a score=0
s hg18.chr11 93103215 72 - 134452384 GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUUUAGAGGAUC
s panTro1.chr9 95004955 72 - 136640551 GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUUUAGAGGAUC
s rheMac2.chr14 92292658 68 - 133002572 GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAU----CUUUUGACUCCAGCUUUUUAGGGGAUC
s bosTau2.chr29 546812 59 - 45822729 AUUUAACCAGUAUCUACUCUC--CUUCAGGGCUACCUUGAAGAUGACAACCCUGGA--------------GGAGC
s canFam2.chr21 44002892 67 + 54024781 AUUUAACCAGUGUCUGCUUUCGUCCUCAGUGCUAUUUUGAAGAUCAUCACUCUGGC--------UUUGGUGGAAC
s dasNov1.scaffold_2894 16535 55 - 85457 ---------AAUU-UUUUUCU--UUUCUAGGCUAUCUUGAAGAUCUUGUUUCAAGC--------UUCAGAGGAAU

