##maf version=1 scoring=single_cov2
# single_cov2.v11 single_cov2 NC_006146.NC_004367.orig.maf
# maf_project.v10 /dev/stdin NC_006146
#
# "blastz NC_006146 NC_004367 Y=3400 H=2000
#    A    C    G    T
#   91 -114  -31 -123
# -114  100 -125  -31
#  -31 -125  100 -114
# -123  -31 -114   91
# O = 400, E = 30, K = 3000, L = 3000, M = 50"
a score=37861.0
s NC_006146.genome  1995 3755 + 171096 CCGAGAACCTGCTGACAGTCGCGCTGCGGGGCGGCAACGATGACCCTAGGCCTCAGCGCCAAGAGAGGGCCCGAGAGTTGGCCCTCGTCGGCATTCTATTGGGCAACAGCGAGCAAGGAGAACGCCTCGGCACGGAGAGCGCCCTAAATGC------CTTGAGGAACAAGTATGTTTATGCCTACGGACCAGACTGGATGGCCAGACCCTCGACATGGTCCGCGGAAATCCAGCAGTTCCTGCGCCTCCTGGGCACAAAGTACGTGTTGCGCGTGGAGCTTGGCCGACAGTTTGGCTTTGAGGTCACCGGAGCCAGGCCCTCCTTCCGACAGTTCCAGGCCATCAACCACATTGTCCTCTTTGACAACGTCCTGCGCAAGTACGAGCCGGGACAGGCGTCCGCGGGCTTCCAGAGGGCTCTGTTGGTCCCCGGCCCCCCGACCGTGGACG----TGAGGCCGGATCTGC--------GCACCGTCAACGAGTGGGTCTTTGGCGGTGTGG----------CCGGCGGGGGCAGGCAGCTGGCCGACGAGCTGATGATAGTGTCGCCGCTGCGA-GACACCTACTCGGGGCACCTGGTTCTTCAGCCCACTGAGGCTCTGGACGTTTGGAGGGCGTCGAATAGGGAGAGGGAAGCAACACAC-------AGTCTG-----------GAGCACGGCTTCGTCCACACGGCGGGGACCATCCAGCCCAACTGCCCTCAGCTGTTTATGAGACGGCAGCAC--CCTGGCCTTTTCCCCTTCGTTAGTGCAATAGCATCGTCGCTTGGTTGGTAC--TACCCGGCCCTCGCAGGCCCAAGCCCGGATGTCAGGGAAGACGC--------CAGGCGCCAGCAGGCCTTCCAGACCAAGGCGGTGGCGGAATGTCACGCCAGGAGCGGGGTGCCGGTTGTGGCCGGCTTCTACCGGACCGTCGACACCACTCTTAGAGGAGGAGAGGGCCTGACGCCCACCATGTTTACCGGGGAGCTGGGAGTCATCAGACACCAGGCGCTGGACACCGCGAGGTACGAGTACGGCCAGTACCTGGTCATGCTGGGGCCTTT----CCATCCCTGGAGCAACCTCACCGCA------CCTCCGTGCCCCTACGCCGAGAGCGCGTTGGCCCAGGCTACCGTCCAGACCGCTCTGGAGCTCTTCTCCGGCCTCTATCCGGCACCGTGCGTCTC---GAGCC-ATGCGC-GCCCACCCGGCCCCTGCGCCCTGATCGAGCACCTGCGATCTCTGGTTCAGAAAGGGGGGCTGCTGCTGTTCCTGTCCCACCTGCCGGAGGATGTGA-------------AGGGGGGGATAGGGGACCTGGGGACGGCGCAGGCCACGAGCCGGGGGATAA--------AGCAGTACGTCGAAACCTACTTTCTCAATCCAAACTGCTCCAACGTGTTCCTGATTGT----GAGGCAGCGGGGGGAGAAAATCAACGGCCGCGGCGTCCTACAGGCCCTGAAGCGTGCCTGTGAAGTGGCAGGGTGCCAATACTACGTGCTGGGCTCCACGGTCCCGCTCGGGGGGCTAAACTTCGTCAACGACCTGGCTTCCCCCGTATCCACCGCAGAGATGACGGATGACTTTGCCCCCTTCTTCAGCGTGGAATTTCCCTCC--------ATCCCAGAGGGCG--AAATGAAATCCCCCGTCCACTCAGACACGGAAGAGCGCATGGACGTCTCCCCCTCTCACGA---------GTCTTCCTGGCTCTCGCTGAGCTCCTGCCTCACCAGCGTTCTGTCACACCCCAGCGTGGGGAGCAAAGAGCACCTGGTCAGACACACAGACAGGGTCTCTGGGGGCCGCGTGGCCCTTCAGCCCGGGGTGGGTCCCCTAGACCTGCCACTTGCCGATTACGCCTTTGTGGCCCACAGTCAGGTCTGGGTCAGGCCAGGCGGGGCACCCCCGCTGCCCTACCGGACC-----TGGGATC-----GCATGAACGAGAAGCTGCTGGTCTCGG--CGAGGCCCACCGACGAGGCCCCCAA-GGTCTCGGGTACCGTGATTACATTGGGAGAACAGGGGTACAAGGTCACGCTGGATCCGATAGAGGGCACCAAGCTGGCCATGGTCGAGGCGCTGATGAACGCGGCCTTTGCCCCGCTCGTGAATC---CGGAAGACGTCCTGCTCACTCTGAATCTCCACGCGGAC----CCGGGCCGCGTCGACAGCACCGCGGTCATGGACTTGATGACGGCGGCCAGCGACTACGCGCGTGACCTGGGCGTGAAGCTGACGTACGGCTCGGCCTCCTGCCCC------------GAGACGGGCTCGGCG---------GGAACCGGCTTCATGACGGTGGTG------GTCACGGCCTCGGCACGCGGGGAATTCTCCGCTCCCCTGATCACGCCGGTACTGCAGAGATCAGGGAGCCTCCTACTCTCCGTGAGACGCGGGGATGGCAAGATCCAGGGCGGGTCGCTCTTTGAGCAGCTCTTCAGCGACGTGGCCACGGCCCCGCGGGCTCCCCAGGCCGACGCCATGAAGATTATCTTCCGGACGGTCCAGGGGCTGGTGAAAAGCGGCCTCGTGCTCTCGGGGCACGACGTCAGCGACGGGGGGCTGGTTACGTGTCTTGTGGAGATGGCACTGGCGGGCCAGCGGGGGGTGACCATCTCGGTGCCGGCAGCCGCCGACTACCTCCCCCAGCTATTCACCGAGCACCCGGGCCTGGTTTTTGAGGTCGAGGAGGGAAACATGACCGAGGTGATGCAGACCCTGCGGG---CCCAGAACATATACCCCGC--CGTCCTGGGCCGG----GTGGGCGAGGCGGGGGCAGATCAGATGTTTGAGGTGCAGCACGGCTCAGAGACGGTGTTCCGCCAGTCCCTGAGTCTGCT--ACTGA--GCACCTGGTCCACCTTTGCCACCGAGCAGTACGAGTTTCTGCGCCCGGGGCGCCTCAACCGATCCATGCACGTGTCCGACTACGGCGAG--AATGA--AGCGCTGGCCATCTCGCCGTTAACAGGAAAGAATCTCGGC----CTGCGCCGCCTGGTGACAGAGCCGGACCCTCGCTGTCGGGTGGCCGTGCTCTGTGCCCCGGGGACCAGGGGCCACGAGAGCCTCCTGGCGGCCTTCACTAACGCGGGGTGCCTGTGTCAGCGGGTATATTTCCGCGACGTCAGGGAGACCACGTTCTTTGACAAGTATGCGGGGCTGGCCGTTGGAGGCGTCCACGCGGCCAGGGACGCCCCCCTAGCCGGCCGTGCCACCGTGGCTCTGATTGATCGCTCACCCGCCCTGCGAGACGCCCTGCTGAAGTTCCTGGCCAGGCCCGAGACGTTTTCCCTGGGCCTGGGGGAGCTAGG-GGTGCAGGTCCTTGCCGGCCTCGGGGCTGTGGG--GT-CCACGGACC--CAACGCCCGAGCCGGGGGTAGAAATTAATGTC-----------CAGAGATCACCCTTGATTCTGACAACAAATGCCTCGGGATTGTTTGAATCACGCTGGCTAAACTTCAGCGTGCCACACGACACCAAATCGGTCATGCTGCGTGGCATCCGGGGCTGCGTCCTGCCCTGCTGGATTCAGGGCTCACATCTGGGACTGGAATTCACTAATCCCGCTATGCCTTATGTTTTACAGAACTCTCACCAAAT----CGCCTGC-CACTTCCATAGTCATCGCACTGACCCCTGGCGCCACGCTGAGCATTATCCACGAAATCCCTCGGAGCGGAGCAACATCTCGGGGCTCTGCTCACCCGACGGCCGCCACCTGGCACTCCTGTGTGACCCGTCACTTTGCACAGACTTTTGGCAATGGGAGTACATTCCCTCCGCCTTTGCCCCCTACACGGGGTGCTCTCCATGGACTCTTATGTTTCAAGCAGCGCACCTCTGG
s NC_004367.genome 11272 3785 - 149696 CTGAGTGGCTTTTAATGGTCGCCCTTCTCGGTGACCAGAGTGATCCTAGGCCCGTGCGACAACAGAGAGCTCGGGAATTGGCTCAAGTGGGAATTCTATTAGGAAACAGCGTTGAAAGTGAGGTTTTCACTACGGATAGCTCTATAATTGCGCCTGACACGGGTAACACTTTTTCCTGCACATATGGTCCTGACTGGCTTTCGAGGCCTACGACATGGTCTTCTGAACTTCAGCACATATTAGAAATTCTGGGTTTGGGTAAGGTTTTGCGAGTTGAACTCTGTCGACGGATTATTATCCCGGTAGGACAAAGACGGCCAAATCTCAATCATATTTCTGCCCTAAACCGAGTAGTGCTGTTTGACCGGCTTTTCAATAGATATGAT---------GCATCT-----TTTCCCGGG--------------CCGGCAATCAGAACGAACACGCTATTGCCAACAAATTCGCCGCAGCAAAGATCATCAAAGGTCAGCCTTATGGTGTTTGGGGACATTAGAAATGACGGTGTGGGTTCCATGGCGGACGAGGTAAAATTGGTGTCAC----GCGATGACAATTATGCCGGCCCTACCATTCTTTATCCCACCTTGGATGCTGATGTCTGGAGAT------ATTTTCTGAGGGAATCCTCTTACTCTTCTGATTCTGCTGCGGTAAAGGAAATGGGGTTTATGCACGTAGCCGGCTGTATTGAGACTCTTTGCCCGCAACTAATGGTTAAGCGTCAGCATATCTCGGCATTT--CCTTTTGTGGAGCCGCGGGCAATTTGCTTGGGTTGGTATGATGTCAAGTCTCCTCCGGGACAGC----AATCTCTTGGAAAGTGCAGTGAACGCGAGCGTATACTGACCGTCCAA------GTGGCGACCCGGAGTTTCTCCGGCCTCGGAACGCCAACGGTTGCCGGGTTTTACCGAGCCATGGATGCTGATGTTGTAAATGGATCTGGACTGCAGAATACTATGTTCTCCTGTCAGCTCGGATGTGTGTCAGGACAGGCTATGGAGTCTAGTCGTTACGGCTACGGACAATATGTGGTGATGCTTGGTAATTTTTCACCATCATT----------CACCGCGTTGGATCCGCCTGGCATGTTCGCAGATAGCGGTTGGGAGCAAAACTGTACACAGACGGCTTTAAATGTTTTTAAATCTCTGTACCCAGGACCGTGCATTTCTGGAAGCCGATGTCCAGCGCATCCAGCATCTGTGC-----TGGAAACACTGTCTACTCTGATTGAAAAGGGTGGCCTCCTGATTTTCTTGTCCAGTCTTCCACCTAGCATAACCCAGCCTTTACTAAGGGGAGATG-----CCT----ATGACGGAGAGAATTCGCTCATGTCTGACTACTACAAGCAATGTTTC-----CTATTCGCCTCGT-------GCACAAATCTGTTCCTGATCATTAATGAGGCATCG-------AAAGTTGGTGGTTTTACGCCTCTAAAGGCCCTTCGGCGTGCATGTCTATTGGCAGACTGCCCTCTCCACATTCTTGGTTCTACCGTTCCACTTGAGGGTATCAACTTTGTCGCTGATGTGGATAACCCAGTTCCTACTGAAGATTTTACAGATGATCACGCTCCTGTGTTTACCGT-----CCCCCTCCTGTTACCGAATAAAAAGGCCATCAGACGACATCCTGGAGTAGCT---ACAGTAACCAAGGCAT--ACAATTCCCCCGATGGTGATGACATAGAATGGTCTATGCTTTGTCTAAATTCATGCCTGACTCAGGTTCTCTCTCATCCTACTGTTGGAAGCAAGGAACACATAGTTAGACACATGGATAGATGTTCAAACGGTTTAATTGCTTTGCAACCAGGTGTCGGACCACTTGACATACCTGTGGCTGATTACGGTTTCGTGGTCTCCAGC--AGCATATATGATGAAAAGCAG------TCCGATGTTTTACCGTACACAGCGTGGGATAATGCGGCGCGAATGAGACG----TGAACTCGAGCCTGGGACTGCC-------CTTCCAACTGTGAAAGGGACGGTCATGGTATTGGGTGAACAGGGGTATAAAAGTATGCTTAGTCTGGATGCGGGAATTAAGCTGTCTATTGTGGAGTCAGTGACTAATGCTGCATTTGCTCC---CGTAAAACGAATTGAGGACCTCCTATTGACACTCTATCTACACTTGGACGAAATTGAAACAGATAAAAATGACCTTGG----GAGACTACTAGCGCAAACCAGAGCCTATTGTAGGGAACTCGGCGTACGTCTGACCATAGGATCGGCTTCAAGTCCCCGAGATGCCCGGGAGATGGAATTCGCGTCGCAAGAGGCAACAAAATTTAGAACCGTGGTGTGTTCTGCGACAGCCCCTGCCC------AATTTAGTGGCTATTTGTTGACGCCGGCCCTGCGAGGGGGCGGCACGGTCTTAATTCATGTAAGTGTGGAAGACGGCCCAACAATTGCCGGATCAATATTGGAACAGATTTTTGCTGGGAAGCCAAAGATTCCGACTATACCGCGGGTCTTACGCGTGAGGGAGCTTTTTCTGGCCATCAAAGAGTTAATGGCACTCGGCATGGTTGAATCCGGCCATGATGTCAGCGACGGCGGTGTATTGGTATGCGCAATTGAGATGGCCTTAGCGGGAAACAGGGGAATCAAAATATCGGTACCTGAGGATCAGGATATCATGGAGGAAATGTTTTCTGAGGCCCCAGGGGTGATCTTTGAGGT---------ACACAGGGCCCACGCTGAGCGCGCCCTGAAGGAACTGCAAGGCAGGCAGCTTAGAGCATTCCAGATAGGTGCTGTAGGGGAAGAGGGACTCGACAAATTGATTGAAATTTACCACGGCCAGAAATTGCTTTTCCGGCAGTC----AATCTCCTTAACTAGAGGTACCTGGTCTAGTTTTTCTATTGAGCAATACAACTTTCTTCGTCCTGAATCAGTCAATACCTCTATGTACGCCATGGACTACGGTAACCCAGTTATTACCCTTAAACATCCCG--------AGGAAGAATTCTATACGCAACCACTTAACTTAGTCACCCACCCAGATCCTCGCTGCCGAGTAGCAGTGTTGTGCTGCCCGGGGACAAGCGGCAGCGACCCACTTATGGCCGCATTTACAAATGTAGGCTGCCCGTGTGTTCGCGTGCTGTTTCGGGAAGTGAAGTCTGAAGCATTCTTTGACCAATTTTCCGGCTTGGTAATAGGTGGCGCTTGCGGGGCTCAGGACGCACTCACGGTTTCCAGGGGCATCGTCATGACAATTACCAAAAAAAGCAAGCTACGCGATGCCCTGCTAAGATTTTTTCAAAGGAAAAATACATTTTCTCTGGCTGTAGGGGAAATAGGCTGTGCAA-TTTTCACCGGCTTGGGTATCGTCGGTAGTATCACCGACTATCCACACCCGGGC---------ACACCAATATCACTCGAATCGGCAGAAGTTAC-------TTTGGCCCAAAACGTGTCAACCATGTATGAATCACGATGGCTCAGCTTTAGCATCCCGCCAACAACCAACGCCGTAATGTTACGTCGCCTGCGCGGTCTCATCTTGCCTTGCTGGATTCAGGGAACTTATTTGGGATTCAACTTTCTAACTCCTGCATCTCCCTATATTTTGCAGGA-----ACGAGGTCTTACGGCGGCACATTTCCACGGATCGGGATCTCATCCATGGAACACTGCGCAGCATTATCCACGAAACCCGGCTGAAGCCAATAATGTAGCCGCGCTTTGCTCCGCGGATGGTAGACACCTGGCTATGTTATTTAACCCAAGCCTTTGTACACAGCTGTGGCACTGGCCACATATTCCCTTCCAAACAAGATCCCACTTGCTAGGCTCTCCGTGGCTTCTCGCATTTCAGGAAGCACACATTTGG

