pymatgen (2022.11.7+dfsg1-11+deb12u2) bookworm; urgency=medium

  * Team upload.
  * d/patches:
    - CVE-2022-42964: Import and backport patch (Closes: #1024017)
      (Fix exponential ReDoS in GaussianInput.from_string method)

 -- Matheus Polkorny <mpolkorny@gmail.com>  Wed, 27 May 2026 08:45:16 -0300

pymatgen (2022.11.7+dfsg1-11+deb12u1) bookworm-security; urgency=medium

  * CVE-2024-23346 (Closes: #1064514)

 -- Moritz Mühlenhoff <jmm@debian.org>  Wed, 28 Aug 2024 15:15:13 +0200

pymatgen (2022.11.7+dfsg1-11) unstable; urgency=medium

  * debian/tests: run tests verbose to help identify tests that timeout
  * debian/tests: skip test_rotor_search_rrs (not test_localopt) from
    test_babel.py. "7th item" for #1031705 was incorrectly identified.

 -- Drew Parsons <dparsons@debian.org>  Sun, 26 Feb 2023 14:09:26 +0100

pymatgen (2022.11.7+dfsg1-10) unstable; urgency=medium

  * debian/tests: skip test_localopt from io test_babel.py, which
    intermittently times out. Closes: #1031705.

 -- Drew Parsons <dparsons@debian.org>  Sat, 25 Feb 2023 14:07:46 +0100

pymatgen (2022.11.7+dfsg1-9) unstable; urgency=medium

  * hurd-i386: skip failing build tests, test_pca
    test_get_info_cohps_to_neighbors test_get_parchg
    test_as_dict_from_dict test_ir_spectra
  * clean .c files generated from .pyx

 -- Drew Parsons <dparsons@debian.org>  Tue, 14 Feb 2023 00:33:10 +0100

pymatgen (2022.11.7+dfsg1-8) unstable; urgency=medium

  * debian patch stress_fp_approx_2839.patch fixes floating point
    comparison in test_stress.py for hurd-i386.
    See https://github.com/materialsproject/pymatgen/issues/2839
  * resolve pymatgen/mp_api circular dependency by removing
    python3-mp-api from Build-Depends and set
    python3-pymatgen Recommends: python3-mp-api instead of Depends:
    Skip build-time test_matproj.py (mp_api is only used by
    ext/matproj.py) and add Depends: python3-mp-api to debian/tests.
    In practice the matproj tests are skipped anyway since an MP API
    key is not available.
    - reinstate debian patch no_mp_api.patch to enable tests to run
      without mp_api

 -- Drew Parsons <dparsons@debian.org>  Mon, 13 Feb 2023 11:49:16 +0100

pymatgen (2022.11.7+dfsg1-7) unstable; urgency=medium

  * skip failing tests
    - s390x, ppc64: test__generate_nbmax test_evaluate_wavefunc
      test_fft_mesh_advanced test_fft_mesh_basic test_get_parchg
      test_n2_45210 test_n2_spin test_standard test_write_unks
      test_consistency (tests from io/vasp)
    - hurd-i386: skip all plot tests (matplotlib on hurd fails with
      _tkinter.TclError: no display name and no $DISPLAY environment
      variable

 -- Drew Parsons <dparsons@debian.org>  Wed, 08 Feb 2023 17:07:44 +0100

pymatgen (2022.11.7+dfsg1-6) unstable; urgency=medium

  * skip failing tests
    - s390x, ppc64: skip test__generate_G_points
    - hurd-i386: test_plot
  * debian/tests: ease maintenance by only skipping run-time tests on
    debci-tested arches (release arches and riscv64)

 -- Drew Parsons <dparsons@debian.org>  Wed, 08 Feb 2023 11:54:37 +0100

pymatgen (2022.11.7+dfsg1-5) unstable; urgency=medium

  * skip failing build tests
    - s390x, ppc64: test_optics
    - hurd-i386: test_pca

 -- Drew Parsons <dparsons@debian.org>  Wed, 08 Feb 2023 09:32:07 +0100

pymatgen (2022.11.7+dfsg1-4) unstable; urgency=medium

  * skip failing tests
    - mips64el: test_pca
    - s390x, ppc64: test_from_file
    - hurd-i386: test_get_plot

