Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: VarScan
Upstream-Contact: Dan Koboldt http://genome.wustl.edu/people/individual/dan-koboldt/
Source: https://github.com/dkoboldt/varscan
Disclaimer: This package is not part of Debian because of the non-free
 Non-Profit license which is not compatible with DFSG since not permitting
 to make profit with the software is a restriction.  An attempt to convince
 the author to choose a free license failed so far:
    https://github.com/dkoboldt/varscan/issues/12
Files-Excluded:
    *.class
    META-INF

Files: *
Copyright: 2009-2016 by Washington University in St. Louis.
License: NPOSL-3.0
 The download page
   http://sourceforge.net/projects/varscan/files/
 says:
   VarScan 2 is licensed under the Non-Profit Open Software License 3.0 (NPOSL-3.0)
 .
 Non-Profit Open Software License 3.0 (NPOSL-3.0)
 .
   This Non-Profit Open Software License ("Non-Profit OSL") version 3.0
   (the "License") applies to any original work of authorship (the
   "Original Work") whose owner (the "Licensor") has placed the following
   licensing notice adjacent to the copyright notice for the Original
   Work:
 .
   Licensed under the Non-Profit Open Software License version 3.0
 .
   1) Grant of Copyright License. Licensor grants You a worldwide,
   royalty-free, non-exclusive, sublicensable license, for the duration of
   the copyright, to do the following:
 .
   a) to reproduce the Original Work in copies, either alone or as part of
   a collective work;
 .
   b) to translate, adapt, alter, transform, modify, or arrange the
   Original Work, thereby creating derivative works ("Derivative Works")
   based upon the Original Work;
 .
   c) to distribute or communicate copies of the Original Work and
   Derivative Works to the public, with the proviso that copies of
   Original Work or Derivative Works that You distribute or communicate
   shall be licensed under this Non-Profit Open Software License or as
   provided in section 17(d);
 .
   d) to perform the Original Work publicly; and
 .
   e) to display the Original Work publicly.
 .
   2) Grant of Patent License. Licensor grants You a worldwide,
   royalty-free, non-exclusive, sublicensable license, under patent claims
   owned or controlled by the Licensor that are embodied in the Original
   Work as furnished by the Licensor, for the duration of the patents, to
   make, use, sell, offer for sale, have made, and import the Original
   Work and Derivative Works.
 .
   3) Grant of Source Code License. The term "Source Code" means the
   preferred form of the Original Work for making modifications to it and
   all available documentation describing how to modify the Original Work.
   Licensor agrees to provide a machine-readable copy of the Source Code
   of the Original Work along with each copy of the Original Work that
   Licensor distributes. Licensor reserves the right to satisfy this
   obligation by placing a machine-readable copy of the Source Code in an
   information repository reasonably calculated to permit inexpensive and
   convenient access by You for as long as Licensor continues to
   distribute the Original Work.
 .
   4) Exclusions From License Grant. Neither the names of Licensor, nor
   the names of any contributors to the Original Work, nor any of their
   trademarks or service marks, may be used to endorse or promote products
   derived from this Original Work without express prior permission of the
   Licensor. Except as expressly stated herein, nothing in this License
   grants any license to Licensor's trademarks, copyrights, patents, trade
   secrets or any other intellectual property. No patent license is
   granted to make, use, sell, offer for sale, have made, or import
   embodiments of any patent claims other than the licensed claims defined
   in Section 2. No license is granted to the trademarks of Licensor even
   if such marks are included in the Original Work. Nothing in this
   License shall be interpreted to prohibit Licensor from licensing under
   terms different from this License any Original Work that Licensor
   otherwise would have a right to license.
 .
   5) External Deployment. The term "External Deployment" means the use,
   distribution, or communication of the Original Work or Derivative Works
   in any way such that the Original Work or Derivative Works may be used
   by anyone other than You, whether those works are distributed or
   communicated to those persons or made available as an application
   intended for use over a network. As an express condition for the grants
   of license hereunder, You must treat any External Deployment by You of
   the Original Work or a Derivative Work as a distribution under section
   1(c).