a score=3100.0
s NC_006146.genome 12486 160 + 171096 CCTCGGGCCCCTCTGGA--------CTCCGGCTTCCCCATCCCAGCCGCTCCCCGGCCTCCTCTCCTCCCTGCCTTCCCTCCCTCTCTGTCCTCCCCGCCTCTCCCACGAGCCCATGTGTCCCCACAAGCCCAGAACCCGGCCCTCGAGGCCTCACAGCCCAGGCCAG
s NC_004367.genome 21135 155 - 149696 CCTCGGGCTCGCCTGGGACTTACAGCCGCGATGGCCCCAGTCTAACCG-------GTCTTCTCTCTCCCCTGCCCTATACCCATTCCCCACCTTCCCGCCGCTAAGACCAGGTCTCGTGATCCAAGGCGCCCGGGAGAAGGTACTGGAGG------AGCCCAGGTAAG

a score=3554.0
s NC_006146.genome 14104 543 + 171096 CCTCCCCGGCCACCCCAGGCCCGTCCAGGGGGGACTTTAGGTGACC--CTCGGGCCTGG-CTTACCATAGACTCCCATGTAAGCCTGCCTCGAGTAGGTGCCCTCTGAGCCCC-CTTTGCCCCCTGGCAGGCCA-----------GCCCGACCCCCAG---------------CCGCCCCCAAACCTCGCCCACACGT-CCAGGGGTCCTCGAGGAAGAGGCCCAGTCCACTCAGCCCCGTGTCCACTGCCCAGTTCCCCCCAGGAGCCCCTAAAAGT-------AGGGACTCAGG-CCATGCGCGCCCAGTTGGCGGGCCTGTCAGACAGCCCTGTCTAGGGCCGGGAGAGGCAGCCCCGAGGCGGGC-ACAGG----------AGCAGGCAGTCTCTGGTAGTGATTTGGACCCCAAATCTGACACTTTAGAGTTCTGGAGGACTTTA-----------AAACTTGA--AAAATCTAAACTTTTGAGGCGATCTGGGCGCCATTTTGTCTCCGCGTGCGCATAATGGCGGCC-CTGGACCCAGGAAACGGGTCTATGGTTGGCTGCGC-CACGTCTATCTTTAGAGGGGAAAAGAGGAATCAGTCC
s NC_004367.genome 23219 538 - 149696 CCCCCTAAGACCCACCAGGACCACCC--TGGAGCCCCCAAGTCTCCACCTTGGGCCTAGTCTCCCCATAGACTCCCATAGAAGCCTGGCTAGAGTAGCAGTCTTCCTAGCCCCTCCAGGGGTCCCAGTAAGACATACAGGCGCGTGCCTCACCACAAAGTTTCCTTATGGACTCCCTCACTAAACACCACCAACAGGGACCAGGGGTC-------------------CCACTC-------------CTTTCTGGTACCCC----AAGCGCCCAAAAGTTTTAGACAGTTCCTCGGGTCCCCAAGTGTCATTTTACCGGGGCTG------GGTCCCACACCAGTCCCAGGGAGGGTGTCAGGAGGCCGGCTACTGGGTTAGGGCACGGTAGGGTGTCTCTGTGAGCCCTTCTGA----------GGCACTTTGTAGT----GAAAAATTGAGTTTAGTGTCCAAATTTACATAAAAATTCAATGCTGAAGGCTAAAGGGCCGCCATTTTGTATCTGAGCCGCCATGTTGCGAGCTGCTGAA-----------AGTC-ACAGTTGGCCTCACTCGTGGCTATCTTTAGCGTGGGAAACAGGAATTGGGCC

a score=3100.0
s NC_006146.genome 15568 160 + 171096 CCTCGGGCCCCTCTGGA--------CTCCGGCTTCCCCATCCCAGCCGCTCCCCGGCCTCCTCTCCTCCCTGCCTTCCCTCCCTCTCTGTCCTCCCCGCCTCTCCCACGAGCCCATGTGTCCCCACAAGCCCAGAACCCGGCCCTCGAGGCCTCACAGCCCAGGCCAG
s NC_004367.genome 26959 155 - 149696 CCTCGGGCTCGCCTGGGACTTACAGCCGCGATGGCCCCAGTCTAACCG-------GTCTTCTCTCTCCCCTGCCCTATACCCATTCCCCACCTTCCCGCCGCTAAGACCAGGTCTCGTGATCCAAGGCGCCCGGGAGAAGGTACTGGAGG------AGCCCAGGTAAG

a score=3550.0
s NC_006146.genome 29509 110 + 171096 CCTCCCCGGCCACCCCAGGCCCGTCCAGGGGGGACTTTAGGTGACC--CTCGGGCCTGG-CTTACCATAGACTCCCATGTAAGCCTGCCTCGAGTAGGTGCCCTCTGAGCCCC
s NC_004367.genome 20307 111 - 149696 CCCCCTAAGACCCACCAGGACCACCC--TGGAGCCCCCAAGTCTCCACCTTGGGCCTAGTCTCCCCATAGACTCCCATAGAAGCCTGGCTAGAGTAGCAGTCTTCCTAGCCCC

a score=1817.0
s NC_006146.genome 30902 23 + 171096 AGGGACGTGGGAACACAAGAACC
s NC_004367.genome 30564 23 - 149696 AAGGATGTAGGAACACAAGAACC

