Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: https://github.com/ncbi/sra-tools/
Files-Excluded: ngs/ngs-sdk/win
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Upstream-Contact: sra-tools@ncbi.nlm.nih.gov

Files: *
Copyright: none claimed
License: public-domain
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              National Center for Biotechnology Information
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 This software/database is a "United States Government Work" under the
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 Although all reasonable efforts have been taken to ensure the accuracy
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 Please cite the author in any work or product based on this material.

Files: tools/loaders/fastq-loader/fastq-tokens.h
       tools/loaders/fastq-loader/zz_fastq-grammar.?
Copyright: 1984, 1989-1990, 2000-2015, 2018-2020 Free Software Foundation, Inc.
License: GPL-3+

Files: tools/loaders/sharq/CLI11.hpp
Copyright: 2017-2020 University of Cincinnati
           (developed by Henry Schreiner under NSF AWARD 1414736)
License: BSD-3-clause-CLI11
 Redistribution and use in source and binary forms of CLI11, with or without
 modification, are permitted provided that the following conditions are met:
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 1. Redistributions of source code must retain the above copyright notice, this
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 2. Redistributions in binary form must reproduce the above copyright notice,
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 3. Neither the name of the copyright holder nor the names of its contributors
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 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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Files: libs/inc/bm/*
Copyright: 2002-2022 Anatoliy Kuznetsov (anatoliy_kuznetsov at yahoo.com)
License: Apache-2
   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at
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       http://www.apache.org/licenses/LICENSE-2.0
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   See the License for the specific language governing permissions and
   limitations under the License.
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   For more information please visit:  http://bitmagic.io
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 On Debian systems you can find a copy of the Apache License, version
 2.0, at /usr/share/common-licenses/Apache-2.0.

Files: tools/loaders/sharq/json.hpp
Copyright: 2008-2009 Bjoern Hoehrmann <bjoern@hoehrmann.de>
           2009 Florian Loitsch
           2013-2021 Niels Lohmann <http://nlohmann.me>
License: Expat

Files: libs/inc/spdlog/*
Copyright: 2015-2021, Gabi Melman & spdlog contributors.
License: Expat

Files: ngs/ngs-sdk/language/java/jni*.h ngs/ncbi/ngs-jni/jni*.h
Copyright: 1996, Netscape Communications Corporation
           2006, Oracle and/or its affiliates
License: GPL-2
 This code is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License version 2 only, as
 published by the Free Software Foundation.  Oracle designates this
 particular file as subject to the "Classpath" exception as provided
 by Oracle in the LICENSE file that accompanied this code.
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 This code is distributed in the hope that it will be useful, but WITHOUT
 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
 version 2 for more details (a copy is included in the LICENSE file that
 accompanied this code).
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 You should have received a copy of the GNU General Public License
 along with this package; if not, see https://www.gnu.org/licenses/.
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 Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA
 or visit www.oracle.com if you need additional information or have any
 questions.
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 We used part of Netscape's Java Runtime Interface (JRI) as the starting
 point of our design and implementation.

Files: tools/loaders/sharq/hash/*
Copyright: 2017-2020 Mike Tzou (Chocobo1)
License: GPL-3+

Files: tools/loaders/sharq/hash/gsl/*
Copyright: 2015 Microsoft Corporation
License: Expat

Files: debian/tests/test-data/test-data.tar.gz
Copyright: 1996-2018 NCBI
License: unrestricted
 Databases of molecular data on the NCBI Web site include such examples as
 nucleotide sequences (GenBank), protein sequences, macromolecular
 structures, molecular variation, gene expression, and mapping data. They
 are designed to provide and encourage access within the scientific
 community to sources of current and comprehensive information. Therefore,
 NCBI itself places no restrictions on the use or distribution of the data
 contained therein. Nor do we accept data when the submitter has requested
 restrictions on reuse or redistribution.
Comment:
 The test data files contained in the archive are a data set prepared from
 original SRAs with accession numbers SRR6650398, SRR2042184 and SRR7032226.

License: Expat
 Permission is hereby granted, free of charge, to any person obtaining a
 copy of this software and associated documentation files (the "Software"),
 to deal in the Software without restriction, including without limitation
 the rights to use, copy, modify, merge, publish, distribute, sublicense,
 and/or sell copies of the Software, and to permit persons to whom the
 Software is furnished to do so, subject to the following conditions:
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 The above copyright notice and this permission notice shall be included in
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 FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 DEALINGS IN THE SOFTWARE.

License: GPL-3+
   This program is free software: you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.
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   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 .
 On Debian systems you can find a copy of the  GNU General Public
 License version 3 at /usr/share/common-licenses/GPL-3.
