a score=0
s hg18.chr11 93106254 108 - 134452384 AAACGCCUCAUAGAGUAACUCUGUGGUUUUACUUUACUCACAGGACU-AUUGUUAGAUCUGUGGGAAGGAAUUACAAGACA--GUUGC-----UAAAAGUUUGAAAAAGACGGUUG
s rheMac2.chr14 92295789 97 - 133002572 AAACGCCUCAUAGAGUAACUCUGUGGUUUUACUUUACUCACAGGACU-AUUGUUAGGUCUGUGGGAAGGAACUACAAGACA--GUUGC-----UAAAAGUUUUAA-----------
s mm8.chr9 108936337 90 + 124000669 AAACGCCUCAUACAGUAACU-UGUGGUUUUACUUGACUCACAGGACUGACUGUUAGGUCUGUGGGAAGGAACUACAAGACA--GCUAA-----CAAAG------------------
s oryCun1.scaffold_215179 61181 96 - 62759 AAACGCCUCAUAGAGCAACUCUGUGGUUUUGCUUUGCUCACAGGACUUAUUCUUGGGUCUGUGGGAAGGAACUACAAGACA--GUUCAUUAAUCAAAG------------------
s bosTau2.chr29 549575 95 - 45822729 AAACGCCUCAUAGAGUAACUAUGUAGUUUC-CUUUACUCAUAGAACUACCUGUUAGAUCUGUGGGAAAAAACUACAAGACAAAGCUGC-CAAUUAAA-------------------
s canFam2.chr21 44005684 94 + 54024781 AAACGCCUCAUAGAGUAUAUGUGUGGUUUC-CUUUAUUCACAGAACUAUAUGUUAGAUCUGUGGGAAAGAACUACAAGACA--UCUAU-CUGCUAAAA------------------

