a score=0
s hg18.chr11 93103391 102 - 134452384 AA-GGUAUGUAUGCAUUAGAAAAGACAUUUGU--AUGGGUCAUUUCAAAGAGGGCUUAUGAGGCUGUGAAACCCAGAGCUCUUAACGCUGUGACCAAAGAUGGAA
s canFam2.chr21 44003070 102 + 54024781 AA-GGUAUGUGCACAUUUGAAAAAAUACCUUGCAGUAGGUCAUUUCAAAGAGGGCUUGUGGGACUA--AAACCAAGAGCUCUUAACGCUGUGACCAAAUAUUGGA
s bosTau2.chr29 546982 100 - 45822729 AA-GGUAUGUACACAUUAGAGAAAUAGUUUUU--GUAGGUCAUUUCAAAGAGGGCUGAUGGGACCA--AAUCCUGGAGCCCUUAACGCUGUGACCAAAGACUGAA
s oryCun1.scaffold_215179 58627 100 - 62759 AA-GGUACGUACACA--UGAGAAAAAAAUAAU--AAAGGUCAUUUCAAAGAGGGCUUGUGGAGCCAUGAGACCAAGAGCUCUUAACGCUGUGACCAAAGACUGAU
s rn4.chr8 116924867 98 + 129041809 AAAGGUAUGUGUA----UGGGAAGCGGGUAGC--GAAGGUCAUUUCAAAGAGGGCUUGGUGG-CUGUAAAACCAAAAGCUCUUAACGCUGUGACCAAAGAUUGAU
s rheMac2.chr14 92292829 102 - 133002572 AA-GGUAUGUAUGCAUUAGAAAAGACAUUUGU--AUAGGUCAUUUCAAAGAGGGCUCAUGAGGCUGUGAAACCCAGAGCUCUUAACGCUGUGACCAAAGAUGGAA

