<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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<Session genome="hg18" locus="chr2:177932001-180561093" version="5">
    <Resources>
        <Resource path="${DATA_DIR}bed/GSM1004654_100k.bed"/>
        <Resource path="${DATA_DIR}bed/GSM1004654_10k.bed"/>
    </Resources>
    <Panel height="410" name="FeaturePanel" width="1154">
        <Track altColor="0,0,178" autoScale="false" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="Reference sequence" name="Reference sequence" sortable="false" visible="true"/>
        <Track altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" colorScale="ContinuousColorScale;0.0;226.0;255,255,255;0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" height="35" id="hg18_genes" name="RefSeq genes" renderer="BASIC_FEATURE" sortable="false" visible="true" windowFunction="count">
            <DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="226.0" minimum="0.0" type="LINEAR"/>
        </Track>
        <Track altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" colorScale="ContinuousColorScale;0.0;818.0;255,255,255;0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" height="45" id="${DATA_DIR}bed/GSM1004654_100k.bed" name="GSM1004654_100k.bed" renderer="BASIC_FEATURE" sortable="false" visible="true" windowFunction="count">
            <DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="818.0" minimum="0.0" type="LINEAR"/>
        </Track>
        <Track altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" colorScale="ContinuousColorScale;0.0;74.0;255,255,255;0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" height="45" id="${DATA_DIR}bed/GSM1004654_10k.bed" name="GSM1004654_10k.bed" renderer="BASIC_FEATURE" sortable="false" visible="true" windowFunction="count">
            <DataRange baseline="0.0" drawBaseline="true" flipAxis="false" maximum="74.0" minimum="0.0" type="LINEAR"/>
        </Track>
        <Track altColor="0,0,178" autoScale="false" clazz="org.broad.igv.track.FeatureTrack" color="0,0,178" displayMode="COLLAPSED" featureVisibilityWindow="-1" fontSize="10" id="BEDTools Remove/Subtract" name="BEDTools Remove/Subtract" renderer="BASIC_FEATURE" sortable="false" visible="true" windowFunction="count">
            <PluginSource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" commands="/usr/local/bin/bedtools subtract" specPath="resources/bedtools_plugin.xml" xsi:type="pluginFeatureSource">
                <arguments>
                    <arg cmd_arg="" default="" encodingCodec="org.broad.igv.feature.tribble.IGVBEDCodec" name="Arguments" output="true" type="TEXT">
                        <value/>
                    </arg>
                    <arg cmd_arg="-a" encodingCodec="org.broad.igv.feature.tribble.IGVBEDCodec" name="Track A" output="true" type="FEATURE_TRACK">
                        <value>${DATA_DIR}bed/GSM1004654_100k.bed</value>
                    </arg>
                    <arg cmd_arg="-b" encodingCodec="org.broad.igv.feature.tribble.IGVBEDCodec" name="Track B" output="true" type="FEATURE_TRACK">
                        <value>${DATA_DIR}bed/GSM1004654_10k.bed</value>
                    </arg>
                </arguments>
                <parser decodingCodec="org.broad.igv.cli_plugin.BEDToolsDecoder" format="bed" strict="true">
                    <libs>BEDToolsPluginCodec.jar</libs>
                </parser>
            </PluginSource>
        </Track>
    </Panel>
    <PanelLayout dividerFractions="0.014251781472684086"/>
</Session>
