a score=0
s hg18.chr11 93106287 115 - 134452384 UAUCCCGAUGGGGCUUUUCCUGUAGCCUGCACAUCGUUGGAAACGCCUCAUAGAGUAACUCUGUGGUUUUACUUUACUCACAGGACU----AUUGUUAGAUCUGUGGGAAGGAAUUACA
s oryCun1.scaffold_215179 61201 115 - 62759 UAUCCCGAUGGGGCUUUCCCUAUAGCC-AUUCAUCGUUGGAAACGCCUCAUAGAGCAACUCUGUGGUUUUGCUUUGCUCACAGGACU---UAUUCUUGGGUCUGUGGGAAGGAACUACA
s bosTau2.chr29 549595 114 - 45822729 UAUCCCGAUGGGGCUUUUUCUAUAAAC-CUACAUCGUUGGAAACGCCUCAUAGAGUAACUAUGUAGUUUC-CUUUACUCAUAGAACU---ACCUGUUAGAUCUGUGGGAAAAAACUACA
s canFam2.chr21 44005703 114 + 54024781 UAUCCCGAUGGGGCUUUUUCUGUAGAC-CUACAUCGUUGGAAACGCCUCAUAGAGUAUAUGUGUGGUUUC-CUUUAUUCACAGAACU---AUAUGUUAGAUCUGUGGGAAAGAACUACA
s dasNov1.scaffold_2894 19621 112 - 85457 UAUCCCGAUGGGG---UCUCUGUAGAC-CCACAUCGUUGGAAACGCCUCACAGAGGAAUGUUGUGGUUCAGCUUUACUCACAGAACU---AUUUAUUAGAUCUGUGAGAAGGAACUACA
s echTel1.scaffold_316886 83259 117 + 105239 UAUCCCGAUGGGGCCUUGUCUGUAGAC-CCACAUCGUUGGAAACGCCUCACAGAGUAACUCUGUGGUUUG-CUUUACUCGCAGAACUGCUAUUGGUUGGAUCUGUGAGGAAGAACUACA