a score=8353.0
s NC_006146.genome 33523 1591 + 171096 GGGGCGT------GGTCCCCGGGACCCCAGCACCCTCCCGGCCTCC---CTCCCTAGGTT------GTGCCCGGCTTGCCTGG----CCCTGGTGCTC----CTCCGGGGGTCGCCGCGTTCGCTGGTCC----GGTTT---GGGTGGGCGTGGTCCGCGGGTTC----GGTGCACCTGGAAGGCAACGGGGGTGGGGGAGGGAGGGGTGTGGTCCCCGGGACCCCAGGCCCCCACCCGGCTTCCTCCCCGGGGTGTGCCCGGCCTACCCCCGTTCTGGAGCTCCTCCGGTCCGGTGGGTGTGGTCCGCTGGGTCCGCTGGTC---CGGGTGGGCGTGGTCCGATGGGTCCGCGGGTTT----GGTGCACCTGGAAGGCAACGGGGGTGGGGGAGGGAGGGGTGTGGTCCCCGGAACCCCAGGCCCCCACCCGGCCTCC----TCCCCGGGGTGTGCCCGGCCTACCCCCGTCCTGGAGCTCCTCCGGTCCGGTGGGTGC---GGTCCGCTGGGTCCGCTGGTCCGGGTGGGCGTGGTCCGCTGGGTCCGCTGGT--CCGGTGCACCTGGAAGGCAGGGGGGGGGTCGGGGCAGGCGGGCGTGGTCCCGGGGCCTATGCCGGCCGGGGGTCCCGTG-GCACGGGGC---CGGGGGTCCCGGG------GGGCAGCCGCGACCCAGCGCGCCCCGTTCACGGGGGAGGATCG--CGGCCGGGCCTCCCGGAGCCCCGGCGAGGGTGGGGGGTGCGCCCCCAGCCGGACCCTGGTGC--------CAGGCAGGGACCTCGCGCCG---CCCGCTTCATGGGGGGGGAGGCCGCCGCAAGGACGCCGGGCC--GGCTGGGGGTTGTGCACCCCCCGAGCGTCTGGA-CGACGCTGGCGACCCCGGCCAGCGCGCCTTCTTTTATTCACTTTT-----TGGGGGCG-----------------CTGT--GCAATACCTTAAGGTTT-GCTCAGGAGAG-----------GG------GGCTTCCTATTGGTT---AATTA---------------AGGTGTGTCATTTTAG-------------CCCGTTGGGT--TACCTGCAGGT-----------GTGTCAC-CAGGTGGGTGGTACCTGGAGGTCATGCTATTGGGTTAACGTGAG-AGGGAGGAGCTAAGGTCCGC----GAGATTTGGGGTAGGCGGAGCT-----------------------TCAGGAGGGTCCCCTCCATAGGGTTAAACCAGGAGGGGGAGGTTCTGCG----CCCCGTTATACCTAGTGGGTGGAGCCTGGAGGTAGGT---ATCCATAGGGTTTCATTATCCTGGAGGTATCCTAAGCTCCGCCCCTATATACCAGGTGGGTGGAGCTAGGTAGGATTCAGCTAGGTTCCTACTGGGGTACCCCCCTATCCTACCTCGAGGTGCGCCACCCTTCCTCCCTTCGTTATAATGGTAGCATAACCTATAGGTTATTAACCTAGTGGAGGAATAGGGTACTACAGCTGGGTATATACCTATGGGTATATACCTATAGGTATATAGAAACCTAGAGGAAGGGAACCCTATAGTGTAATCCCTCCCCCCCCTA-CCCCCCCTCCCTTACGGTTGCCTGAGCCCATCCCCCACCCCAGCACCCCGGGGTGACGTGGCACCCCTGCGTGCTTTTCGGGTGCATCACCTTTGCACATTTGGTCAGCTGACCGATGCTCGCCACGCCCGGGTCATGACC-TGTCACTCG-CCTTGTCCCGTGGAC-TCTGTCCCC
s NC_004367.genome 32426 1592 - 149696 GGGGCGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCC-----AGGCCTCCCGGGT-------------------TTTCCGGGTGCCCAGGCCTCC---CGGGTTTTCC------GGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTT-----CCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCC-----AGGCCTCCCGGGT-------------------TTTCCGGGTGCCCAGGCCTCC--CGGGTTTTCCGGGTGCCCAGGCCT--CCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTT------TCCGGGTGCCCA-GGCCTCCCGGGTTTCCGGGTGCCCAGGCCTCCCGG--GTTTTCCGGGTGCCCAGGCCTCCCGGGTTT--TCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGGGTTTCCGGGTGCCCAGGCCTCCCGGGTTTTCCGGGTGCCCAGGCCTCCCGG--CCCATACCGCGGTCCAGAA-------CCGCCCAGCTCCTGGAGCTCCCAGCCCAGGCCAGGACCCCGCGCTTGTTCCCGGTTCATTCGGGGGGGGGCCGCGACCTGGA-ACCTGACCAGGGCCGAGCGGTCTA-GCCGCCTGGGCGTCCAGAACGCCGCTGA--ACCCGGGCAGGCGCGC-TCCTTATATTCAGTTCTGTCCTTGGGTGTGTCCCATTCTCTCTATTCCTATTGGTTAAACCTTAAGGTCTCACTCAGCTGAGTTATTCCTTCTGGTTTCTCGTGTTCCTATTGGTTCCTACCTATAGGTCCCACCCTACAGGTTAATCCTCCTGGTTCAATCTGGGCTCCTATTGGTTAATACCTGTAGGTTGTGACCCACAGGGTTACTCAGGTGGGTAAT-CCTGGAGGTAATTGCATTAGGTGAACGGGAGGAGGGAGG------GGTTTGCAGCTGAAATTGAGAATGGGCGGAGCTAGGGACCTGCTGAAGCTCCGCCCTCTGGGTTGTAGTCCCATTGGGTTTAATTCAGTGGGGGGGGGGTTTGGGGTTCCCCCGATATACCTA------------------TAGGTTCCACCCACCGGGTT---------------------AAACCCCGCCCAT----------------------------------TTTAATTCCAGCGGGATACCCCCCCTATTCCACTGCCGTTTATCCTATAGAATTTCCGCTGGGTTCCACAGGAGGGTACCCTTCGGTAGGTACCCCTACCGGTAGGTATTGGTACTACAGGCGGGTATATATA-------ATATATATATAGG------AGAACCTATAGGA--TTAACCTAGAAGAGATACCTAACCCCCCCCTAACCCCCCCCTTCCCAAATGTAGGTCACCCCATCCCCCACTC-------------TCCATTGGCCCCATTGCGTGCCTTTCACCTCTGTCATCATTACACATTCAG--GGCACACTCATTCCTCCGGCATTCGGGGGTCAACCGGGGGACACGTCCCCGTCTCGCGGACAACTGTCCCC

a score=3281.0
s NC_006146.genome 36140 364 + 171096 TGTGGATTTTACCAGAGTGTTTCAAGAAATCTTCCACCGTGGAAATCCCACTCTGGGACGAGCGTTGGCCTGGCTGGCCTGGTGCA----TGCATGCCTGCAGGACGTTGTGTTGTAACAGGAATACTCCCTACTATGTTGTGGACCTGTCGGTTCGTGGGATGTTAGAAGCCAGCGAAGGCCTTGATGCTTGGATTCACCAGCAAGGCGGCTG-------------GCCTTCTTTACTGAGGGGCAACCGTTCAAACACCGGAAGC----CCCATATTGACTGCATTTTTAGCTGGACTAACTTTAACT---TTCGTAGTTGTGTGTAGCTATCTCTT--TATCTCTGGAAGAAGACGCTGATTTATA-TGCCTGTATTCAGCACTTTAC
s NC_004367.genome 35298 374 - 149696 TGAGAATTTTATATGGGGTGTTCAAGAAGAATTGTTTGGGGATGGCTGTAATTGGGGAAGGATTGTAGTTTGGCTAGCTTGGTGCTGTTTTATGTGCC-GCTGCACTCGGTGTTGTGAAGA---------CTATAATCTGGTAGATGCTGTATTTCGAGGTGTTTTAGAATCAACGGAGGGTATTGACGGTTGGATTCATTCTCATGGTGGCTGGGACAGGTTCTGTGATTTTTTGGCTTCTAGGCA--CGTTCA---GCAGGAATCTGAACACATTTTGATTAGATTGTCAGTTTTTATGATGCTAACTACAGCCGTTGCTGTCTGT-GCTGTGTTTGGATATCTTTGCAAGTTGGC-CTAGTTTATACTTTTTGTTTTTAGAATGTTAC

a score=35379.0
s NC_006146.genome 37414 1849 + 171096 ACTTAGCCAGTGGGTCTTAGCAGGCCCCAAGCCCCGCGAACCCTCCCTGTTTCACCCCGTTATTCCAATAGAATGACAGATTGGCTTTCACAACCAGTCAATCCACCCCTGGCTACCCAACAAACACAGGACAGGTGTTAAGG--GTCCGAGATTACTGTTTATTTTCTAAAATTAGCTGTGTGTAGTTGATGATCTGCAGTCTTAGTTCGTCCCCGCACTCTAGATCCTTAATGGCCTCGAAGATGGCGTCCTCATCGACGTTAACTGCCTTCTCGTGGACAGCGTCCCTGGGGCTGACTTTTACACAGAAGGAGTCCCCTATCAGATCCACGGCCAGTTCGTATGCGGGGCCAATGTTTTCACAGAGGAGTTTCAGGCAGGTCTCCGGGATGTGTAGGGAGGTGCCTTGGAGCAGAAGATGCATGTTCAGGCGTCCTCTCCCGGTGGTGCTGAATATG------GGGCACACAGTGCCACAGAAGTGGCCGGCGACCAGATAGGCATAGAGCAGGCCGGGCTGGGAGAGTCCTGCCTTCACGGCGCTGGGGGAGCTGCTAAGCAGGGACACATAGAAGGTCTTATTGGGGATGATCTTGTGGACGTTATTGAAGAAGGAGAGCTGGGTGGAGCTGAACTCCTGAGGCACGTGAACCTGGGATTTGTTGATGCAGACCTCACAGTGGGAGCCCAGAGTCAGGCTGTGGCCAAAGGGGGAGAGTCGAAGGCAGCGGCCCGGAGACAGTGTACAGAGAGACAGCGGTAGGAACACGGCCTCTGACACGTGGATGGGGGTGTTCATCTCACGCAGAAAATCTTTGCCCAACTCAAAGTTGGCAGAGATCCCCCTGAAGAATTCACGCAGCGTAAAACTGGACCCGTCTCGGCGCCGTGTGTGCCTGGAACATCTGGAGCGGGCCACACTGCCGGCCCTTTCCATCTTTCCCAGCCCCAGATACGTT-----TTGCCGCTCCGTGCCACCGATCTCACGCTCCGACCCGAGGCCTTCGAGGCCACGTAGTCTCTGTGG-------TGCGGATGCATGGGGTGG---------TGGCAT-CTGGGATTAGCGGGC-CTCTGCTGGCACACATCCCCTGCCTCCGGGGTGA----------CGGGTGCCATCCGGG---CTACTTTTCACACGTATACCTGGGATGTCTGATAAGACTGGACCAGGTTTAGGCCGTGGAGACGCAGGACCCCGTCCAGTTCCTTAGTGACATCCACGAGTATTGTTTTGCCCACTCTGGCCACTTGTGTGGATTTAAATATGTACACAAGCGTAATTAACGCGTCGCATACCCCCTGTTCTAGGTTCTGCCCGGCCGCGAGAGCTGCCTTAAAGGCCTGGAAGCTGGGTG---------GGTAAATCTGACCAAAGAGCACGCTCGGATCGGTGATGGCGTGGTTGATGGCACATAGGGGGTCGCAGAACAAGTGCTTGTGGAAGTCCTGCGGGGTGCACATCTGCAGCCAGGCCCTGAGCCTGGGGCAGCTCACGTCCAGCAGCGCGTTCTGGGTTTTGATGAGGAACACAATCCTGTCCAGGATTTTGATGTTGTTTCCAAAGGAGACCAGGATAAGGCTCTTGAAGCGGTCGAGGGTGGCCTTGGCATCCGGGTGGGCCCCCAGACTCTCGCAGAGGGGGCAGATGGTCCGTGAGCCGTTCTTGTGTCGCAACCCAAACATGGGGGCCAGCAGGCAGGGGCCCTGTGAATGGTCGCCGGCCTCCGGTCTGGGGAAGGCCAGGGCCATTTCCGCGAGC-----------GCATCCCCGCTGTATTCCG------CGTTTAAAACGATAGCATGGTGGCCGGGTCCTCCCAGCAGGTCCGTGTCTCTCCAGGTGCCCATCAGCAGGCCGCAGTAGTCGGCCTT
s NC_004367.genome 36183 1845 - 149696 ACCTACCCTGTAAACACTAGTTCATCCCAATTTCCGCGCCCATACCCTAGCCCCTGGCGTTTAACCTATAGAATTACGGTAAGGATATCA---------AATTAGGCCCTAACAAATGACAAGATATAGATTAG---TTAAAGCAGAACGAT-TTATTGACTTCTCTCTGATATGAGCTGAGTGTAGTTGATGATTTGTAATCTTAATTCATCGCTCCAGTCTAGGCCCTTGATTGCTTCATATATGGCGGATTCGTCGACACTGATAGTTTTTTCCTGCACGCCTTCTAGGGGCTCAAAATGTAGGCAGAATGTCTCTCCTATTAAATCCAGAGTTATGTTATAAGTAGGACAGATGTTGCCACTGAGGAGCTTAAGACACGTTTCAGATAGGTGAAGTGACGTTCCTGGAACCATTAAAAACATTGTTAG----TTTGCCCCGGGGGT--TGAATGTAAAAACTGGGCATGCCTTCAAATCAAAATGCCCGGCCAGGATAAATGCATATAAAAGTGTTGGCTGCCTAATTCCAGCCTTAACCGCATCCGGTGAGTTACTGAGGAGGGACACATAGAATTGCTTGTGAGCAAGAACTTGGTGTACATTGTTGAAGAATGAAAGTTGAATTGAGCCAAGTTCCTGAGGGATGTCCAGTATAGCTCTCCCTGCACAAACATCACAGTGGGATCCCATGACTAGACTATGTCCGAAAGAGGAGAGTTTTAAGCACCTCCCCGGGGGTACCGATGCCAGTCTAAGAGGTACTGAAATAGATTTGGAAACACATATAGGGCGGTTTATCTCTCTTAAAAAATCCTTCCCCAATTCAAAATTTGTAGAGATGCCTGTAAAGAACCTGTCTAGTGT-----------CAGCTGGGTGCCGAGTCTGTCCTGTGATTTTG--ATGAGCCATTGTG---------TTCATTTCTTCTGTGACGGGAAACGGTGGAAACAATTGTTC--TGGCCCTAATACCAGGC----GCCCGAAATTTCCAAGG-------GTCTTTTTTGACGATTTTGTTAACGCCTCGTGTCGAATCGGGCCTGGCATACTGCGAATAACGTCCGCCATTCTTGCGTGTCAGTTGTGTGTAGGGGGCGAATTTAGGCATTGTATGTAGTGTGGGTGTTTAGACTTCAGACGTAAATCTGCGAGGTCTGGTACGTCTGTATAGTCTCTAAACCGTGACGCCTTAAAGCCGCATCCAGCTCTTTTGTGACATCTACAAGTATAGTTTTGTTTATTCTTGAAACTTGAGCTGATTTAAATATGTACGTAAGTGTAATTAGCTCATCACATACACGGTTTTCTAGGTGTTCACCATTGGCTAATGCCGCCCGAAATGCC-----GCAAGGTGTTCTCTTTTAGGAAGT----CCAAATAAAACCCCATGATCTGTTGTCTTATGATTGATGGCACACATTGGATCACAAAAGAGGTGTTTGTGAAAGTCTTGCGAGGAACATCGGGATAGCCAGGTTTTTAATCGGGGGCATGATACATCCAGAAATGTATGAGAATCTTTGAGTATAAAGGCAATTCGGTCTAGAATTTTTATGTTGTTCCCAAATGAAGCCACTATGCGTGCTTTTAGGCGGTCCAGGGCGGACTTGGCATCTGGATGTCCGGCCAGGATTTCACATAGTGGACATATTGTGCGGGATGCATTTTTCTTTTTTAGGCCAAACATAGGAGCGAGTAGGCTTGGTCCCTGTGAGGTGTCAACATTCCC--------GGGGGGT---GTCCAATTCTTAAAACTTGAGAACAGGGAATTGACACTGTCTTTCATCTGCCCGTTAATGACAATGGAGTATCTGTCTGGTTTTTCCAGTAAGTCGGTTCCTTCCCATATGAAAGTTAAGAAATCACAGAAATCATGCTT