 .
   6) Attribution Rights. You must retain, in the Source Code of any
   Derivative Works that You create, all copyright, patent, or trademark
   notices from the Source Code of the Original Work, as well as any
   notices of licensing and any descriptive text identified therein as an
   "Attribution Notice." You must cause the Source Code for any Derivative
   Works that You create to carry a prominent Attribution Notice
   reasonably calculated to inform recipients that You have modified the
   Original Work.
 .
   7) Warranty of Provenance and Disclaimer of Warranty. The Original Work
   is provided under this License on an "AS IS" BASIS and WITHOUT
   WARRANTY, either express or implied, including, without limitation, the
   warranties of non-infringement, merchantability or fitness for a
   particular purpose. THE ENTIRE RISK AS TO THE QUALITY OF THE ORIGINAL
   WORK IS WITH YOU. This DISCLAIMER OF WARRANTY constitutes an essential
   part of this License. No license to the Original Work is granted by
   this License except under this disclaimer.
 .
   8) Limitation of Liability. Under no circumstances and under no legal
   theory, whether in tort (including negligence), contract, or otherwise,
   shall the Licensor be liable to anyone for any direct, indirect,
   special, incidental, or consequential damages of any character arising
   as a result of this License or the use of the Original Work including,
   without limitation, damages for loss of goodwill, work stoppage,
   computer failure or malfunction, or any and all other commercial
   damages or losses. This limitation of liability shall not apply to the
   extent applicable law prohibits such limitation.
 .
   9) Acceptance and Termination. If, at any time, You expressly assented
   to this License, that assent indicates your clear and irrevocable
   acceptance of this License and all of its terms and conditions. If You
   distribute or communicate copies of the Original Work or a Derivative
   Work, You must make a reasonable effort under the circumstances to
   obtain the express assent of recipients to the terms of this License.
   This License conditions your rights to undertake the activities listed
   in Section 1, including your right to create Derivative Works based
   upon the Original Work, and doing so without honoring these terms and
   conditions is prohibited by copyright law and international treaty.
   Nothing in this License is intended to affect copyright exceptions and
   limitations (including "fair use" or "fair dealing"). This License
   shall terminate immediately and You may no longer exercise any of the
   rights granted to You by this License upon your failure to honor the
   conditions in Section 1(c).
 .
   10) Termination for Patent Action. This License shall terminate
   automatically and You may no longer exercise any of the rights granted
   to You by this License as of the date You commence an action, including
   a cross-claim or counterclaim, against Licensor or any licensee
   alleging that the Original Work infringes a patent. This termination
   provision shall not apply for an action alleging patent infringement by
   combinations of the Original Work with other software or hardware.
 .
   11) Jurisdiction, Venue and Governing Law. Any action or suit relating
   to this License may be brought only in the courts of a jurisdiction
   wherein the Licensor resides or in which Licensor conducts its primary
   business, and under the laws of that jurisdiction excluding its
   conflict-of-law provisions. The application of the United Nations
   Convention on Contracts for the International Sale of Goods is
   expressly excluded. Any use of the Original Work outside the scope of
   this License or after its termination shall be subject to the
   requirements and penalties of copyright or patent law in the
   appropriate jurisdiction. This section shall survive the termination of
   this License.
 .
   12) Attorneys' Fees. In any action to enforce the terms of this License
   or seeking damages relating thereto, the prevailing party shall be
   entitled to recover its costs and expenses, including, without
   limitation, reasonable attorneys' fees and costs incurred in connection
   with such action, including any appeal of such action. This section
   shall survive the termination of this License.
 .
   13) Miscellaneous. If any provision of this License is held to be
   unenforceable, such provision shall be reformed only to the extent
   necessary to make it enforceable.
 .
