python-pbcore (2.1.2+dfsg-13) unstable; urgency=medium

  * Team upload.
  * Enable nocheck build profile job in Salsa CI.
  * d/rules: Refactor the way tests are ignored and excluded from the package.
    Fixes FTBFS issue when using the nocheck build profile. Closes: #1103324.

 -- Santiago Vila <sanvila@debian.org>  Tue, 30 Sep 2025 02:30:00 +0200

python-pbcore (2.1.2+dfsg-12) unstable; urgency=medium

  * Team Upload
  * Drop "python3-uritools" backport(ish) from build-dependencies

 -- Alexandre Detiste <tchet@debian.org>  Sun, 07 Sep 2025 00:03:01 +0200

python-pbcore (2.1.2+dfsg-11) unstable; urgency=medium

  [ Andreas Tille ]
  * d/p/remove-pkg-resources.patch: replace the usages of pkg_resources
    with importlib.resources for Python 3.13 compatibility (Thanks for the
    patch to Vladimir Petko)
    Closes: #1093230 (LP: #2095040).
  * d/t/control: add smoke test.
  * Make the build reproducible (Thanks for the patch to Chris Lamb)
    Closes: #1089095

  [ Étienne Mollier ]
  * numpy2.patch: new: workaround overflow errors with numpy 2.
    (Closes: #1095090)
  * d/control: declare compliance to standards version 4.7.2.

 -- Étienne Mollier <emollier@debian.org>  Thu, 27 Feb 2025 22:38:34 +0100

python-pbcore (2.1.2+dfsg-10) unstable; urgency=medium

  * Remove intersphinx
    Closes: #1090155
  * d/rules: Fix removal of test remainings

 -- Andreas Tille <tille@debian.org>  Mon, 16 Dec 2024 18:22:11 +0100

python-pbcore (2.1.2+dfsg-9) unstable; urgency=medium

  * d/control: remove dependency on deprecated python3-pkg-resources.
    (Closes: #1083675)
  * d/patches/*: normalize dep3 headers.
  * d/salsa-ci.yml: disable i386 build.
    i386 build failure is not fatal on arch-all packages.

 -- Étienne Mollier <emollier@debian.org>  Sun, 10 Nov 2024 15:33:33 +0100

python-pbcore (2.1.2+dfsg-8) unstable; urgency=medium

  * d/rules: remove nudge to use setuptools test. (Closes: #1080396)
  * d/rules; remove unknown files in Python module directory.
  * d/control: declare compliance to standards version 4.7.0.

 -- Étienne Mollier <emollier@debian.org>  Tue, 03 Sep 2024 21:57:31 +0200

python-pbcore (2.1.2+dfsg-7) unstable; urgency=medium

  * Team upload.
  * d/tests/control: restrict tests to 64-bit architectures.

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 22 Mar 2024 18:05:46 +0100

python-pbcore (2.1.2+dfsg-6) unstable; urgency=medium

  * Team upload.
  * d/rules: combine the two dh_auto_clean overrides into one
             and use d/clean to simplify that.
  * d/control: add dh-sequence dependencies for the addons.

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 22 Mar 2024 17:59:15 +0100

python-pbcore (2.1.2+dfsg-5) unstable; urgency=medium

  * d/control: bring back support for all python3 versions.
  * d/NEWS: remove; affected version not part of maintained releases.
  * d/copyright: update copyright years.
  * d/control: depend on architecture all only python3 package.
  * d/rules: remove empty directory flagged by lintian.

 -- Étienne Mollier <emollier@debian.org>  Sat, 07 Jan 2023 15:47:39 +0100

python-pbcore (2.1.2+dfsg-4) unstable; urgency=medium

  * Standards-Version: 4.6.2 (routine-update)
  * Fix AttributeError: module 'numpy' has no attribute 'float'.
    Closes: #1027211

 -- Andreas Tille <tille@debian.org>  Thu, 29 Dec 2022 20:01:16 +0100

python-pbcore (2.1.2+dfsg-3) unstable; urgency=medium

  * enable-build-time-testing.patch: remove; cease enforcing nostests.
  * d/control: replace nose by pytest. (Closes: #1018551)
  * Standards-Version: 4.6.1 (routine-update)
  * d/control: add myself to uploaders.