a score=17016.0
s NC_006146.genome 39440 536 + 171096 TCTGGGCCACATGGACTTGAAGCAGAAGTTGGCCGGGGCCTGGCCCGTGAGGATGGATTTAAGGAACTCGAGTTTGTAGTAGCCCAGGTTGGCGTTGCGAATCATGTCTGAGGAGGACACGGGGAGAAAGCACCGGGAGATGTAAAAGTGGAGCTGGATGTCAATGGCCAGGATCCTGGAGGGCATGAAGAGGGACTCCAGCCCCCCCGCCATGGGGAAGTATTTCATCAGGATGTGTAAAAAGTCCACGCCCGTGATGAGGCTGGAGATCCAGGCTCTGGGGGCGTTGAGACAGTAGTAGCATAACAGGGCATAGTCCTCGAAGAAGGCAACGGGGGCCTCGGAGTGATTGACCAGGGTGTCCAGCAGATCGCAGACGCGGCAGGTGCTGGCTGGAGATAGGGACTCGTAGGTGTGGACTAGCGGGGGGTAGGCTACCCCTTCCTCCGCGTTGGCGGGGAGGTAGGAGTGGGTCTTGAGCATCCTTGCCGCCTCCGGCTGGCTTTTGAGATTGTCCACGGT---CCAGGGGACAAACT
s NC_004367.genome 38211 536 - 149696 TTTGGGCCACATGGATTTGAAGCAGAAGGTTGCAGGCCCCTGTCCCGTAAGAATGGCCCTTAAAAACTCGATTCGATAGTATCCTAGATTAGCACCATGAATCATCTGTGTAGTTGTGATTGGGAGGAAACACCTGTTCACAAAAAAGTGCAGTTGCACATCAACGGCTAACAGGCGGTGGGGCATGAATAAGGTGTCCAGACTGCCAGCCTCTGGAAAGTGAGCCATCAATAAGCGTGTAAAGTCCACTGCGGCGATGACTGTCGAGAGCCAAGCCCTTGGAGCTCTACTACAAACGTAGCATAGAAGGGCATAGTCTTCGAAGAAGGCTATGGATGGGTCCGTGTGGTTTACTAACGAGTCGAGTAGGTCACATATTCTACATGTACTTGCTGGAGACAGGGATTCATATGTGTGTGCCAGAACCTCGTTTTTGAGCCCCTCGTCCGTGGCTGTGGGGAGATACGAGTTGGCC---AGAAGTGAGGCCACACACGTCTGGCTTTCAGCTAGAGCCCCGGCTTGCCATGGAACAAACT

a score=26826.0
s NC_006146.genome 40209 816 + 171096 GACGGCGACCCGGGTG---GCAGTCTTTTGAGTTTCTCGCCTATGAT-CCGCCCAGATCTCGCGCCCCTGATTGCACCGTCCGCCTACGCGAGGCTGAACCTCCTGAATCACTGCCTCTTTCTGGAGGCGTTTAAGGAAGAGAATAGCGGTCGGGGCCTCGGTG----GGGTTCAACGAGAGGTCTTATTTTTGAAAG--GGACACTATAAAACAGGTCATTGCCCGGATTGTGGCTGCTGACAGCACCCTAGACCTAGTTAATCA---TGGTGAGCCCGGAAGAGAGGCTCCTAGACGAGCTCAATAACGTGATTGTGTCCTTTCTGTGTGACTCGGGGTCTCTGGAGGTGGAGAGATGCTCGGGGGCCCACGTGTTTTCCCGGGGGAGCTCTCAGCCCCTCTGCACAGTGAAGCTGCGCCACGGACAGATCTACCACCTGGAGTTTGTCTACAAGTTCCTGGCCTTCAAGCTGAAAAACTGCAACTACCCCTCCTCTCCGGTGTTTGTGATCTCCAACAACGGCCTGGCCACCACCCTGAGGTGCTTTCTACACGAGCCCTCGGGTCTCAGGTCCGGGCAGGCGGGCCCGTGCTTGG---GGCTGGCCACGGACGTGGACCTGCCCAAGAACTCCATCATCCTGCTGGGACAGGACGACTTCATTAAGTTTAAGAGTCCCCTGGTGTTCCCGGCCGAGCTTGACCTTTTGAAGTCCATGGTGGTCTGTAGGGCCTACATCACGGAGCACCGGACGACGATGCAGTTTTTGGTGTTTCAGGCCGCCAACGCCCAGAAGGCGTCGCGTGTCATGGACATGATTAGTGATATG
s NC_004367.genome 39013 827 - 149696 GGCGAGGACCTGAGTGTCCGTGATCTTATCAAATTTGAGTCCATGTTACCAACAAGTATTCGC----TTAATCGCGCCTACTCCATTTTCTAGGCTAAACCTTATAAATTATTGCTTGTTTTCCACTGTGTTTTCCCAGGAAAGCAACAG-CGAGGTTTTTGTACCGAATGTTCACCGTGATGTGTTATTTTTTAAAGAAGGATATTATTAAACAGATTATAGCACGGATTGTGGCTGCTGACAACGCTTTAGATCTAGCTGGTCAACATGCAGGACCGGGGGCAGAAGTTTATAGACGATCTTAATAACATCATCGTGTCCTTTTTGGGTGACTCTGAAACTTTGGAGGTGGAGCGATGTACGGACATGCATGCTCTTTCGAAGGGTAGTTCTCATCCTATCTGTGTGGTGAAACTCAGGCATGGAAAGATTTATCATCTTGAATTTGTCTACAAATTTTTAGCCTTTAAACTTAGGTGTGAAAAGTATCCCTCTTCCCCCGTTTTTGTAATTTCGAACAATGGGATGGCCGCAACTCTTAAGTGTTTTCTAGGTGAGCCTTCCGGTTTGAGGGAACAACAGGGTGGAACAAGTTTAGTTAAACTGGCTACAGATGTGGATCTGCCCAAGAATTACATGATTGTTATTGGGCAGGATGACTTTATCAAGTTTAAGTCTCCTTTTGTGTTTGCTCGAGATCTGCACACGCTGCGTTCCATGGTTGTATGTAGAGCGTATCTCACTGAGCAGAGGACAACCATTCAGTTTTTGGTGTTGCAAAGTGGAAACGAACACAAGACCTCCGGCGTTTTAGATATTATTCGGAAGATG