   14) Definition of "You" in This License. "You" throughout this License,
   whether in upper or lower case, means an individual or a legal entity
   exercising rights under, and complying with all of the terms of, this
   License. For legal entities, "You" includes any entity that controls,
   is controlled by, or is under common control with you. For purposes of
   this definition, "control" means (i) the power, direct or indirect, to
   cause the direction or management of such entity, whether by contract
   or otherwise, or (ii) ownership of fifty percent (50%) or more of the
   outstanding shares, or (iii) beneficial ownership of such entity.
 .
   15) Right to Use. You may use the Original Work in all ways not
   otherwise restricted or conditioned by this License or by law, and
   Licensor promises not to interfere with or be responsible for such uses
   by You.
 .
   16) Modification of This License. This License is Copyright © 2005
   Lawrence Rosen. Permission is granted to copy, distribute, or
   communicate this License without modification. Nothing in this License
   permits You to modify this License as applied to the Original Work or
   to Derivative Works. However, You may modify the text of this License
   and copy, distribute or communicate your modified version (the
   "Modified License") and apply it to other original works of authorship
   subject to the following conditions: (i) You may not indicate in any
   way that your Modified License is the "Open Software License" or "OSL"
   and you may not use those names in the name of your Modified License;
   (ii) You must replace the notice specified in the first paragraph above
   with the notice "Licensed under <insert your license name here>" or
   with a notice of your own that is not confusingly similar to the notice
   in this License; and (iii) You may not claim that your original works
   are open source software unless your Modified License has been approved
   by Open Source Initiative (OSI) and You comply with its license review
   and certification process.
 .
   17) Non-Profit Amendment. The name of this amended version of the Open
   Software License ("OSL 3.0") is "Non-Profit Open Software License 3.0".
   The original OSL 3.0 license has been amended as follows:
 .
   (a) Licensor represents and declares that it is a not-for-profit
   organization that derives no revenue whatsoever from the distribution
   of the Original Work or Derivative Works thereof, or from support or
   services relating thereto.
 .
   (b) The first sentence of Section 7 ["Warranty of Provenance"] of OSL
   3.0 has been stricken. For Original Works licensed under this
   Non-Profit OSL 3.0, LICENSOR OFFERS NO WARRANTIES WHATSOEVER.
 .
   (c) In the first sentence of Section 8 ["Limitation of Liability"] of
   this Non-Profit OSL 3.0, the list of damages for which LIABILITY IS
   LIMITED now includes "direct" damages.
 .
   (d) The proviso in Section 1(c) of this License now refers to this
   "Non-Profit Open Software License" rather than the "Open Software
   License". You may distribute or communicate the Original Work or
   Derivative Works thereof under this Non-Profit OSL 3.0 license only if
   You make the representation and declaration in paragraph (a) of this
   Section 17. Otherwise, You shall distribute or communicate the Original
   Work or Derivative Works thereof only under the OSL 3.0 license and You
   shall publish clear licensing notices so stating. Also by way of
   clarification, this License does not authorize You to distribute or
   communicate works under this Non-Profit OSL 3.0 if You received them
   under the original OSL 3.0 license.
 .
   (e) Original Works licensed under this license shall reference
   "Non-Profit OSL 3.0" in licensing notices to distinguish them from
   works licensed under the original OSL 3.0 license.
Comment: For opinions about this license see
   https://lists.debian.org/debian-legal/2008/03/msg00126.html
   https://lists.debian.org/debian-legal/2008/03/msg00128.html
   https://lists.debian.org/debian-legal/2008/04/msg00055.html
 .
 Upstream was contacted about this license
   http://lists.alioth.debian.org/pipermail/debian-med-packaging/2014-April/026153.html
 but did not responded for 10 weeks.

Files: debian/*
Copyright: 2014-2016 Andreas Tille <tille@debian.org>
License: LGPL-3+
 On Debian systems the full text of the GNU Lesser General Public License
 is available at /usr/share/common-licenses/LGPL-3+