 -- Étienne Mollier <emollier@debian.org>  Sat, 03 Dec 2022 20:33:13 +0100

python-pbcore (2.1.2+dfsg-2) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)

 -- Andreas Tille <tille@debian.org>  Sat, 29 Jan 2022 08:10:54 +0100

python-pbcore (2.1.2+dfsg-1) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * Team upload.
  * New upstream version
  * Remove trailing whitespace in debian/rules (routine-update)

  [ Andreas Tille ]
  * Attempt to enhance creation of documentation to address bug #919052
  * abandon pyxb, use xmlschema for validation if installed

  [ Nilesh Patra ]
  * Fix creation of docs
    Closes: #919052

 -- Andreas Tille <tille@debian.org>  Thu, 23 Dec 2021 17:14:59 +0100

python-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Trim trailing whitespace (routine-update).
  * d/rules: allow for repeated builds by fixing clean

 -- Steffen Moeller <moeller@debian.org>  Tue, 05 May 2020 17:43:06 +0200

python-pbcore (1.7.1+git20200313.41ba394+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Rules-Requires-Root: no (routine-update)
  * Cleaning generated doc/*.rst files
  * d/u/metadata: Added ref to bioconda

 -- Steffen Moeller <moeller@debian.org>  Sat, 21 Mar 2020 19:54:46 +0100

python-pbcore (1.7.1+git20200206.d66cbbf+dfsg-1) unstable; urgency=medium

  [ Gianfranco Costamagna ]
  * Drop pyxb also from test depends (Closes: #950336)

  [ Andreas Tille ]
  * New upstream version
  * Add salsa-ci file (routine-update)

 -- Andreas Tille <tille@debian.org>  Tue, 25 Feb 2020 09:06:14 +0100

python-pbcore (1.7.1+git20200129.c55621e+dfsg-1) unstable; urgency=medium

  * Remove python3-pyxb from Build-Depends
    Closes: #950336
  * New upstream version
  * Standards-Version: 4.5.0 (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Andreas Tille <tille@debian.org>  Fri, 31 Jan 2020 16:34:17 +0100

python-pbcore (1.7.1+git20191121.7947eb7+dfsg-3) unstable; urgency=medium

  * Build-Depends: s/pylint3/pylint/
    Closes: #946426

 -- Andreas Tille <tille@debian.org>  Mon, 09 Dec 2019 09:06:38 +0100

python-pbcore (1.7.1+git20191121.7947eb7+dfsg-2) unstable; urgency=medium

  * Re-upload for testing migration

 -- Andreas Tille <tille@debian.org>  Sat, 07 Dec 2019 09:37:21 +0100

python-pbcore (1.7.1+git20191121.7947eb7+dfsg-1) unstable; urgency=medium

  * Afif removed himself from Uploaders
  * Add myself to Uploaders
  * New upstream version Git checkout
    Drop Python2 support and switch to Python3
    Closes: #938009
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * (Build-)Depends: python3-biopython (>= 1.74)
  * Rewrite autopkgtest
  * Breaks/Provides/Replaces: python-pbcore (<= (1.7)

 -- Andreas Tille <tille@debian.org>  Thu, 05 Dec 2019 11:23:55 +0100

python-pbcore (1.6.5+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Team upload.
  * Recommends: python-h5py (its considered an "optional dependency")
  * Upstream is now tagging releases - adjust watch file
  * Standards-Version: 4.2.1
  * Secure URI in copyright format
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/changelog
  * Build-Depends: s/python-sphinx/python3-sphinx/

  [ Drew Parsons ]
  * add fix_numpy_1.16_9c065b7.patch applying upstream commit
    9c065b724 to fix dtypes for build against numpy 1.16.
    Closes: #918212, #917670.
  * Standards-Version: 4.3.0
  * debhelper compatibility level 12

 -- Drew Parsons <dparsons@debian.org>  Thu, 10 Jan 2019 11:13:59 +0100

python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-2) unstable; urgency=medium

  * Team upload
  * Add test Depends: python-h5py

 -- Graham Inggs <ginggs@debian.org>  Wed, 27 Jun 2018 13:06:45 +0000

python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-1) unstable; urgency=medium

  * Team upload

  [ Afif Elghraoui ]
  * New upstream version (git f3bcf3a)
  * Updated patches
  * Added tests dependency on python-coverage
  * d/control: use build profile declarations

  [ Andreas Tille ]
  * New upstream version
    Closes: #900485
  * Relax test constraint which is rather a rounding issue
  * d/watch: mode=git
  * cme fix dpkg-control
     - Point Vcs-fields to Salsa
     - Standards-Version: 4.1.4
     - Sequence of fields
     - Formatting
  * debhelper 11
  * remove outdated X-Python-Version
  * d/rules: Drop get-orig-source target