a score=20233.0
s NC_006146.genome 41726 2227 + 171096 CTGCTGGCTCTTTCAGCGC---TCACCGGCGGG--GGGTGCGGCGCTGTGGCCTTTTGCAACGCCTTCTTCCTCACCTACTTTTTGCTGGTGCGCTCTGTTTTCCCTGCGTTTTCTGAGAGAATAGCCGCCTGGATTTGCACCCGGTCCCCTTTCTGTGAAAACACCCGGGCCGTGGCCAGGGGCTACCGGGGCCTCGTGAAGAGGTTTCT------GGCGTTCGTGTTTCAGCGCAGTAGCTGCGACCCCCCCTTGCTGAGGCAGAACCCGAGGCCCGTGGAGCGCTACTTTGCCATCAAGAATTATGTTCCCGGCCTCGACCCGCACAGCTGCGTGACGTTGCCGAGCTACTCCCTCTGGGCCCGGGCTCACGCCGGTGAGCTCGACCCTAGGGAGATT----CGCGACAGGGTGACCCCCTCTGCCGCCGCCCCTCCCTGTGTGGCCGATCACGCTTCGGCCCTGCTGGCCACACTCCAGAAGAAGGCCTCGGACACCCCCTGCGGGAATCCAATCCAGTGGATGTGGTACCGCCTGTTGGTGAACTCGTGTCTGCGAGGCGCCCGTTGTCTCCTGCCCGTCCCCGCCGTCCCCGAATGCGGGAGGAGGATGGGTGGTGGCGGGGAGGAGGAGCGGGAGCCGGAGTGCCCT---------GCGAGGTTGCTGACTGGCCCGGGAGGTCAGTGTCTGAGCCGGGACGTCTTCGTGGCGGTCGTGAGCCGCAACGTCCTATCGTGTCTGCTGAACGTGCCCGCCGTGGGCCCCCTGGCCTACAAGTGTTTTAGGTCCCGCTCCCCCTCCCGCCCGGTCTGCGGCCCGGATCACCCTCCCCTGGCCGTGTTCTGCCTGGACTGCGGCTACTGCCTGAACTTTGGGAAGCAGACGGGGGGTGGGGGGGCGCTGAATTCTTTCAAGCCCACT---CTCCAGTTTTATCCCCGCGACCAGAAGGAGAAGCACGTGCTGACGTGCCACGCCAGCGGCCGCGTGTACTGCTCCAACTGCGGCTCGCCCGCGGTGGGCTGCCTGAGGCTGGCAGAGCCCCCCAGCGCCCGCTCGGGCTGGCA-------------GCCGCGGATCCGGGCGGTGCTGCCGCACAACGCGGCCTACGAGTTGGATCG--TGGCTCGCGCCTCCTGGACGCCATTGTCCCCTGCCTCGGCCCCTCCCGCACCTGCATGAGGCCGGTGGTCTTGCGGGGGGTGACGGTCAGGCAGCTCCTGTATTTAACTTTGCGGGCCGACGCT-----------------------------------------------AGGGCCGTCTGTCCC---------GGCTGTCAGCAGCGGCGC-------------------CAAGC---TCCGGAGGACTC--CCGCGAC-GAGGCCCATCCTCTCTCCTCCTGTTTAGAGGTAGAATTGCCGCCGGGTGAGAGGTGCGAGGGCTGCCGTCTCTATCACGCGCGGTATGGCACGCCGGCTGCCCA----AGCCCACCCTCCAGGGGAGGCTGGAGGCGGATTTTCAGGACAGCCCCCTGCTTCCTAAATTTCAAGAGCTGCAGCAGGGCAATCTCCCCAACGACGTTTTCCGGGAGGCTCAGAGGAGCTACCTGGCCTTTCTGACGGCCCAGTCCTGCTACGAGGAGTACGTGCAGCGGACCTTTGGGGTGCCTCGGCGCCAGCGCGGCCTGGACAAGAGGCAGCGGGCCGGCGGTGCCGC-CCAGGTTAGTCACTCTCACCCGGCCGGCGCGGCCTCGGCCGCCCAGGGCCAGCAGGCGCAGCCCGTGGCAGGGGGTGGCTTAGCGGGGGCAGCAGCGGCTGCCTCTGCCCCGGCTGCGACCCCCGCCGTCTCCTCGTCCATCAGTAGCCTGCGGGCCGCCACATCTGGAGCGGCAGCCTCCTCGGCGGCCGTTGACACCGGCTCCGGCGGCGGGGCCCAGCCCCAAGACACCTCCACGAGGGGCGCGCGCA--AGAAGCAGTAGGAGACGCGG------------------CACGCGGT-GTATGCA-----CTTTATTAATAAA---CAATTACAGATACAAAAACTTGAGTCTCTCCAGGTCTGTGATGAGCCGGTGGGTGGAACGCTCCAGTTTGTGGCGAAGCTGGGTCACGAAGCGAGTCAGGACGCGGCGAGCCTGGGCGAGCGTGAGGCTATAACGCATGTCCTGGTCGGGGGT--------TGCGGCGGACAGAGAGGAGTGGGCCGCAGAGGGGACCACCAGGTCTCCGGGCGTCGACCCCCCTGACACCACCTCCCTAATAATGTCTTCAATAGACAGGAACTGGGTGACAACTGAGGGAGTATTCCACAATA------------ATTCTGGTTGGTCGCTAGATGGCG
s NC_004367.genome 40552 2167 - 149696 CCGTTGGCTGTCTGCGCGCGCTCCACCCACTGGTTGGCAATGGGGTTTCTGCTCTGTGCAATGTATTTCTGCTGGTTTATTTTTTAACTGTACGTGAGTTATTGCCGGCGTTTTCTGATGAAATCATGGCCTGGATTTACCTAACTTTTCCATACTGCGAGGGAACAAGGTCTGTTTCACGAGGTTACAGATCCCACATAAGGAAATTTTTTTGTGAAGCGTTA----CACAGGGCA--AATTATGACCCCCCTCTTATCAAAATTGATGGGAAAACAGTGGAGAGATATTTTTCCTGGAAGAATCGTGTTCCCGGCTTAGACCAGTTTAGCTTCGTGCCTGTCCCGG------CCATCAATGATTCGGATA--------GAAGTCGGACCTTGCCAGGCTATACTGCTATGGGAGGA-----GATGAAGCTGCACAT------------GATGATGCT---GCCCTCCGCGCC---TTGCAGGGACATGCTTCAACTGTTTGTTGTGGTAACCCTGTACAGTGGATGTGGTTTAGGCTTCTGGCTGCATCCTGTTGCCGCTCTCGCCATTGTTTGCTGCCTGTGCCCATTGGAACGGGTCGTGGCAAGGGGACGTGTAGTATTGGAGATG-----TGTGGGCC----TGCTCTAACGAAAACGCGGAACTACTGA---------------------------GTGATGTCTTTTCTGCAGTTGTGTCCCGTGCTACACTGTCTTGCATACTCGACATTCCACCAGTCGGTCCTTATGCTTTGAAGTGTTTTAGGGGCCTTT-----TGAAGCACAATGTGC---CCAGA-------------GCTTGTTTTTGTTTGGATTGTGGTTACTGCTTAAACTTTGGAAAGTCCACCCGGT---------CATCTTCTACCTTTAAGCCCAGTAGTTATCACTTTTATCCACGTGACCAAAAGGAAAAACATACGCTAGTGTGCAACTCTAGTGGGCGTGTGTATTGTTCTAACTGTGGCTCTGCTGACCTTGGGTCTATTCCTCTTGTTGAGCCCCCTAGTG-------GGGAGGGTGTGTGGGGGGCTTGGCCAAGAATTAGGGCAGTACTGCCCCATAATGCGGCCTATGACTTCAGACAAATGGATCGACCTT--TAGACGTTGTTGTCCCATGTCTGGGGGGCGCCCGCACTTGTGCCCGTCCAACGCTGGTCAGGGGAATGACTATAAGGCACCTCTTGTATTTAACGCTGC---CTGACTCCCTCGATAAGCCACGTTGTTTTGTGTGTGCACAAAAAACCTGGTCTAGAGAGGTGTCTGTCACAACACAAAGGCCTGACGGTGAATGCTCTGTAAAGGGTTTTGAAGATCAAGCGCTTCCAGACGAACAGGACGCGATAGATACCGAATCTATTTTCCCCTGTTTCAGAATAAAATCTCATCCCAGACTTTGGTGTGCCGGGTGCAGGTTGTTTACTGCCAGATATGG-ACGGCAGACGTCCACCTCGTCCGAATGTGCAAAGTAGGCTAGAGGCAGATTTTCCCAATCACCACTTACAAACCAAATTCATGGAATTGGTTCAAGGTAACCTTAGCGACAAGGAATACCGTGAGGCTCAAGCCGGATATCTGACATTCCTTATCGCCGAACATTGTTACGAAAACTACGTGCAGCGGATGCACGGTGTACTTCGAAGGCAA-GTGGCTCAGGCTAGA-----------CGCGGTGCAGCGTCAACTTCATCAC------------------ATATCGG------AAGTATAGCAAGTGCAGCC----------------------------ACGGGAACTGCCTCTA----------GTGTTCAGCCTTCTGCT--------AGTAGTGTTCCTGCCACCACACCGAGTCCTGCACGCACC-------------ATACCGCCCCCAGT-----CTCCCAGCCCCCA-ATAACTCTGTCCGTGTCACAAGCATCCGGTACAGACGGTGGCGCGGGTGATACTGGTTCGAGACCAGGCCGTAGAAAGTAAAAAGTTTTATTAATAAAAGTTAATTACATATACAAAAACTTAAGTCTGTTTATGTTATTGACTAGGTCTTTACTGATCCGTCTGAGTTTCTCACGTAATTGTGCTATAAATGTTAGCAGCACATCTCTAGCCTGGCCTAGAGTGAG-----AGAGAAT-CCAAGATCGGTGGTGATATCTGTGCGGCGCA-----GTGCACGGGATACCGGGGAAACTAGTGAATGT---GGGGATGAATTTGCGGAAAGTACGTTCCTAATAATTTCTTCTATGGTGAGAAAATTGGTTACCAGCGATGGAGTGTTCCACATTGTCAGGGTGTAGTTTTCTGAAAAGCCACTAGATGGTG

a score=25894.0
s NC_006146.genome 45525 2053 + 171096 TGAAGCACTTCCAGACGATGTTTTTTCTGTTGGCCAAGACGGCCACGGTGGGGGCCTGGGC--------CTCCTTGGGCTTGGCCGCCCTGGCCTCCGCGAGGAGCTCGCGCAGCCAGGCGGCCTGCCTCGCGAAGACGGACATCTCGGGCTCAAAGGACTCGGAGTAGCCTTCCAGGTCCTTCATAAAATCCAGGGAGACCGTCTCCGCCAGGGAGCGGAAGGGCTCTGAGCGCCCGTCGCAGTAGAGCAGCGGGGCCACGACCCTGACCTGGCCCAGAGTCTTCACGTTAAACAGATACTGGGAGGAGACGAAGAGAGTCAGGGGAC-----GGCCGAGGAAGGCCGCCGCCACGGCCGCCTCGAAGACGGAGAC-------------------GGGGATGGCGTCCCCCGAGCCCCTTTTGGGACCGGTGATGGGGGTTCCGTAGGGCATGAGATTTCTCAGCGCCCGGCCGGTGACCGTGCCGTAGGTGGACGGGGTCTCTCTGG--GGACCTCGACGCTCTCTGCCCGGGGCAGCTCCTCGCCCCGCGT--GTAGGCCCGCCTGACAAAGTCGCGCACGTAGTCTTGGAAGGCGACGGGGCCCTCC------AGGGGACGCAGCGAGTGCCATAGCTGCTGCAGGGCCTCGGGGGCGAAGCACCGTCGCGCGAGCAGCAGCAGGCATGCCCGGGCCCTGGCCGTGCTCTGATTGTGGACCAGCCCCAGGAACTCCGGGTGGGGCCAGAGAGCGGCCCGAGTC-TCTATCTCCTCCCAGGCTTCCTGGAGGAAAATGAAGCCGGAGGGAGGGCCGGTGAAGCGGCGGTGCGCGTCCCCGACGTTTTGAGCCCCGGTGGCG-------GCGGTCGAGCTCGAGCCCCTCTTCCTCTCGGCCGG-GCTTCTGACCAGCCGGTAGGTGAGGACCGCGTCCGACAGCAGCTCCCCCAGGCCCCCGTCCCTCGCCAGGGCCGAGACCAGGCCGAGTC--CCGCGTAG----------AACGAGGGGGCCCCCAGGAAGGCGGCGGCGTAGGCCGGATGCGTGCCGACCAGCAGCGTCATTATCTCCCGTTGTTCCAAGAGAATGACTTCCCGGTC------TGTGGCCGGTGTAGGGAAGGGGGGGTGATTCCTGGAGGCGATCAGGGTGGCGTGCGCCAGCAGCGTCATGGCCACGATGGGGTTGTCGGCCAGGTCTTCCATCAGGGCCTTGGGGGCCGAGACGTACTCCCTGAGCAGTTCCCCGGCGTTGGCCTCCACGTCGGACCAGGAGTCCCAGTAAGAGTCGGCCGCGGCGGCTCCGAGGCGGGCGGAGGCCACGCTGGCCAGGGTCCTCGCCTCCCGACCCCGGGCGGATGGCTGG---------CCGGCCGGCGCGAGGGC------------AAAGGCCTCTGGGTTCTCCAGCACGGTGGGCATGACGTACTCCAGAAAGTTGTGGTAGACGGGGATGTAGTTGAGGGGCTCCTGGGTGTCCGACGAGACGTAGGCCGGGTTGAGGGGGTCGCACGGGGACTCGGTCTCCAGCCACAGGGTGCCCGCGTATTTCGCCGGCCCGGCCGCCGCCAGGAATTGCGCCCGTCGGACCGGCAGCGGCCCGGTCGGACTCGCGGGCGCCCTGGGTGCGAGAAGGGGCCG--GTCGCCG--------GTGTCGGTGAGGGGGCGCCTGACGAAGACGGTGGGCTGCGCCGTCTCGTAGAAGGCCAGGAAGCTCTGCTTGGCCGAGGCGTAGCGCACGAGCCTGTCCCTGA------GGAGGGCATACTGGGGAGAGCCCGCCGCCGCCCCGAGCGCCAGGCCCCTGGCCGCCTCCGCCACGATCTTGAGCTGGCGCG-GGTCGACGTGGCCCCTGGCCCGGGTGACGAGGTCCTGCAGAACGTCCTGCAGCCGGGACTCCTCCCGGGCCTCCTGGATGATGGCCTCCAGCCGGGCCAGGCGCCGTTTCCAGTCTGCGACGGTCTCCTTGCCACCCGCGACCCGCCTGGGGTCGACCGTGGCCAGGGCCAGCCTCAGCTCCTCCATGCCGTCCATGGAGTTCTGGGCCATGCTCTCGAGCTCCAGGAGCCTCTTCAGCTCGCCGATCTGGTCTTCGGCCGCCGCGGCCAGTTCCAGCCA
s NC_004367.genome 44072 2041 - 149696 TAAAACACTTCCAAATCACGTTGTTCCGGTCTACCATCAAAGCCAGTGTAGGGTTTGGGGAAGAAAAGGCTTTTTTGTTTT-----------CTTCTGCCAAGTATTGCCGCAGCCATAAGGCCTGTCGCATGAAAACTGCCAACTCTGGTGGATGGGATTCTACATAGCCTTTTATGTGGCTAGCAAAATCACGCGACACGGCTTTTCCTATTGACTTGAAAGGCTCAATCTCCCTGTCGCAGTAAAGGAGTGGAGCTGCCACGCGCACCTGACCCAAATTCTTTAAGTTAAACAG----TGGGTTG-GAAATTGAGAGTAATGTGATCTTTGTTCCAAAAAAGGCAGCTCCCACAGCCAACTCAAACGCAGAGACTTCTGAATTAAATTGATTTATGTGTGAGGATCTACGGGC-------GGGTCCGGTAGTTGGTGCTCCATAGGAGACTAGACTGCGCACGGCTGAGCCCGTTACAGCGCCATAGG--GACTGCTAGTGTCTGGCAGCACTTTTATTTCTTCAACCTGTGGAAGGG--TAGCCTCGTGTAAGTAGGCGTGTGAGACAAACATGGCCAGGAATTCCCCAAAATCCTCGTGGTGTCCTTTGCTTAGGGGACGCAGTGAGGCCCATAGCTGACAGAGTGCTTCGTGGGCGAAGCATTTCTGTGCCAACAGCAACAAACAGGCTCTCGCCCTTAAGGCATCTCTGTTGTGCACAAGGCCTAAAATCTCAGGCCGTCCCCAAA-AGTACGATGTGTAATCAACCTCTTCCCAGTTTTCAGGAAAAAATATGAATCTG---------CC-----ACCATCGGTGCCGGTCAGTGGT-TTTTGAGACCAATTTACGCTGCTGTGTGCGTAGGGTGGAG----------GGTCGGCCAGAGATTCTGG----------GGTTAGTACATAGTCTGACAG------------------GTTGATGGTCAGGTCAGAAATTGGACCACATATGCTGTGCAGTGCTTCCACAAAGGAATCAGCTGTTAAAGCGGCCTCAACAATCGCTGGACTTAGGCTAGCGACCAATGTTATCCACTCGCGTTGATTTAAGAAAATAACATTACGGTCCCATCCTTTGGCC--TTTGGCGATAGATGGGCTACGC---AAAGTGA----AGCTGCATGTGAAAACAGGGTCATAGATACCATTGGATTACCCGCCATAGACTCACACAATAACTCGGGCACCGATGTATATTCCTCCAGTAAACGTGTAGCATTGGTGCGAATGTCGGGCCAGGCTTCCCATACGGCATCTGCGGTTGCCACGTGGAGACGTGCGGAAACCACACTGGCAAGTGTGCAGTCGTCTCTGCC---GGTGTATGTTGGGGAACCATTTATAGCTGGCGCTAGAGCTCGGCTAAGTGTAAAGGCTTTGGGGTCTGCTAACACGAATGGCACTGAATATTCCACAAAATTATAAAAAATGGGTATATAGTTAAGTGGCTCATGGGTTTCAGAGGTCACGTAGGCTGGATTTAAAGGGTCGCAGGGGGAAATAGTTTCTAGCCATAATACTCCTGCGTACTTACTAGGTCCGGAGGCTGAAAGAAATTGAACCC--TGGA---GTAGGAGACCATT-------------GAACCGGGTG-AAGATGTTACCTGCGTCGCCGCATCTACATTGTTGTCTAGAGGGAATGTGACAAAAATGGCTGGTTGGAGGGTCTCATAGAAAGATAGGAAATACTTCTTGGCTGTGGCATATCTGAGTAACCTGTTTCTAATTGTTTTTATCTCATCTAGGGATGAGC------GGTTCCCTATCTGCAGCTCTTTTGTTTTGTCTATAACTGTTTGAAGAATTTGCGTAATTAAATTGGTTTGAGCCATATATGTC-AAATTCTGTAGAGTGGCATTAAGATCAGTTTCCTCTTTCGCCTCAGAGACAATTTCTTCAATATTTTGTATACGACGGTTCCACTCTGACACAGTTTCCTTCCCACCAGTAACCCGATTGTGATTGAGAGTAGACACTGCCAATTTGAGTTCATCAATGCCATCCATATTGTTATTTGCTAGGCTTTCAAGTGCCAGAAGGGGTTCCAGACTCAAGACTTCACTTGTGGCTGCCGTGGCTAAATCCACCCA

