CLUSTAL W (1.83) multiple sequence alignment


E-coli              GAAGCUGACCAGACAGUCGCCGCUUCGUCGUCGUCCUCU------UCG--GGGGAGACGG
C-vinosum           -----------------------------GGAGUCGGCCAGACAGUCGCUUCCGUCCUGG
X-fastidiosa        ------------------------GCGGUGAAGUCGGCUGGGCAGUCGCGUC-AUCCGAG
S-putrefaciens      -----------------------------CGAGUUGGCCAGACAGUCGCCGC-GUUCGCA
V-cholera           --AGUUGACUGGGUAGUCGCUGCCUUAUUGACGUCCCUUGGCCUAUCGCCAGGGAGACUG
                                                    **           ***            

E-coli              GCGGAGGGGAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAACGCCUGGGGGGG-
C-vinosum           UGACGGGGGAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAACGCCUGGGGGGCG
X-fastidiosa        AGGAUGCCGAGGAAAGUCCGGGCUCCAUAGGGCAAGGUGCCAGGUAACACCUGGGCGGCG
S-putrefaciens      AGAACGGGGAGGAAAGUCCGGGCUUCAAAGAGCAGGGUGCCAGGUAACGCCUGGGCGGUG
V-cholera           AUAAGGGGGAGGAAAGUCCGGGCUCCAUAGAGCAGGGUGCCAGGUAACGCCUGGGGGGCG
                         *  **************** ** ** *** ************* ****** **  

E-coli              -AAACCCACGACCAGUGCAACAGAGAGCAAACCGCCGAUGGCCCGCGC---AAGCGGGAU
C-vinosum           AGAGUCCACGGAAAGUGCCGCAGAAAAGAUACCGCCGACCCCGUCCUC------GGACGG
X-fastidiosa        UGAGUCGACGGAAAGUGCAACAGAAA-GAUACCGCCAAUAUUCCUUUC------UAGGAU
S-putrefaciens      UGAACCGACGACAAGUGCAACAGAGAGGAGACCGCCAUCAUAGCCUCG------GCUAAG
V-cholera           CAAGCCUACGACAAGUGCAACAGAGAGCAAACCGCCGAUGGCCUCUCUUCGGGAUGGGAU
                      *  * ***   *****  **** *  * ******                        

E-coli              CAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGGCUGGUAACAGUCCGUGGCA
C-vinosum           GAGGUAAGGGUGAAAUGGUGCGGUAAGAGCGCACCGCGCUGGUGGCAACAUC-AGUGGCA
X-fastidiosa        UCGGUAAGGGUGAAAUGGUGCGGUAAGAGCGCACCGCGAGUUCGGUAACGG--ACCGGCA
S-putrefaciens      GUGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGUGCGGCUAGCAAUAGUCCGUAGCA
V-cholera           CAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGUGCGACUGGCAACAGUUCGUAGCA
                      ************* ******************** *      * **         ***

E-coli              CGGUAAACUCCACCCGGAGCAAGGCCAAAUAGGGG--------------UUCAUAAGGUA
C-vinosum           GGGUAAACCCCACCCGGAGCAAGACCAAAUAGGGGAACUCGCGGCUUCGACCGCAGCGCG
X-fastidiosa        CGGCAAACCCCACCUGGAGCAAGACCAAAUAGGG---------------AUCCUAUGGUG
S-putrefaciens      AGGUAAACUCCACCCGAAGCAAGACCAAAUAGGGU--------------UCCGUAUGGCG
V-cholera           GGGUAAACUCCACCCGGAGCAAGACCAAAUAGGCC--------------UCCACAUAGCG
                     ** **** ***** * ****** *********                  *  *  *  

E-coli              CGGCCCGUACU-GAACCCGGGUAGGCUGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAUG
C-vinosum           CGGCCCGCGCGUGUUCCCGGGUAGGUCGCUAGAGGCGUGCGGCGACGCACGUCCCAGAUG
X-fastidiosa        UGGCCCGCGC-UGGAUCCGGGUAGGUUGCUUGAGCACCGUGGUGACGCGGUGCCUAGAUG
S-putrefaciens      UGGCUCGCGU-UGGAACCGGGUAGGUCGCUUGAGCCUGUGAGCGAUUGCAGGCCUAGAUG
V-cholera           UUGCUCGCGUUAGGAGGCGGGUAGGUUGCUUGAGCCAGUGAGUGAUUGCUGGCCUAGAGG
                      ** **     *    ********  *** ***       * **       ** *** *

E-coli              AAUGACUGU--CCACG--------ACAGAACCCGGCUUAUCGGUCAGUUUCACCU----
C-vinosum           AAUGACUGU--CCACG--------ACAGAACCCGGCUUAUCGGCCGACUCCCUUC----
X-fastidiosa        AAUGGCUGU--UCAUG--------ACAGAACCCGGCUUAUAGGCCGACUUCACCGCUUU
S-putrefaciens      AAUGACUGU--CCACG--------ACAGGACCCGGCUUAUCGGCCAACUCAACCU----
V-cholera           AAUGGCUACUACCGCGCAAGCGGAACAGAACCCGGCUUAUACGUCGACUCCACCU----
                    **** **     *  *        **** ***********  * *   *          