 -- Drew Parsons <dparsons@debian.org>  Tue, 07 Feb 2023 11:35:19 +0100

pymatgen (2022.11.7+dfsg1-3) unstable; urgency=medium

  * skip failing tests
    - arm64, i386, ppc64el, riscv64: test_get_parchg
    - s390x, ppc64: test_spillage_from_vasprun
    - hurd-i386: test_structure_environments
  * Build-Depends:  python3-mp-api
    - drop debian/patches/no_mp_api.patch

 -- Drew Parsons <dparsons@debian.org>  Mon, 06 Feb 2023 20:01:01 +0100

pymatgen (2022.11.7+dfsg1-2) unstable; urgency=medium

  * add debian patches
    - numpy_1.24.patch replaces deprecated (dropped) numpy.int with int
      and np.complex with complex
    - no_mp_api.patch uses MPResterLegacy if mp_api is not available
    - test_piezo_4538090.patch applies upstream commit 4538090
    - test_piezo_sensitivity_99b5cd7.patch applies upstream commit
      99b5cd7 to fix test_piezo_sensitivity
    - openbabel_OBAlign.patch fixes path to openbabel
    - test_lammps_sorted.patch fixes api accessing properties of
      lammps data objects
    - skip_nonfree_testfile.patch skips test_CifParserSpringerPauling,
      since non-free PF*.cif test files are not available
    - fix_phonon_bandstructures_7ba41e0.patch applies upstream commit
      7ba41e0 to fix handling of data structures in phonon
      bandstructures
  * pymatgen-test-files is now available, activate build-time and
    run-time tests
  * io/qchem is partly broken, skip failing tests:
    - input: test_from_multi_jobs_file test_from_string
      test_read_molecule test_read_nbo test_read_negative
      test_read_plots test_read_write_nbo7
    - output: test_all test_custom_smd_write
    - test_sets.py (all)
  * skip io tests that fail in chroot:
    test_CifWriter test_read_write test_init test_get_site_symmetries
  * Standards-Version: 4.6.2
  * use dh-sequences for python3 and sphinxdoc and the make doc build
    conditional (arch-indep build only)

 -- Drew Parsons <dparsons@debian.org>  Mon, 06 Feb 2023 01:22:16 +0100

pymatgen (2022.11.7+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - applies/deprecates debian patches test_h5py_byte_string.patch
      and test_no_internet.patch
    - Build-Depends: cython3, python3-spglib (>= 2.0.2~)
    - Build-Depends: pybuild-plugin-pyproject to use pyproject.toml
    - supports python 3.11 (Closes: #1024075)
  * drop debian patch skip_tests.patch (tests now fixed)
  * mark python-pymatgen-doc as Multi-Arch: foreign
  * Standards-Version: 4.6.1

 -- Drew Parsons <dparsons@debian.org>  Sat, 26 Nov 2022 00:25:13 +0100

pymatgen (2022.0.17+dfsg1-1) unstable; urgency=medium

  * New upstream release
    - fixes BSPlotterProjectedTest tests. Closes: #1000419.
  * exclude test_files in debian/copyright
    (they are now included in the new pymatgen-test-files package)
    - drop debian patch run_test_local_path.patch
  * skip tests until the pymatgen-test-file package becomes available
  * debian patch docs_mathjax_local.patch configures docs to use local
    mathjax (see Bug#989649)
  * debian/copyright: list detailed authors for
    docs_rst/_static/team-map.html (a blend of functions from different
    projects, all MIT licensed)

 -- Drew Parsons <dparsons@debian.org>  Tue, 14 Dec 2021 18:28:48 +0100

pymatgen (2022.0.16+dfsg1-1) unstable; urgency=medium

  * New upstream release.
  * Build-Depends: python3-phonopy. Closes: 1000432.
  * update debian patch skip_tests.patch to skip
    BSPlotterProjectedTest in electronic_structure test_plotter.py
    (incompatible with matplotlib 3.5). See Bug#1000419.

