AG
Fakult
KR
Kurtz
LVIF
Levenshtein
MB
NQ
Postfach
Technische
Trans
TransDNA
Universit
XBZ
YW
aA
allmax
bielefeld
cC
dbfile
enumi
fasta
fastaformat
gG
indexname
kurtz
largelcpvalues
lcp
lw
maxbranchdepth
mkvtree
mls
nformation
nodist
noevalue
nsywrkvbdhmNSYWRKVBDHM
numofdbsequences
numofquerysequences
numofsequences
prefixlength
queryfiles
seedsize
showdesc
tT
techfak
totallength
vmatch
Initially
Vtree
ababTree
lcptab
pt
stree
suftab
AGTGGCTACGGCGGCGGTGGCGGCGATGGAAGTAGACGGATGGTGGTAGGAATGAAAGGCTAGAAGCGGC
ATGRAYAMTCAAAAATGGAGTMTAGGTTTCATATCTCTCGCTTTTCTCTTCATCACTTCCTCTTCAGCTG
Arabidopsis
CAATCTGAATTTCAATTCCGCCGCTCGCCTTTTTCCTCTCCGCCTTTTCCGTCTCTCCGATCTGCTCCCG
CCGCCGACCTTGTGATGATTATAGCTCTGAAGGTCCATACAAGGATATAAAAAAAAAAAAAAAAA
EMBL
GGAGAAGTATGTGGATAAGAAATAACAAAAACTGAGGGGATCATGAAGTTCTTCGTTATATTATAGTTTT
GenBank
ORF
ORFs
Thaliana
allout
allunique
atEST
bac
basename
bck
bestall
bwt
dna
fna
ls
mgen
mpneu
pl
rw
seedlength
skp
smap
ssp
ssptab
suf
symbolmap
tis
CN
Gusfield
Gusfield's
VtableExample
bcktab
bwttab
destab
llvtab
maximality
prjtab
sdstab
skptab
tistab
createedge
createnode
CLatEST
Compaq
IRIX
IUB
Linux
Multiseq
SWISSPROT
Sparc
StoreMatch
Storelength
Virtualtree
Werror
Xdrop
Zhang
aactgcggaagctgcgactgtcctgacaagacccagtgcgtaaagaagggaaccagctaca
acaagaactcaaacacttcataactaaaacatcctttaangcctttnnaaaaactcaatca
acttgctgcccccaactaatgangcttctttaatcaaaatgtaatatgnntaaaagtttna
agttgatgtgggctcatctattgagctcatgtntctnttattactactctctagtatggtg
args
ave
aximal
cagctacaccttcgacatcgtcgagactcaggagagctacaaggaggccatgatcatggac
ccttcgacatcgtcgagactcaggagagctacaaggaggccatgatcatggacgttggtgc
cgaggagaacaacgcaaattgcaagtncaagtncggctcctcttgcagctgcgtnaactgc
ctcaaacacttcataactaaacatcctttaaagccttttcaaaaactcaatcatgtcaagc
dbcluster
dbmaskmatch
dbnomatch
ea
endian
exdrop
gcc
ggggtgatgtaatggggttnttaccccntcttcccntncccnttaaaaact
gttggtgccgaggagaacaacgcaaattgcaagtncaagtncggctcctcttgcagctgcg
hxdrop
ia
indel
indels
int
inux
iub
ja
jd
largeheading
ld
leastscore
multiseq
ne
nsertion
ois
oistab
pos
ptimal
qmaskmatch
qnomatch
querymultiseq
sel
selectmatch
selfun
sh
smallheading
storematch
tTuU
tcaactgcacttgctgccccaactaatgangcttctttaatcaaaatgtaatatgaataaa
tgatgtaatgggttatgacccttctttcccttccctataaaactnaaggancttgcaaggt
tgtcaagcaactncggaagctgcgactgtcctgacaagacccagtgcgtaaagaagggaac
tgtnggggctcatcctatttgagnctcatggtttctctttattactaccnctctngtaatg
tolower
toupper
vendian
virtualdef
virtualtree
vmatchselect
vmigrate
vseqinfo
addedge
addnode
cartesian
precompute
subpath
RMPM
br
minimality
GusfieldVST
Manber
Treeacaaacaca
Treeacaaacacaraw
VST
createempty
exactmatch
reportcombine
reputer
Aminoacids
Benno
Bioinformatics
Cieliebak
GASPVTCLNOBDQKZEMHFRYW
Mhz
Schwikowski
Swissprot
al
aminoacid
aminoacids
binsearch
callmkvtree
countfirstbranch
countleaf
ctl
des
emph
evalmass
fas
findmass
hamburg
lin
linsearch
llv
mahagoni
mas
massbck
massfile
masstab
maxmass
minmass
mkmasstab
mmap
prj
scm
sds
sprot
swissprot
vmbucket
vmctlook
zbh
AboutVmatch
Acknowledgements
Choudhuri
FY
Fakulty
IAG
Jomuna
LI
LSQ
MKVTREESMAPDIR
REGEXP
RFE
Rahmann
SQ
Sczyrba
Sven
TransProt
Volker
abbrev
cld
cldtab
csh
evalue
ida
idd
isodepth
isotab
keepleft
keepleftifsamesequence
keepright
leftseq
matchdesc
matchfile
maxlength
minlength
noidentity
noscore
qspeedup
