a score=0
s hg18.chr11 93106303 113 - 134452384 UAGUG-G-UUGAGGUCUAUCCCGAUGGGGCUUUUCCUGUAGCCUGCACAUCGUUGGAAACGCCUCAUAGAGUAACUCUGUGGUUUUACUUUACUCACAGGACU-AUUGUUAGAUCU
s rn4.chr8 116927323 106 + 129041809 --------UUGAGGUCUAUCCCGAUGGGGCUUCGUUAGUAGCC-ACACAUCGUUGGAAACGCCUCAUAUAGUAACU-UGUGGUUUUGCUUGACUCGCAGGACUGUUUGUUAGGUCU
s oryCun1.scaffold_215179 61217 108 - 62759 -------GUUGAGGUCUAUCCCGAUGGGGCUUUCCCUAUAGCC-AUUCAUCGUUGGAAACGCCUCAUAGAGCAACUCUGUGGUUUUGCUUUGCUCACAGGACUUAUUCUUGGGUCU
s bosTau2.chr29 549611 106 - 45822729 --------UUGAGGUCUAUCCCGAUGGGGCUUUUUCUAUAAAC-CUACAUCGUUGGAAACGCCUCAUAGAGUAACUAUGUAGUUUC-CUUUACUCAUAGAACUACCUGUUAGAUCU
s canFam2.chr21 44005719 106 + 54024781 --------UUGAGGUCUAUCCCGAUGGGGCUUUUUCUGUAGAC-CUACAUCGUUGGAAACGCCUCAUAGAGUAUAUGUGUGGUUUC-CUUUAUUCACAGAACUAUAUGUUAGAUCU
s dasNov1.scaffold_2894 19637 107 - 85457 ---UGG--CUGAGGUCUAUCCCGAUGGGG---UCUCUGUAGAC-CCACAUCGUUGGAAACGCCUCACAGAGGAAUGUUGUGGUUCAGCUUUACUCACAGAACUAUUUAUUAGAUCU

