RUN_TIPP_TOOL.PY(1)

NAME
run_tipp_tool.py - helper tool to convert a classification file into a profile

DESCRIPTION
usage: run_tipp_tool.py [-h] [-g GENE] -a ACTION [-o OUTPUT] [-p PREFIX]

    [-i INPUT] [-t THRESHOLD]

Performs various tools for TIPP.

  optional arguments:

-h, --help
    show this help message and exit

-g GENE, --gene GENE
    use GENE's reference package

-a ACTION, --action ACTION
    Run ACTION

-o OUTPUT, --output OUTPUT
    OUTPUT directory

-p PREFIX, --prefix PREFIX
    PREFIX

-i INPUT, --input INPUT
    INPUT destination

-t THRESHOLD, --threshold THRESHOLD
    threshold for classification

    [-i INPUT] [-t THRESHOLD]

SEE ALSO
run_tipp.py(1)