a score=21378.0
s NC_006146.genome 48710 1439 + 171096 GCCTTCTGAATCCTGGCCCATGCTTCGCCGGCCTCCCTCGCCCGCCGCTCCGTCCGCTCTCTGGCCTCCCGCTCGCGCAGCAGCTCCTTCTCCTTGCGCCCGGCCTCCAGCAGCCGCCGCAGCTTCTTCTCGTACTGCCGCTTCAGCTCTTTGTTGGGGGCGGTGTCCAGAAAGGCCTTCAGCTGCTCCTCGGAGGCGGGCGCGAAGCCGTCGGCCTC---CAGGCGCCAGGCCTGCGCCTCTTTCTGTCTCAGCTGATCGTTGTTGTCATTCTTCAATTTTTGCAGGTAACTCAGAAAGCGTTTCTTGAGCTTCCCGGGGATGAGCGTCTGGGAGAGCTGATTCTGCAGACCGGCTAGGAGCCGCAGGGCGTTCTCCGGGGCGCGGCCCGAGACCGTCGCGTCGTAGACAGCCAGGAGACCCGGGAGCAGATTCACCGCAGCGGCCGTCTCCCTCAAGGTGCTGTGAGTAGCGAAATTCTGCAAAGCCACCAGGCGCACGGGTTCCAGGGTCAGCCTGTTGCCCGTCTCGAAGGTGTGCAGGGCCTCGGAGACCATGGGGTCCAGGATACGGTCGATGCCCTCCTGCACCTCCGGGTCCAGGGCCGGTAGCCCCCTGTAGAGGTGGTCTATGCTCTCCTCGAAGGAGGAGATGTAGTTGTCGACGGTGTAGAAGGTGATGGATTTTAGGATGTTCATCAGGTACTTCTTGGAGCGCACGATCTGCTGGATGGTGTCGCGCAGGCGGATGTAGGTGGGGTTCTTGGCGGCCCCCACGATGGACCCGGCGTTGGCGATGTACTTCTCCATGACCGGGATGGTGAGGGCCGC--------------GGTGTCGG-CCAGGGGCGGCGTGGCATCTGGATCGGCGGGTG------------ATCCGGGGGCTCCT---------------------------------------CTGGG-------GGCGGAGGC-----------CACGCCGGCCAGGCCCAGCATGGCCTCGATGTCCTCCAGGATGACGCGGAG---GCGCTTCTCGTTCTCTTTGGTGGCCTCGAGCTCTTTCTGCTTTTCGGCGACCGTCTCGAACTCGGGCAGGGGGGCTATGGCGGCGTCGTCCTCCTCCACCCTCTCCAGGGGCCACGGAATGCCGGTCATGTCGCCTAGGGCGGTGCCCAGGTAGAGCAGCTCGCGGTAGTCCCGCTCGATGCTCGCGTG-CCGGATGTTGAGGTCCGACAGGGAGGCAATGATCTGGC-ACGTGTGCCGCAGGCGGGTCAGGAGGTCGTCAAAGTCCATCACCGTCGGGAGGCTGGGGTCCTCCAGGTAGGAGAGGTAGTCGGAGGCCGCCGAGGCCACTCGGTCCCG--GACGTCCGCCGTGTACTTGCGCACGTGCAAGGCCCGCGGTTTTGGACCGGCCGCCACATTGTGCACGAAGGGGGG---------CACCACCGAAGCAGAAGGGGCCCCGTACTCTATCGCCGTTAGCAGGGCCAGGAAGCGGACGTCCTCTTCGTCCACGGCGGC
s NC_004367.genome 47236 1526 - 149696 GCCCGTTGAATGTTTGTCCAAGCCGTTTCAGCATCGGCCGTGATTTTCTCCATGGCTGCCTTGGCTTCTTGTGCATCCCGCCTTTGTTTTTCTTTTCTCTTTGCCTCTAAAGATGCATGGAATTTCTTTCCATATGTTTTCTTGAGTTTGTCGGATGGAGCTGTTGCTAATAAGGTATTGACTTCTTCCATAGATGAAGGGTCAAAGGCATCTGCCCTTCTCAGCCACTCGGTCTCCTTTTGTTTCT---CCAATTGACTTTCTGTTTCGTTTTTCATTTTTTGCAGGAGTGCGAAAAGCCGCCTCTTGATCTTTCCCCTAAGAACAGCCCTCGACACATTTCGCTGAACACCTCTCAAGAGATCAGAAGCCTTAAGTGGATTTTGACCGCATCGAACTGCATCGTAAGCCGCGAGGACACTTGGGAGAAGATTGACGGCTGACACATTTTCTTTGCGGGTACTGTTTGTCGCATAGTTTTGAAGGGCGGCGAGTCTGGCGGGTTCCAGACTTACCCTGTTACCGGTCTCAAACATTCTAATTGCTTCATCTATCATGGGTGGGAGGGCTTCATCTATCGCATCTTGAATTTCAGGGTCTAAACGTGGCAGGCCTTTTTTGAGGTGGGATAAGTTTTCCTCTATTGAAGCTATAAAGTTATCGACAGTGTGAAAAGAAATCGACTCTAGAATTGAAAGCAGATATTCCCTGGAGTGAACAATTTGCTGGATTCTGTCCCTAAGACTTATATAACGGGGGTTCTCATTGGCGCCCACTATTGCTCCGGCGTTGGCAATGTAGCGTTCCATCACTTGTATAGTCATGGCCGCTGCCTGGCCAGTTGGTTGTTGGTCCGGTGGTGAGCCATCATCTTGATTAGAGATTGTGCCTTCGGTGCCTCCAGGCGCTTCTTGTACCTCCGGCTGATCTACATTATCAGATGAGGCATTACTGGAAGAGGGCGGCGGAGGAAGGGGAATAGGAATTCCAGCCATGCCCATCATGGCTTGTATATCATCCAGGATTATGACGAGCCTGCGCTGATCTTCATTTGTTTTGGACT---GGTCAGCCTGCTTTTTCCTAACCGTATCAAACTCTGGTATAATTGTGATTCCGGGTTCATCCTCCTCCACGCGTGACATGGACCATGGAAGACCACTGATGCTACTCATGGCCGTTCCTAGATACAAAAGCTGGTTGATATCTTCCTGGATATTTGGATATTCTAAATTTAGGGTTGGAACAGCTTGTAGGGTTTTAGCTGCGTTTTTCGTGGCC--ATCAGTAGGTCGTCAAACTCAAGAGCTATTGGCCTCTCAGGATTGTCTAGATAATCAAGGTAGTCAGAGGCCGCCGCGGCGGCCT--TCCTGTTGGCGTCTTGTATGTATCTTTTAACGTAGCGGGATAGTATTTTTGCCTTTTCAGCTACATTGTGAATGAAAGGGGGTGGTAATGATACCAGTTCACCAGAA------CCAGTTTCCAAAACGGTGAGCATACCCAGGAATACCACATATTCCTCATCAACCGTTGC

a score=6091.0
s NC_006146.genome 50471 827 + 171096 AGGGACGGCAGGCAGGCCGCAAGCTTCGCGGCCAGATGCATGTGGAATTCGCTCGCTCTTCCCTTGTTTTCTGATAGCATGGCGGCGAGGTTTTGGACGTTGAGCTCAGAGGTCAGGAGCCGCTCCAGGTCCCGGGTGGGCACCTGCAGGTTTCCAG---------ACCAGTCCTTTAGGAAC-----TCCAGCAGATTCAGGGCGGCTGAGCGTGACCGGCTCCTGATGAGACCCTGCTCCAAGACCACCGTCACCAGCAGATGGTCTATCGTGCTCAGGGCGTC--CCTCCGGCACTTCCCTGTTAGAGGCCGGGTCATAGACGAGGGC----CCGGTCGGGGTACGTGTGTCCGGCAATCTT--TTGAATGTTGCGCTCGAGCGGGCTAAAGTCC--ATCTCGGGCGTGGCCATGTCAAAGGTGGTTTGATAGTAG---------CGGCTCCTGGCGGTGTCCAGGCTGGTGGGGGATGAGAGGCGTTGGCCATTGTCCTCCTCCGTGAGGTCCGAATCCGGCCGTTGGAGAACACATCATCCTCCTCCTCCTCGCTGGTGGGGATATCGGAG----------GCAAAGTCCATGTCTTCTTCAGATTCTGACATGGATAGGAAAGGCTCCTCTACGTCAGACAGGTAGCGTACGAGGCCGGATCCCACGGAGGCATCTTCTCCCGATGACTGCCGCTGGACAGAAGGCAGTGGGGATGTTGAGGAAGGAATTTGTTCTGGCTCGGAGGTCTCCACTGGTGGAGGCTGAGGAGTCGCTGTAGCTGTCGGAGTGGGCTGTGGAGCCGGGGAGGCTGCTCGAGGAAGCTGTGGAGCATGGGAGGTTGCTTGGGGGGGCTGAGGAGTTGG
s NC_004367.genome 49027 728 - 149696 AGTGAGGGAATACAGGCTTCAAGTTTGGCCGATAGATGCCCGCGTAGCTCTGCTGTTTGCAGCGCGTTTTCTGATAGAGCAGCGGCGATGTTTTCCAGATGTAAGTCCGTATTCAGCAGAGTTTCTAGATCTTTATAAGGGATGAAAAGCTTCTTAGCCAGGGATAACAAATGTGAAAGTAATGGCTTTGCTGCAGATTCATTGCGTTTTA--------------CAATTACACCTTGTTCTATAACAGTAGTAATAAGAATGTGGTCTATCGTTAACAGGGCTTCGGCTTCGGGAACTTCCCTGTAGGATATTGGGTCATACACAATGGCTTTACTTGTTGCTTTGTGCGAGTCT-ATAATTTTGATTGAATCT-----TCTAAGGGGCTAAAGTCCAAATCCCAGGTGCCATCA--TCAAACGTAGTCTGGTAGTAGTTTGTTCGCTGACTCTT-----TATAAAGCTTGGT---GAAATTGCAGCGTGTTCTATAG-ACGATTCCGTGTCTTCTG-----------------ATGCACTGTCAT-------------------GATTTCGAAATAGCCCGTCCATTGAATCCAGTTCTTCATCAGAATCAGACATCGAAAGAAAAGGTTCATCTGCATCTGATA-------------------------------ACACTCTTGTTATGGCT--TGTTTGGGAGGAG-----GGGTGTGCTGGGGAGGAGGGGTGGGCTGGGGAGGAGG--------GGTG--GGCTGGGGA------------GGAGGGGTGGGCTGGGGAGGAGGGGTGG------------GCTGGGGAG---GAGGGGTGGGCTGGGGAGGAGTAGGAGTCAG