 -- Andreas Tille <tille@debian.org>  Tue, 26 Jun 2018 08:13:42 +0200

python-pbcore (1.2.11+dfsg-1) unstable; urgency=medium

  * New upstream release (git 32b6883 from 2016-09-19)
  * Update patches

 -- Afif Elghraoui <afif@debian.org>  Thu, 26 Jan 2017 00:23:02 -0800

python-pbcore (1.2.10+dfsg-1) unstable; urgency=medium

  * Imported Upstream version 1.2.10+dfsg
  * Drop patch applied upstream
  * Don't raise exception if pyxb version does not exactly match
    (Closes: #839346)
  * Bump Standards-Version to 3.9.8

 -- Afif Elghraoui <afif@debian.org>  Sun, 09 Oct 2016 11:10:59 -0700

python-pbcore (1.2.9+dfsg-1) unstable; urgency=medium

  * Imported Upstream version 1.2.9+dfsg
  * Refresh patches
  * Remove handling for pbdataset script
  * Add new tests dependency on python-pyxb
  * Add NEWS file to warn users about the missing pbdataset script
  * Make corrections to the pbopen manpage

 -- Afif Elghraoui <afif@debian.org>  Mon, 11 Apr 2016 22:58:38 -0700

python-pbcore (1.2.7+dfsg-2) unstable; urgency=medium

  * Fix compatibility with pysam 0.9.0
  * Bump standards version
  * Use https for VCS URLs

 -- Afif Elghraoui <afif@debian.org>  Thu, 10 Mar 2016 22:46:31 -0800

python-pbcore (1.2.7+dfsg-1) unstable; urgency=medium

  * Revert "Set watch file to point to pypi rather than github"
  * Imported Upstream version 1.2.7+dfsg
  * Drop patch applied upstream
  * Refresh patches

 -- Afif Elghraoui <afif@ghraoui.name>  Sun, 13 Dec 2015 17:18:26 -0800

python-pbcore (1.2.6+dfsg-1) unstable; urgency=medium

  * Set watch file to point to pypi rather than github
  * Imported Upstream version 1.2.6+dfsg
  * Refresh patches
  * Fix compatibility with pysam 0.8.4 (Closes: #805687)
  * Add license statement for a file added in-between releases

 -- Afif Elghraoui <afif@ghraoui.name>  Fri, 27 Nov 2015 12:19:10 -0800

python-pbcore (1.2.4+dfsg-1) unstable; urgency=medium

  * Fix watch file after dropping the dfsg counting.
  * Imported Upstream version 1.2.4+dfsg
  * Drop patch to skip integration tests at build time (applied upstream)
  * Drop rename-dataset.py patch in favor of build-time substitution

 -- Afif Elghraoui <afif@ghraoui.name>  Mon, 26 Oct 2015 21:56:40 -0700

python-pbcore (1.2.3+dfsg-1) unstable; urgency=medium

  * Imported Upstream version 1.2.3+dfsg
  * Add patch to skip tests if the necessary scripts can't be found
  * Install scripts to /usr/bin, but give them sensible names
  * Add dependency on python-pkg-resources for python-pbcore
  * Add manpage stubs directing users to richer documentation sources

 -- Afif Elghraoui <afif@ghraoui.name>  Sun, 20 Sep 2015 01:18:26 -0700

python-pbcore (1.2.2+dfsg1-1) unstable; urgency=medium

  * Imported Upstream version 1.2.1+dfsg1
  * Install upstream-provided convenience scripts
  * Refresh patches
  * Install upstream changelog and readme in main package (not doc package)
  * Enable build-time testing
  * Configure autopkgtests
  * Drop nonfunctional Python3 package and merge data package with main one

 -- Afif Elghraoui <afif@ghraoui.name>  Mon, 03 Aug 2015 23:43:39 -0700

python-pbcore (1.0.0-1) experimental; urgency=low

  * Initial release (Closes: #787981)
  * Add material for autopkgtest
  * Use packaged javascript libraries for HTML documentation where available
  * Use dh pybuild rather than the upstream-provided Makefile
  * Use default documentation theme rather than upstream's with corporate logo
  * Provide python3 package
  * Prepare python-pbcore-data package
  * Prepare documentation package
  * Add autopkgtest for python3 package
  * Update uscan calls to append suffix to package name for next release

 -- Afif Elghraoui <afif@ghraoui.name>  Sat, 06 Jun 2015 23:35:12 -0700