randomlength
randomnum
rightseq
sa
scending
sd
selectmatchInit
selectmatchWrap
selectmatchHeader
seqnum
setenv
skipprefix
snum
src
sti
stitab
supermax
supermaximal
tcsh
tex
toc
usr
vol
vseqselect
vstree
vstreedir
vsubseqselect
xdrop
Embl
Genbank
Kirstin
REPuter
UX
abbreviub
dbfiles
embl
genbank
integersize
mapfile
postprocessing
readseq
sl
filenameprefix
filepath
maxclsize
minclsize
regexp
ESTs
Ecoli
EcoliO
KD
Matchconstraint
Matchkind
PK
PLAKN
argc
argv
ca
gunzipping
gunzips
gz
gzip
gzipped
indexfile
keeprightifsamesequence
maskmatch
matchconstraint
matchkind
myselect
myseqnum
nomatch
postprocessed
selectmatchHeader
smallseq
sp
swissp
tmp
unzipped
vlsi
GHz
Helden
Slezak
Tru
Zea
ac
bibiserv
formatdb
gov
haas
http
jvanheld
llnl
molgen
mpg
oligos
slezak
ucmb
ulb
website
AboutMkvtree
GT
SGI
TC
dbseqstat
endmatch
extraargs
gunzipped
lowcomplex
mstat
selsplicesite
selstartend
thaliana
xmlout
Bundesstrasse
AMD
BarleyBase
BarleyGeneChipProbeMatch
Debian
Genalyzer
HyPa
KPath
MGA
Multimat
OSX
PowerPC
Promide
Redhat
SpliceNest
SuSe
biotools
cgi
commolbio
htm
mitarbeiter
org
plantgdb
swedish
www
AE
Abouelhoda
Enno
Genomics
Mohamed
Ohlebusch
ecoliK
ecolicmp
gc
lspec
vm
weightfactor
wf
DECLAREdynamicseqnumshared
Multimatch
UNITSEP
Uint
contigs
formatmm
maxnummatches
mkrcidx
mmevalues
multiMEM
multimat
multimatch
multimatdef
numofunits
selectmultimatch
selectmultimatchHeader
selectmultimatchInit
selectmultimatchWrap
selmulticontext
seqnumrel
seqnumrelpos
seqs
showevalue
sortmultimatches
ttt
unitboundaries
unitfilename
unitol
aaatgg
acgtn
AF
ATsmall
basicstyle
cggtttaca
commentstyle
cp
ctttgactgtagttt
cttttgt
dbj
fprintf
gb
ggtttagt
gi
keywordstyle
prob
stderr
stringspaces
stringstyle
tatatt
Testdir
tttaacc
abb
ArrayStoreMatch
atESTcl
atESTcompORFs
atESTdbcl
atESTdbcldesc
atESTmd
atESTml
atESTq
atESTrn
atESTrs
atESTsn
callargc
callargv
citecolor
colorlinks
Dataflow
Ecolidbmaskmatch
Ecoliinfo
Ecolimum
Ecolipal
Ecoliqmaskmatch
Ecolisuper
Ecolitand
gapsize
genitalis
Gremme
hyperindex
latexonly
linkcolor
maxgapsize
mergematches
mingapsize
pagecolor
pneunomiae
Sbjct
sed
selectmatchFinaltable
stdout
Swissmask
urlcolor
virtualmultiseq
zcat
Zhu
codons
EcoliK
entrez
fr
idx
mkdna
multipart
ncbi
nih
Prot
prt
remred
showstringspaces
VMATCHCOMMENTTOSTDOUT
Vmatchalphabetsymbolmap
Vmatchoutput
xml
chainglobal
chainlocal
chainmaxgap
chainoutprefix
chainwf
maxgap
outprefix
pp
VMATCHRELATIVEINDEXPATH
cluedist
erate

GCAAGGTT
GTAATGGGGGTGATGTAATGGGGTTNTTACCCCNTCTTCCCNTNCCCNTTAAAAACT
TGCCGAGGAGAACAACGCAAATTGCAAGTNCAAGTNCGGCTCCTCTTGCAGCTGCGTNAA
TGCGTCAACTGCACTTGCTGCCCCAACTAATGANGCTTCTTTAATCAAAATGTAATATGA
TTTNATGTNGGGGCTCATCCTATTTGAGNCTCATGGTTTCTCTTTATTACTACCNCTCTN
matchcluster
cand
Codonseq
Proteinseq
CGviz
cgvizout
Katrin
mfdindex
nrset
singlets
Wimmenauer
ychrIII
BESToption
CGvizselfun
DBMASKMATCHoption
DBNOMATCHoption
DNAVSPROT
EVALUEoption
Edistoption
Gzipinputformat
IUBABBREV
LEASTLENGTHoption
Marisano
Mergematchesselfun
ONLINEoption
PLoption
QSPEEDUPoption
SELFUNoption
SMAPoption
SelectionConcept
VSS
VSSS
Vmatchinputformat
VtoTex
Xeon
dnavsprot
ATs
ATS
gt
memset
MEMset
memspe
Memspeall
multimatches
perl
printf
rcm
resultfiles
mup
queryfile
uniquesub
bothstrands
querypos
subjectpos
