF01134	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR30
RF01135	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR24
RF01136	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR28
RF01137	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR21
RF01138	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR23
RF01139	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR2
RF01140	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR20
RF01141	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR18
RF01142	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR19
RF01143	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR16
RF01144	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR17
RF01145	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR14
RF01146	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR15
RF01147	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR12
RF01149	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR10
RF01150	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR11
RF01152	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR1
RF01273	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR34
RF01274	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR45
RF01275	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR22
RF01276	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR53
RF01297	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR40
RF01303	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR49
RF01304	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR5
RF01305	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR51
RF01306	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR52
RF01307	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR55
RF01308	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR58
RF01309	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR60
RF01310	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR7
RF01312	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR9
RF01319	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01320	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01322	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01324	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01326	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01328	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01337	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01338	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01339	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01350	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01351	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01353	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01354	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01355	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01358	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01360	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01369	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01373	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01375	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01377	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01378	Gene; CRISPR;	CRISPR RNA direct repeat element
RF01380	Cis-reg;	Human immunodeficiency virus type 1 major splice donor
RF01419	Gene; antisense;	Antisense RNA which regulates isiA expression
RF01689	Cis-reg; riboswitch;	AdoCbl variant RNA
RF01717	Cis-reg;	PhotoRC-II RNA
RF01722	Gene; sRNA;	Pyrobac-1 RNA
RF01725	Cis-reg; riboswitch;	SAM-I/IV variant riboswitch
RF01734	Cis-reg; riboswitch;	Fluoride riboswitch
RF01737	Cis-reg;	flpD RNA
RF01745	Cis-reg;	manA RNA
RF01761	Cis-reg;	wcaG RNA
RF01829	Gene; snRNA; snoRNA; CD-box;	sR6 snoRNA
RF01854	Gene;	Bacterial large signal recognition particle RNA
RF01856	Gene;	Protozoan signal recognition particle RNA
RF01857	Gene;	Archaeal signal recognition particle RNA
RF01982	Cis-reg;	Pyrrolysine insertion sequence 1
RF01998	Intron;	Group II catalytic intron D1-D4-1
RF01999	Intron;	Group II catalytic intron D1-D4-2
RF02001	Intron;	Group II catalytic intron D1-D4-3
RF02003	Intron;	Group II catalytic intron D1-D4-4
RF02005	Intron;	Group II catalytic intron D1-D4-6
RF02012	Intron;	Group II catalytic intron D1-D4-7
RF02033	Gene;	HNH endonuclease-associated RNA and ORF (HEARO) RNA
RF02163	Gene; snRNA; snoRNA; CD-box;	Small nucleolar RNA sR-tMet
RF02194	Gene; antisense;	Bacterial antisense RNA HPnc0260
RF02253	Cis-reg;	Iron response element II
RF02276	Gene; ribozyme;	Hammerhead ribozyme (type II)
RF02357	Gene; ribozyme;	RNaseP truncated form
RF02509	Cis-reg;	Pyrrolysine insertion sequence mtbB
RF02510	Cis-reg;	Pyrrolysine insertion sequence mttB
RF02511	Cis-reg;	Pyrrolysine insertion sequence TetR
RF02512	Cis-reg;	Pyrrolysine insertion sequence transposase 1
RF02513	Cis-reg;	Pyrrolysine insertion sequence transposase 2
RF02514	Gene; sRNA;	5' ureB small RNA
RF02656	Gene; sRNA;	Sense overlapping transcript RNA 0042 (sot)
RF02657	Gene; sRNA;	Sense overlapping transcript RNA 2652 (sot)
RF02792	Gene; antisense;	Archaeal Small RNA 162
RF02794	Gene; snRNA; snoRNA; HACA-box;	Pab19 RNA
RF02795	Gene; snRNA; snoRNA; HACA-box;	Pab91 RNA
RF02796	Gene; snRNA; snoRNA; HACA-box;	Pab160 RNA
RF02800	Gene; sRNA;	Rickettsia sRNA47
RF02801	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 201
RF02802	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 204
RF02803	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 205
RF02804	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 206
RF02805	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 207
RF02806	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 208
RF02807	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 209
RF02808	Gene; snRNA; snoRNA; HACA-box;	Pyrobaculum sRNA 210
RF02814	Gene; sRNA;	Sulfolobus sRNA133
RF02820	Gene; antisense;	Vibrio RNA AS9
RF02905	Gene; sRNA;	Archaeal Small RNA 41
RF02906	Gene; sRNA;	Archaeal Small RNA 154
RF02914	Cis-reg;	DUF805b RNA
RF02921	Gene; sRNA;	RT-14 RNA
RF02984	Gene; sRNA;	DUF3800-X RNA
RF02996	Gene; sRNA;	int-alpA RNA
RF03001	Cis-reg;	leuA-Halobacteria RNA
RF03006	Gene; sRNA;	M23 RNA
RF03019	Gene; sRNA;	RT-16 RNA
RF03094	Gene; sRNA;	LAGLIDADG-2 RNA