a score=23399.0
s NC_006146.genome 52200 688 + 171096 CCAGGTCGAAGCCGCTGCCGTTGGCCTCGTAAAAGTCGTACACGCCGTAGTGCTCCAGCATAAAGACCCGAGGGTCCTCCATCTCGAAGGCCTCGGGCAGAAAGTAGAGGTGGACGCACGTGTACTGGGCCCCGGGCGCCCCCACGTACTGGAGGATGTCATGCGCGTAGGTGCTGACCCTGACGTGGGCCGGGGTGCCCGGGGCGGCGTCCTTTTGGCAGTGGGGGTCGAAGAGGTAGAAGGAGCCGTCCGTCTCGATGATGATGGCCCCCGCGTAGATGTCGCATATGTAGAGGATGAACTGGGCCACCCCGTTGTAGCCGCCGTGCAGGACCTCGGCCAGGGACTGGACGACGGCCGAGTTGGAGATCTGGGCGGGAAAGAGGACGAGGCCGAAGATCTCCGCCGAGCGGTAGATGTTCACGCGCCCGCCGGCC---CTCAGCGTCACCGAGCTGGGCACGTCCGTCAGCTGGGCCATCTCGTGCCCCCTGAGGATGCCGCTCTGGCGCATGAGGGCGTCCAGCCTCGCCCCCTCGTCCAGGACATCGTCCAGCTCCGGGCGGGAGGTCAGGGGGCGGCCGGCCAGAAAGCTCTTGACCAGGTACAGGACGCAGTTGCTGACGCACTGGATGCCGGCGAAGCGGCCGAACTTGCAGTGGGACTGGTTGCACGAGGCCGTGCCCAGGAT
s NC_004367.genome 50090 691 - 149696 CTAGGTTAAAGTTGTGGCCGTTACCATGCTCAAAGTTATAGATGCCATAATGCTCCAACATAAACTTTCGTGAATCATCAAGCATGAATTCTTCTGGCACAAAATACAGAAAAACACAAGTATACTCTACCCCAGGACCCCCGACGTATTGTAGGATGTCATGAGCATAACGACTAGTTAAAACCTGAGCTGGGCTACCGGGTTGGGCATTTTTGGGGCAGTGAGGATCAAACAGGAAAAATGAGCCATCTGGCTCCACAATAATCGCCCCAGCTAGGGTACTGCAAATGTATATGATAAATTGTGCAACCCCGTTGTAATTTTCATGTAGAATTTCTGCCAGAGAGCGCACAAATGGCGTATCAGTTATCTGTGCTGGAAACAGTACCAGACCAAATATTTCGGGCGAGCGGAAGATATTAGTCTGACCCACGGGTGGATCAAGTGTAATCGCACTCGGCACATCTGTTAATTGAGCCATTTGCCGCCCCCTAAGCACCCCGCTTTGTCTCATTAGACTATCCAGGCGTGTCCCGGCATCCAGTACATCATCCAGTTCTTTTTTGGCAATCAATGGATGCCCTGCCAGAAAACTCTTTAACAGGTACACCACACAATTGCTGACACATTGAATTCCCGCGTATCGGCCAAACTTTGGATTTGATTGATTGCTGGTTGCGGTGCCAATAAT

a score=6651.0
s NC_006146.genome 53841 623 + 171096 ACGAGGGCCTCGGCCCGCGCGGCGTCCATAGCGGGGGGCTGGAAGAGTCGGGCGAAGGTGTGGTCCCGGAGGCGGTAGGCGACGCTGGCCCTCAGCGCCCCCGTTAGGGCGTAGCCCAGGTCCAGGGCCCGCTCCACGCGCTCGTTGAGCTCCTCGAGGTCCGGACGCAGGGGCTCACGGGCGTT--------TTCCCACAGGGGGTGGTCTGCGATCCCCCGGCTTTCCCTCAGGGCCGGCACCAGGTGGCGCCTCCGGAGGGCGGCCATGTCGGCGGTGGTCAGGG-----CCCACCTGGCCGCCGCGTCCCGGCACACGTCCTGGACGCCCTCCACCACGCCCTTGAGCGTCTGCAGGTCCGTGGAGTAGTAGCGGCCCCCCGTGCCCTCCTCCTCGTCCTCCTCTTTCGCCAGGGGGATCTGCACCTGCCCGGTCTCCGCATCGTACAGGATGGGGCGGGAGCA--GAGCCTCTGGGCGGCCCCGGTCAGGCGGGAAACGTCCTCCGAGAGGGTCTCGCCTGAGACCAGGAAGCGACGTGTGGCCAGGCTCAGGCCTTCCGCCGTCGTGCTGTATCTCAGGGTGAAGAGCAGGGAAAAGAGTGAGGTGGGCCAGACGATGGGTGGTGCCGCCTC
s NC_004367.genome 51461 602 - 149696 ACGATATCTTCTGCCTGCTCTACAGTAATGTGTGGCGGGAGAAAAAGCCGTTCAAAATACTTATCCCGCAGATGATAAGCAGCACATGTTCCTAGAGCTGCAGTCAGGGCGTGACCTATGGCTACCGCTTTTCGAACGGACTCGTCTATTTCCTCTAGATTGGGTCGAAGG--TTCCCTGCCGTAGGACAAGACTGCCAAATTGGATGAGTTATAACTCCCATAGCTTCTCGAAGTGCGGGGATCATT---CGTCTTCGAAGAGT-----TGTGAACTGGGAACAAAGTTCTGCCCAGCGGCTAACCGTGTCCCTGCATTTATCTTGTATGGCTCCCACTA---------GCGTACGCAA---TGTGGA--AATAGTGGTGCTGAATGATTTATTG----------TCGGATGTAATGGGGATCTGGACCTGTTCTGATTCTGCATCGTATTCAATGGGACATGAACACAGAGCGGCTG--CAGCACGGGTTATTGGGATGATATCTCTAGTGAGGTCCTGACCAGTGGTGATAAATCTTTGTGTGGATATCTTCATGGTCTCCGACAGGCTACTATATCTGAGTGTAAAGAGAAGGGAAAATAGGCTAGTTGGGAAGGTCACATCCGGTACCACATC

a score=31876.0
s NC_006146.genome 54693 1928 + 171096 TCCGGTGGCTCCCCGGGCATTGGAGGGGCCCCGTCGTAGACCTCCCAGACGGTGGCGTAAATGAGCTCGAGGGGACGGCGGGCCCGGGTCAGGGCGGCCGAGGGGAGACTCAGGTCGCTGCCGAAGGAGACCAGCCAGCGCAGGGCCGCCAGGGAGCGCGCCTTGGGCAGCTCGTTGGAGAGGACCCGGCGGAGGGCGGGCCAAATCTGGAACTCGATGAAGGCGGCCGGGAAAAATGGGCTGCGGGCGTAAGCGGGGTCCGCTCGCGCCGTCTGGCCGGCCTTCAGGGACCGGCAGTAGGCCTCGACGTCTGCCCGCG-----GGGCGACCGCCGCCGCCGCTACCGCTGCCCCCGTACCCGGGGTGGCCGGAAGCC----CCCCGGGCGGGATGGGGGCGGG-CGGGATGGGGGTCGGGGCCGGGGCCTGCCACAGGCGGCCGTATCGGACCCACAGCAGGGACCTGAGGAGTTCAGAGGACAGAACCCTGGCCACCTGCTCGTACTCGGCCTCCGGTGGGGGCACGATAAAGATGCGCAGGGGGGTGACCGCGTCCCAGGC--------TGCGGCCGCGGCGGGCGAGCGTCTCCTGTCGGCCGCCTCTGCCTCCGCCCTCAGGTACGTCGCCCGGGCGGCCCGGGCGAAGCGGCTCGTGGGGCTCGCGGTGGGCAGCAGCCGGAAAAAGTGCAGGGCGAAGCCTGACAGGCTCTCGAGTAGGGCCGCGGTCGCCTCCAGCCCCCGCCACCGCGCGCGGGACGCCCGGGGCACCGAGGCCAGCATCACGGCGTAGTCGCCCGCCGCGGCCTCGTTGAGACCCGCCGACAGCAGTACCGTGGCCACCCGCTCGATGGCCGCGGGCGAGAACGAGGCCCGGCCGCCAGCTGCCTCCTGCACGCGAGCGGCCAGGGCCTCCAGCTCCGCCGCCACGCCGGCCAGGAAGGCCTCGATGACCGAGTCCGGGGTGCCGTAGGTCTGGTCCCAGAGCAGGGCCTCGTACACGTAGTCGTAGAAGAGGGCCCCCGAGGGGTGCAGCAGCCGGAGCCAGGCGGCGTTGAAGGCCAGCACGGGCACGGCCGCCGCC----GGGGGGCTCTGCCCGCCGCTGGCCTCCGCGTACACGCCCAAGATCTCCACCGCCCGGCGGCGGGCCAGGGGCAGCGAGGCCACCACGCTGGCCAGCGACTCGGGGCGGTGGAAGAGGCCGTCCCGGCCTGGGTGGGCGGAATGTTCGCCCCCTTCCCCTCCTCCTCCTACTCCCCCTCCCCCTGCTCCCCGCTCCACCAGCTCCACGGCCATGGCCTTGATGTCCGCGGCCGTGGGCTGCTGCGTGCCCCCCGCCATCGCCG-CCCAGGGGTAGCGGTTGGTCTCGGCGTAGACGGTGACCAGCCAGCGTCCCAGAGTCGTTTTTGCCTCGTTAAAAGCGTAGAATGACAGCCCCTCCCGCGGGAAGGCGTCCCACCGGGCCAAGTAGGTGTCGGCCACCAGCTCCTCCACGAAGGCGAAGGTGGCCGCGGGCCCCGAG---ACCGAGAGCACCTCCCCGCGGCCGTCCTTGAGGATGCGCCGATACTCGGCCGCCAGGGCCCGGGTCTCGCGGACGAGCCGCGAGCCGTCCAGCGGGTCCGCGGGGGCGGAGGCGGGGCCGTCCTCGGCGGGGAGCGAGGAGG---CCAGGACGTCCAGCGCCGCCTCGAGGTGGCCCAGGCCGTAGCTGCGCCGCGAGAAGGAGGCCGCCCGGAGCAGGTAGTAGGCGTGGTGGCGGAGCACCGCCGCCGGGTAAGCGTGGCCGCTCGCGAGGGTGAGAGTATTTAAAAAATCGCGCACCAGCACCTGCTGGGCCAGATCTCCAAGTCCGAAGATCCCCAGCTCCAGCGGCATCAGCGCGCGCAGTCGGGCCGCGGGGTCGTCGCCGGCCATCAGCAGCTGACGCGTCACGCGGGCCAGGCC
s NC_004367.genome 52148 1820 - 149696 TCCTCTGAGTGCCCAGGCATGGCTGGAGCGCCATCATAAATTTCCAACATTGCGGCATACATGAGGGCCAGGGGCCTACGTGCCCTTAAGAGTTCAGCTTGGG------TTGCGTCTGGACCAAACGCCACCAGCCATCGCAGTAAAGCCTGACTGCGGATTCTAGGAAGCTCATTAGACAATATAAGCCGCAGAGTGGGTATAAGTTGGAATTTGATGAATGCAGCTGGGAAAAATGGACTGATGGCATAAGTGGCATCAGCCTGACTAGTCTGTCCCGCTTTAAGGGAGCGACAGTATTCCTCCAC-------CGCATCTTTGGTCGGATACTTCTG----TGTGGTGGCCTCTGTGGGTATGGTTTCTGGGATCAGCTGCCTTGTACCGGTGGGAGGCTTATCTGGAGGAGGGCTCA--------CCTGCCAAAGGCGACTGTACCTGATCCACATGAATGAGCGCATAAGATCAGATGTCATAGCGGCGGCTACTTCCTCATACTCTAAGGTTGGGGGTGATACCAGGAATATCCTAAGTGGGGAAACATTGTTCCACTCGTTGGGTGTGTGGCCATGGCGGG-AAATGTCC----TCAGCTGCCAGAGCTTCAGCCTGTAGGTAAATGGACCTCGCTTCACGAGCGAAGCGGCTGGTTGGACTAGCTGATGTCAGGAGGTCAAAGAAGTGAAGGGCGAATGTTGCAAGTTTTTCCAGTAGTTCTAAGGTTTCCTCTAATCCTACCCACCTACGGCGTGCGCCTTGGGGTGCAGATGATAGGAGTGTTGTGTATGTGCGGGCGGCTTCCTCATTCAAACCGTGAGAAAGTAAAACATCAAGCGTCGCCTCTATAGAGGCGACTGAAAA---GTACTGCTTGGAAGCTGCTGACTGCACATGCGTAGCCAGGCTTTCAAGTTCCACCAAGGAGCCGGCCAGAAATTTTGTTACAGCGTCTTCCGGAACTCCGTATGATTGATCCCAGAGTAACGCCTCGAAGATGTAGTCATAAAAAAGAACGCCGGTTGGGCCTAGAGTAGATAGGCAGTCCGCGTCGAAGGCCAATACAGGCACAACATCTGCACTTGGTGGTGTTCCACCCG--ATTG--CTCTGCATAGACACCTACAATTTCGGCCGCTCTACGGCGGGCTATCGGAAGGGAAGCAATAACATTCGATAAAGATTCCGGCCGTCTAAAGAGAC------GGCCGCCGTG------------------------------------------------------CTGCTCCACCAGTTCCCTAGCTAAAACATGAATGTCTTTGACAGT-------------CACCTTGATACCGTTGTCCCACGGGTATCTATTTGTTTCCATATACACTATAGTAAGCCACCGTTCCAA---CACACTACTATTGTTAAAATTAGGAAATTTCAAGCCCTCTCTTGGGAGCGAATCCCAGTAGTTTATATAGGCATCTGCTACCAACTCTTCTACACAAGCGCATGTCGCCACTGGTCCAGGATGCACATTGAGGGGCTCCC---GGGATTCCATGGCTA---GCCGGTATTCAGAAATCACACCTCTTATTCCACTTATCAGTTTGTGGCCATCTAATGGGTCATCAGTG------------------TCGGTGGAAGGCAATGAAGTTTCCAAGACTCGAAGGGCCTCTTCCAGATCTTTTACAGTGAAGCGCTGGTTTGAGAAAGAGGCCGCCCGGAGTAAAAAGTAAACATGGTGCCTTAAAATTGAAGCGATGTAGCCATTGCCGCTCAGGGACAGGAGAGTATTTAAAAATTCTCGTACTAGTGTGTACGAGGTTAAGTCTCCTAGTCCGAATACACCAAATTCTAGAGGCATCAAGGCCCGAATTCTGGCTGTGTGGTCATTGTTGGCGGCCTGTAACTGCGCCGTAACCTTTACCAGTCC

