# Locus 7

Sequence ID | hg18.chr11
Location | 93,107,925 – 93,108,000
Length | 75
Max. P | 0.996688

## Window 2

Location | 93,107,925 – 93,108,000
Length | 75
Sequences | 6
Columns | 76
Reading direction | forward
Mean pairwise identity | 86.01
Mean single sequence MFE | -18.02
Consensus MFE | -13.71
Energy contribution | -13.74
Covariance contribution | 0.03
Combinations/Pair | 1.06
Mean z-score | -2.12
Structure conservation index | 0.76
SVM decision value | 0.01
SVM RNA-class probability | 0.538812
Prediction | RNA

Download alignment: ClustalW | MAF

    >hg18.chr11 93107925 75 + 134452384
    AUAUCCCUUCUUAUAUGUAUCAAAACUCAUACUGAACAAUGAGUUCUGGGUUGCAAAAGAGGAUUUAU-UUUUUGC
    ......((((((...(((((((.(((((((........))))))).)))..)))).))))))......-....... ( -14.80)
    >mm8.chr9 108937603 74 - 124000669
    AUAUUCCUUCUUGUAUAUAUCAAAACUCAUACUGAGCAAUGAGUUCUGGGUUGC--AAGAGGAUUUAUAUUUUUGC
    ....((((.((((((....(((.(((((((........))))))).)))..)))--)))))))............. ( -20.30)
    >oryCun1.scaffold_94908 1068 74 + 5219
    -UGUUCCUGCUUGUAUGUAUCAAAACUCAUACUGAGCCAUGAGUUCUGGGUUGCAAAAGAGGAUUUAU-UUUUUGC
    -...((((.(((...(((((((.(((((((........))))))).)))..)))).))))))).....-....... ( -15.90)
    >bosTau2.chr29 551396 74 + 45822729
    AUGUUCCUUCUUAUCUGUAUCAAAACUCAUACUGAACAAUGAGUUGUGGGUUGCAAAAGAGGAUUUA--CUUUCGC
    ....((((.(((...((((((..(((((((........)))))))...)).)))).)))))))....--....... ( -15.20)
    >echTel1.scaffold_316886 84615 74 - 105239
    AUGUCCCUUCUUAUCUGUAUCAAAACUCAUACUGCACAAUGAGUUUUGGGUUGCAAAAGAGGAUUUA--UUCUUGC
    ......((((((...(((((((((((((((........)))))))))))..)))).)))))).....--....... ( -18.30)
    >monDom4.chr4 174696894 75 - 430141050
    UUGUCCCUUCUUGUAUGUAUCACAACUCAUACAAAACCAUGGGUUGUGGGUUGCAAAAGAGGGUUUGU-UCUUUGC
    .....(((((((...(((((((((((((((........)))))))))))..)))).))))))).....-....... ( -23.60)
    >consensus
    AUGUCCCUUCUUAUAUGUAUCAAAACUCAUACUGAACAAUGAGUUCUGGGUUGCAAAAGAGGAUUUAU_UUUUUGC
    ......((((((.......(((.(((((((........))))))).))).......)))))).............. (-13.71 = -13.74 +   0.03)

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## Window 3

Location | 93,107,925 – 93,108,000
Length | 75
Sequences | 6
Columns | 76
Reading direction | reverse
Mean pairwise identity | 86.01
Mean single sequence MFE | -16.99
Consensus MFE | -16.25
Energy contribution | -15.89
Covariance contribution | -0.36
Combinations/Pair | 1.24
Mean z-score | -2.58
Structure conservation index | 0.96
SVM decision value | 2.73
SVM RNA-class probability | 0.996688
Prediction | RNA

Download alignment: ClustalW | MAF

    >hg18.chr11 93107925 75 - 134452384
    GCAAAAA-AUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUAUAAGAAGGGAUAU
    .......-....((((.(((((......((((((((((........)))))))))).........))))))))).. ( -17.66)
    >mm8.chr9 108937603 74 + 124000669
    GCAAAAAUAUAAAUCCUCUU--GCAACCCAGAACUCAUUGCUCAGUAUGAGUUUUGAUAUAUACAAGAAGGAAUAU
    .............(((((((--(.....((((((((((........)))))))))).......)))).)))).... ( -18.40)
    >oryCun1.scaffold_94908 1068 74 - 5219
    GCAAAAA-AUAAAUCCUCUUUUGCAACCCAGAACUCAUGGCUCAGUAUGAGUUUUGAUACAUACAAGCAGGAACA-
    .......-.....(((((((........(((((((((((......)))))))))))........))).))))...- ( -16.99)
    >bosTau2.chr29 551396 74 - 45822729
    GCGAAAG--UAAAUCCUCUUUUGCAACCCACAACUCAUUGUUCAGUAUGAGUUUUGAUACAGAUAAGAAGGAACAU
    ((....)--)...(((((((........((.(((((((........))))))).))........))).)))).... ( -15.69)
    >echTel1.scaffold_316886 84615 74 + 105239
    GCAAGAA--UAAAUCCUCUUUUGCAACCCAAAACUCAUUGUGCAGUAUGAGUUUUGAUACAGAUAAGAAGGGACAU
    .......--....(((..((((((....((((((((((........)))))))))).....).)))))..)))... ( -16.30)
    >monDom4.chr4 174696894 75 + 430141050
    GCAAAGA-ACAAACCCUCUUUUGCAACCCACAACCCAUGGUUUUGUAUGAGUUGUGAUACAUACAAGAAGGGACAA
    .......-.....((((.(((((.....((((((.((((......)))).)))))).......))))))))).... ( -16.90)
    >consensus
    GCAAAAA_AUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUACAAGAAGGAACAU
    .............(((((((........((((((((((........))))))))))........))).)))).... (-16.25 = -15.89 +  -0.36)

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Generated by `rnazCluster.pl` (part of `RNAz 1.0`) on Fri Nov 24 16:49:09 2006