a score=0
s hg18.chr11 93103815 100 - 134452384 AAUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAA-AAUUUCCCAGUAGGUUUU----C-UAUCUGCUACUUUGCUAG
s rn4.chr8 116925119 98 + 129041809 ---GGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAGAAAAAUUCCCAUUAGGUUUU----C-CAUAUGCUACUUGAGUAG
s canFam2.chr21 44003445 105 + 54024781 AAUGGUCAUUACCAAGGCUUUGAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAAAAUUUUCCCGUUAGGUUUUCUUCC-UUUUUGCUAGUUUGCUAG
s dasNov1.scaffold_2894 17097 100 - 85457 GCUGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUGAUUUGCUGUGGAGUUGACCAUAAAAAAAACUCUCCACUGGGCUUU----C-U-UUUGCUACCUUGCUAG
s loxAfr1.scaffold_17974 29100 99 - 49915 AAAGGUCAUUACCAAGGCUUUUAGAAUGCAGUUU--GAUUUGCUGUGGACUUGACGGUAAUAAAAACCUCCCACUAGGUUUU----C-UCUUUGCGACCUUGCUAG
s echTel1.scaffold_316886 80457 100 + 105239 AGUGGUCAUUACCAAGGCUUUUAGAAUGUGGUUUCUGAUUUGCUGUGGACAUGACCAUAG--ACAAUUUCCCAGGAGGUUUU----UGUUUUUGCUACCUUGCUAG

