project_name        ECOLI_IS220_QUAKE_100K_SAVES
output_dir          ./spades_output/ECOLI_IS220_QUAKE_100K_SAVES
max_threads         4
developer_mode      true
compilation_dir     ./teamcity_precompiled/ECOLI_IS220_QUAKE_100K_SAVES

; This section describes the input dataset.
dataset
{
    paired_reads             $cfg/../../../data/input/E.coli/is220/cropped/s_6.first100000_1.fastq.gz $cfg/../../../data/input/E.coli/is220/cropped/s_6.first100000_2.fastq.gz
    ; single_reads             $cfg/../../../data/input/E.coli/is220/s_6_1.cor_single.fastq.gz $cfg/../../../data/input/E.coli/is220/s_6_2.cor_single.fastq.gz
    single_cell              false
}

assembly
{
    iterative_K         55
    gap_closer          true
}
