REQUIREMENTS:

1. 16S rRNA database from arb-silva.de:
Download from ftp://ftp.arb-silva.de/release_108/Exports/SSURef_108_NR_tax_silva_v2.fasta.tgz

2. Bowtie
Download from http://bowtie-bio.sourceforge.net


PREPROCESSING:

 ./preprocessing.sh SSURef_108_NR_tax_silva_v2.fasta


USAGE:

 ./taxonomy.sh reads.fastq [threads=1]


FAQ:

 Ask Kolya.
