python-pybedtools (0.10.0-4) unstable; urgency=medium

  * d/control: re-instate using pybuild for the autopkgtests
  * d/control: tidy build requirements, use the nodoc and nocheck build
    profiles
  * Modernized the build using pybuild-plugin-pyproject
  * Standards-Version: 4.7.0 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 26 Dec 2024 16:35:35 -0800

python-pybedtools (0.10.0-3) unstable; urgency=medium

  * Team Upload.
  * d/patches/fix-doctest-imports.py: Add patch from upstream to use
    explicit namespace in docstrings of long_range_interaction file (Closes:
    #1090283).

 -- Emmanuel Arias <eamanu@debian.org>  Tue, 24 Dec 2024 19:24:47 -0300

python-pybedtools (0.10.0-2) unstable; urgency=medium

  * Team upload.
  * d/patches/416.patch: Apply patch from upstream to fix Python3.13 issues in
    build (Closes: #1081673).

 -- Emmanuel Arias <eamanu@debian.org>  Thu, 14 Nov 2024 22:58:17 -0300

python-pybedtools (0.10.0-1) unstable; urgency=medium

  * New upstream version. Closes: #1068960
  * Refreshed patches.

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 03 May 2024 17:43:13 +0200

python-pybedtools (0.9.1-1) unstable; urgency=medium

  [ Lance Lin ]
  * Team upload.
  * New upstream version
  * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild
  * d/rules:
   - Enable build tests
   - Deselect test_chromsizes test, needs internet
   - Build docs with sphinx-build for Sphinx 7.1 (Closes: #1042651)
   - Remove autogenerated files from build
  * d/python-pybedtools-doc.docs: Change sphinx docs location
  * d/source/options: Ignore modified source files (Closes: #1048006)
  * d/patches/yaml_safe_load.patch: Modify safe_load for full_load where needed

  [ Andreas Tille ]
  * Remove unknown files in python module directory
  * Testsuite: autopkgtest-pkg-python (routine-update)
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Remove field Testsuite on binary package python-pybedtools-doc that
    duplicates source.

 -- Lance Lin <lq27267@gmail.com>  Fri, 27 Oct 2023 19:35:26 +0700

python-pybedtools (0.9.0-4) unstable; urgency=medium

  * Team upload.
  * d/control: restore python3 all versions support now that pysam supports
    python3.11.
    Thanks to Andreas Beckmann for the reminder. (Closes: #1025116)
  * d/copyright: update copyright year.
  * d/control: declare compliance to standards version 4.6.2.

 -- Étienne Mollier <emollier@debian.org>  Mon, 02 Jan 2023 21:49:24 +0100

python-pybedtools (0.9.0-3) unstable; urgency=medium

  * Team Upload.
  * d/watch: repair watch file from github changes.
  * d/control: stick to python3.10. (Closes: #1025116)

 -- Étienne Mollier <emollier@debian.org>  Fri, 02 Dec 2022 12:19:36 +0100

python-pybedtools (0.9.0-2) unstable; urgency=medium

  * Team Upload.
  * Add patch to replace yaml.load calls with
    yaml.safe_load (Closes: #1022076)
  * Change B-D from python3-nose to python3-pytest (Closes: #1018560)
  * Bump Standards-Version to 4.6.1 (no changes needed)

 -- Nilesh Patra <nilesh@debian.org>  Sun, 23 Oct 2022 16:24:34 +0530

python-pybedtools (0.9.0-1) unstable; urgency=medium

  * Team upload.
  * Enable uscan downloading sensible file name

 -- Andreas Tille <tille@debian.org>  Thu, 17 Feb 2022 15:21:29 +0100

python-pybedtools (0.8.2-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * watch file standard 4 (routine-update)
  * Fix installation of examples
  * No need to fix permissions any more

 -- Andreas Tille <tille@debian.org>  Mon, 18 Oct 2021 14:08:37 +0200

python-pybedtools (0.8.0-6) UNRELEASED; urgency=medium

  * Team upload.
  * Fix watchfile to detect new versions on github

 -- Andreas Tille <tille@debian.org>  Mon, 18 Oct 2021 13:33:21 +0200

python-pybedtools (0.8.0-5) unstable; urgency=medium

  * Fix binary-all build
    Closes: #960746

 -- Andreas Tille <tille@debian.org>  Sun, 17 May 2020 07:51:43 +0200

python-pybedtools (0.8.0-4) unstable; urgency=medium

  * Team upload.
  * Rebuild against available architectures
    Closes: #960411
  * Standards-Version: 4.5.0 (routine-update)
  * Remove trailing whitespace in debian/rules (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Add missing shebang lines in scripts
  * Move example script to examples
  * Fix permission of script

 -- Andreas Tille <tille@debian.org>  Wed, 13 May 2020 09:14:53 +0200

python-pybedtools (0.8.0-3) unstable; urgency=medium

  * Mark the -doc package Multi-Arch: foreign
  * debhelper-compat 12
  * Testsuite: autopkgtest-pkg-python
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/control
  * Set upstream metadata fields: Repository.
  * Remove obsolete fields Name from debian/upstream/metadata.
  * -doc: add ${sphinxdoc:Built-Using}

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 14 Nov 2019 13:16:33 +0100

python-pybedtools (0.8.0-2) unstable; urgency=medium

  * Improved parsing of version of bedtool binary
  * Standards-Version: 4.3.0

 -- Steffen Moeller <moeller@debian.org>  Fri, 02 Aug 2019 16:15:52 +0200

python-pybedtools (0.8.0-1) unstable; urgency=medium

  * New upstream version.

  * d/control:
    - Standards-Version: 4.3.0
    - No Python2 packages
    - Vcs links adapted for new home on salsa.d.o

  * d/copyright
    - adjusted paths for LGPL 2.1 files
    - added notion of GPL-2 (not later) files, credits for spotting
      those go to Thorsten Alteholz
      Created issue https://github.com/daler/pybedtools/issues/271
      proposing to homogenize that licensing.

 -- Steffen Moeller <moeller@debian.org>  Sat, 19 Jan 2019 15:41:02 +0100

python-pybedtools (0.7.10-2.1) REMOVED; urgency=medium

  * Removed from unstable and testing, see
    https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894299

 -- Steffen Moeller <moeller@debian.org>  Wed, 13 Jun 2018 22:40:23 +0200

python-pybedtools (0.7.10-2) unstable; urgency=medium

  * Team upload
  * Add back test_issue_178 after upstream provided a patch

 -- Andreas Tille <tille@debian.org>  Thu, 09 Nov 2017 12:01:51 +0100

python-pybedtools (0.7.10-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Build-Depends: python3-all-dev (Thanks for the hint to Adrian Bunk
    <bunk@debian.org>)
    Closes: #868927
  * Standards-Version: 4.1.1 (no changes needed)
  * do not uselessly parse d/changelog
  * hardening
  * Exclude test test_issue_178 since it fails for strange reasons (to be
    clarified with upstream)

 -- Andreas Tille <tille@debian.org>  Wed, 08 Nov 2017 09:00:50 +0100

python-pybedtools (0.7.8-1) unstable; urgency=medium

  * Initial release. (Closes: #851358)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 14 Jan 2017 01:51:01 -0800
