a score=0
s hg18.chr11 93107925 75 - 134452384 GCAAAAA-AUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUAUAAGAAGGGAUAU
s mm8.chr9 108937603 74 + 124000669 GCAAAAAUAUAAAUCCUCUU--GCAACCCAGAACUCAUUGCUCAGUAUGAGUUUUGAUAUAUACAAGAAGGAAUAU
s oryCun1.scaffold_94908 1068 74 - 5219 GCAAAAA-AUAAAUCCUCUUUUGCAACCCAGAACUCAUGGCUCAGUAUGAGUUUUGAUACAUACAAGCAGGAACA-
s bosTau2.chr29 551396 74 - 45822729 GCGAAAG--UAAAUCCUCUUUUGCAACCCACAACUCAUUGUUCAGUAUGAGUUUUGAUACAGAUAAGAAGGAACAU
s echTel1.scaffold_316886 84615 74 + 105239 GCAAGAA--UAAAUCCUCUUUUGCAACCCAAAACUCAUUGUGCAGUAUGAGUUUUGAUACAGAUAAGAAGGGACAU
s monDom4.chr4 174696894 75 + 430141050 GCAAAGA-ACAAACCCUCUUUUGCAACCCACAACCCAUGGUUUUGUAUGAGUUGUGAUACAUACAAGAAGGGACAA