 -- Drew Parsons <dparsons@debian.org>  Wed, 24 Nov 2021 15:02:21 +0100

pymatgen (2022.0.14+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - applies debian patches install_data_files.patch and
      use_TEST_FILES_DIR.patch
  * update versioned Build-Depends: python3-numpy (>= 1.20.1~),
      python3-monty (>= 3.0.2~),
      python3-matplotlib (>= 1.5~),
      python3-palettable (>= 3.1.1~),
      python3-spglib (>= 1.9.9.44~),
      python3-networkx (>= 2.2~),
      python3-plotly (>= 4.5.0~),
      python3-ase (>= 3.3~)
  * debian/rules: remove deprecated replacement of mathjax url
  * only build docs in arch-independent build
  * Build-Depends: python3-openbabel (optional supported package)
    python3-pymatgen Recommends: python3-openbabel

 -- Drew Parsons <dparsons@debian.org>  Thu, 14 Oct 2021 01:15:42 +0200

pymatgen (2022.0.11+dfsg1-1) unstable; urgency=medium

  * New upstream release.
    - applies debian patches drop_feff_input_generation_f67cf7a.patch,
      skip_phonopy_tests.patch, test_filename_MoS.patch
    - docs no longer use badge-analysis.svg, badge-main.svg
    - docs use official ORCID-iD 32x32 logo (orcid.svg),
      licensed under Creative Commons CC0 1.0 Universal licence
  * Standards-Version: 4.6.0
  * use triple-slash for mathjax reference in docs
  * run build-time tests using pytest-3, with PMG_TEST_FILES_DIR
    pointing at toplevel test_files
  * update debian patch test_no_internet.patch to catch Exceptions
    (ConnectionError) if internet is not available
  * add debian patches
    - use_TEST_FILES_DIR.patch fixes tests to use TEST_FILES_DIR
    - install_data_files.patch installs missing data files
      (analysis/solar/am1.5G.dat, io/lammps/templates/md.txt)
    - skip_tests.patch skips tests (or code) that inappropriately
      triggers failures
  * image files in debian/images have been created by Drew Parsons
    using inkscape to serve in place of github image files for the
    purpose of preserving privacy in locally installed documentation
    Licenced under the MIT licence used for the rest of the debian dir
    (and the pymatgen project)
  * add debian/tests (autopkgtest)
  * run tests strictly with pytest-3. "python3.9 -m pytest" fails.
  * update debian patch test_no_internet.patch to test connection to
    aiida.materialscloud.org in test_optimade.py

 -- Drew Parsons <dparsons@debian.org>  Mon, 23 Aug 2021 09:59:25 +0200

pymatgen (2020.12.18+dfsg2-1) unstable; urgency=medium

  * Initial release (Closes: #962268)
  * copy test input files for running tests
  * add debian patches:
    - test_filename_MoS.patch identifies test file as
      MoS2_single.pdf not MOS2_single.pdf
    - skip_failing_WulffShapeTest.patch skips test_get_plotly to avoid
      index error in WulffShapeTest (test_wulff.py), see
      https://github.com/materialsproject/pymatgen/issues/2023
    - test_no_internet.patch skips tests requiring an internet
      connection (forbidden by Debian policy for privacy reasons)
    - skip_phonopy_tests.patch skips TestPhonopyFromForceConstants if
      phonopy is not present
    - test_h5py_byte_string.patch treats h5py string data as byte
      arrays (for h5py v3)
    - docs_no_local_python.patch removes local source dirs from python
      system path when building docs
    - drop_feff_input_generation_f67cf7a.patch applies upstream commit
      f67cf7a to drop the feff_input_generation executable script
    - run_test_local_path.patch accesses Vasp test file using full path
      to enable the test to be launched from other directories
    - test_lammps_regex_path.patch escapes '+' in path used to find
      lammps test files (e.g. with DFSG version "+dfsg2" in path)
  * man pages generated using help2man
  * remote image files used in docs have been predownloaded into
    debian/images and installed in html/_images to avoid privacy
    breaches in online documentation.

 -- Drew Parsons <dparsons@debian.org>  Tue, 29 Dec 2020 21:17:19 +1100
