Upstream provides binary files without sources for:

* src/tests/chimeric_read_errors.sam 

These have been converted to corresponding text (.sam) files with the commands:
* samtools view -h -o chimeric_read.sam chimeric_read.bam

And the corresponding *.sam files are added to: debian/missing-sources

They can be generated back with the following commands:
*	cat debian/missing-sources/chimeric_read.sam| samtools view -Sb - > src/tests/chimeric_read.bam
*	samtools index src/tests/chimeric_read.bam src/tests/chimeric_read.bam.bai
*	cat src/tests/chimeric_read_errors.sam| samtools view -Sb - > src/tests/chimeric_read_errors.bam
*	samtools index src/tests/chimeric_read_errors.bam src/tests/chimeric_read_errors.bam.bai

The corresponding ".bam.bai" file is also being generated from the source(s) which is required during tests but not provided by upstream.
These commands are also being run in debian/rules since these binaries are needed for testing.

 -- Nilesh Patra <npatra974@gmail.com>