a score=134966.0
s NC_006146.genome 56748 6896 + 171096 [encoded data, 7129 characters]
s NC_004367.genome 54269 6746 - 149696 [encoded data, 7129 characters]

a score=14166.0
s NC_006146.genome 64259 830 + 171096 TTTATTGATTCAATCCAGGAACGAAAAACAGCCCCAGGGATCCCGTGCCCGGGGAGAGGACGGCCCTGACCAGCCGGCCGCAGCAGGCGCTGCGGCAATCGCGGGTGTGAGTCTCCACTGCCTCCGTCAGGAGGGAGCTCAATGTGCCGGGGTTGTAATTCTTGATGTAGTGGCCCAGGAACTCAACC-TCTTCGTATCTCCGTCTGCAGTGAGCGTTGATGTAGGCCGGGGCCACGGCGGCGTACGCTGCCAGGAGACAGAGGGGCTGTTTCACGTACGTGCCGCTCAGGGTCTCCACCACCTTGTTGTGGCGGACCGTGGCACAGGTGATGTAGAAGAGCTGTTTCACAAAGTTGTAGTCTCGGGTGTTGGGCAGGAAGCAGGGGGCCAGCTCCTTGAGCTTTGTCAAGATGACCTTGCTGAGGTTCATGGCGCAGGCCAGGAGGATGTCTTCCGCCGGGGCCAGGGGCACGTCGCCGTGGTAGGTGGTCTC---------CTGTAGCCAAAAGATTGTCTCCTCCAGCATGGCCACCAGTGTGCAGAGCCCTGCGTTCTGGATGGCCTGCATGCGAGCGTCCAGCCAGGTGTCCTTGTTCGTGGACTTGGTGAAGAACTCGCGTAGTGTTCTGTAGCTCCTGCGCAGCTCGTGTT--TGGGCTGCACCTTCTGCCAGGCTCCAATGTCCGGATGGGCGGCCACGGCCAGCATGGACTGAAGAAAGGGGTCGTGGATGGGCTCCAGGGTTAGAGAAGCCAGAGGGCTCGGCAGTGTGACAAAGGTGATTTTGTCAAGGGGCTTCACCAAGTTCACATCAAACCACGGTTTGTTGGGAAGG
s NC_004367.genome 61517 826 - 149696 TTTATTCGTCAACACCGGGAATAAAGAAAAGTCCAAGGGATGCACTATTGGGGTTAAGGATTGCTCTTGTTGTACTGCTACAAGTAATACTGAGACAGGAGGACGCGTGTTTCTCAACAGCTTGAGTGAGAGCAGAATTCAGGAGACCGGGCGTGAATTTCTCAATGTAACAGCCGAGAATGTCAATTAGCCTTGTGTTTTT-TACACACCTGGCATTAATAAACCCGGGAACAACGACGGCGTAGGCAGCAATGAGTCCAAGTGGCTGTTTTACAAGCGTACTGCATGCCTTTCTAACAGCGTGATGGTGCCTTACTGTTGCGCATGTTAGATAATGCATGTTCTTCACAAAATTGTAGTCAGTCGTGCATGGCAGAAAACAGGGAGCCAGTTCCCTCAACTTCACAAGTAGAGTTTTACATAAGGGCTCAACCGGTGCCAATATAATGTCCTCGGCTGGTGCGAAATAATCCTC------------GGTTTCACACAACAACTTAAGCCACACAATAATCTCCTCCAACATGCCTGTCAGGGCACATAGTCCTGAATTATAGACAGTCTGCCGGCGAGCGTCTATCCATACCTCTTTGTTAGTAGACTCGCGCATAAACTTTTGCAATTCATCAAAGTTCC--CTTTGATGGTTTTCATCGGCTGCACCTTTTGGTAGATGCTTGTGTCAGGAGATGCTGCCATACTTATGACTGCATGAACAAATGGGCCCGGTACGGGTTCTGGGGTTAGGCTTTCAAGAGGCGATGGTAAAATTACAAAACTAAGTCTGGAAACGGGGGCCATTAGACGCCGATCAAA-CACAGGTTTCTGTAAAGG

a score=63172.0
s NC_006146.genome 65969 3073 + 171096 ACGCTGATGGAGAAATGGGCGGTCGGTTGATTTGCCCCACAGCGACCGGCGAAGCACTGACTCATAAAGGTGACCGTGATGGCCTGGGGCGTGTAATACAGGACCAGAAACACCCTCACATTCTTGGAGCTGGTCCTGTGGTTATGCCTCAGGCACGCAAAGTTCCTGCCCCGGCCATGGCACACCTGAACTAAATTTGGCCCCGTTTGCTCAAACGTGACATGGAGGAACTGGGGGAATTTGTCCTCGGGCACAGCTGTTGCCAGGGTGCTCATGACCGAGGGCCAGACGCAGGAGCTGACCCAGGCGACGAGATCCAGGCCCA-----GCTGCCCCTCTATCGCGGCGCAGGCATTCTCCACGGTGGGGG---GCAGGGTCTCGCGGGTCCTCCTGATCAGATAGTCGCGGCCATCGTCGGAGACGTGGTAGCAGAAG-GTTTTGGGAGCTGGCCAGCCCACGTGCAGGGAGTGATGCAGCAGGTTTTGAATGTTGAGGGCGTTCTCCACATAGCTGCGCTTGTCCTCCTCTTCCGGGTGACAGACAAAGAGCCGCAGCTGCCTGCCGAGGGCGCCGCCCCTGTCCACCTTGTAGGTATGCGGCAGCCGGATGCACCGGCCGGCGTGATACACGCCGCTGTCAAACAGGGGGGCCCCGATGTCTTTGATCTTGTGGCGCAGGCGGCGCAGGCAGGCCGTGAGACCCATAAGTTT-CTGAAGCACGCAGACGAACCCCTGCACAGCGCTCGTTCCCACGATAGCATGGCCTCTGGGTAGGGGGGTGATGACCCGGAAGCCCAGCTTCCCCGTGCAGATGCAGAAGGGGAGCACGTCTTCCATGTTCTCGGAGTCAGGGGGTGGGCATGCCGATTTGAAAAAATAGACGGGGTGCGACCTGG--ACACCGGGCCCAGGCGGCGCATGAGGCGGAGTAACTCGCGCCTCACCGTCAGGCAGAGGTCATAGATCTCCTCCAGCGTCCAGGGCGCCCCCCGGGTCTTGAGATCCAGATCCAGGACCAGGTTGCAGACCGGGAGCCTGGGATTGAAGTACTCGTGCCGGGAGACAAAGAGCTGCTCGCCCAGGCTGTTCTGGGAAAAGTAGGATGGGGTGTAGGAGATGGCCCGGGTGAGCCGCGTGTCCGGGAGCCGACAGTCGGCCGGGACGGAGACCA--CCTCTGCCAGACGGGCCGAGAAGGGGTCGGCGGCCACCATCACAAAGTATCGCCTGTCCGCGAAATGGCAGAGGAAGACCGGG-AGCCGCTGGCCGCTCCTG--AGCGCGGCGTCCGGGAGGAACTGCTCCTTGGGATTCCACTGGCCGTGGCCGGTCGCCTGGCCGGCCAGGCACAGGAAGCCACGGAGGCTGGGGGGATAGGCGGGCCCCTCCTCCGCG-TGCCAGCTTGCGAGCTCCGCCAGCTCCCGGGCCACGTCCGCGCTGAGCCCGGCCCAGGCCCGGGCGAGCCCATCCTCGGGGTCCGGGTCCCACGAGTACGGGGAGGGGGGCTCGGTGCGGATGTTCAGCTTCTGGACGCGCACGTGCTCGGACAGGTAAGTCTCGCGGGTGAAGTAGGTGCGCATGTGCTCCGCGAAGCCCCGGTCCAGGAGCGAGG---GGAGCACGACGCCCCCCACTGGCAGGCGCCCTATCTCCCCCACGCTCGTTATCCGAGAGTATCGCTTGAAGGTAGCCTCGTTGAAACACTGCGCGTGGGCCAGATAGACGTAGCGCACGAGGTCGG---CCGAGGCCAGTGGAAGGCGCCCCCTGTAGGCATCTATCGTCCTAGCCACCGCGCGGATCTCGCGCGAGTCCCGCCGCAGCTTTTCGCGCGCGAAGCGGGCAAAGGCCTCGGTCCGCTCCGCCCAGACGGAGGAGCCAAAGACCTCCCCCAGCTCGGCCAGGGACGTGACGGCGGCCAGGCTCTG-CCCCGCCTCGGAAG--TAAACAGCTCCGTGAGGTGCGTCAGCGTCTCAATCG------TGCAAGGAATGCCCCAAAAATAGTAAGCGGCCGAGACCAGCACGAACTGGGCCTCGTGGGAGCCGAAGGTGCTCAGGAACCACCGGGCAGAGACGTTGACCCTATAGATGCTGCGCAGGCAGCCCACGATCTTGGGGCGCAGCCACGCCACACGGCCCCTGGC--GTCCCCCTGCGGCTGCTTCTTGGCGCTCAGTGTGAGCAGCTCCACGAGCGGCGCGAGCAAGCGCAGAGCCCCCGCGCGATCCAGGTGGGCGGCCAGCCGGT-CCGCGGTGAGCGGCGCCACGCCACGCAGGAAAGGGGCTGCCTCCTCCCCGGGCAGGCGCAGCGTCAGGACGCGGGCGCAGCGGCTCCGGGA---GGTCAGACGCTTCTTGGGGAGGTGAAGCTGCAG---------TTCCACGAGA-GATCCCGCCACGCGGTGGAGGGGCGGGGCGTTGTGACATAAACAAAACAGGCGGAAGCCCTCCTCGGGCCGCGAGAGGATGGCGTCGAGGACGGCCTCCGCCGTGTCAGTGTTGGTGGCAACCAGGGCCTTGATGACGACGGGGGTGGACATTATTTAAGACGG-GGAGCGCGCCTATGGGGGGTAAACAGAACGATGGCCTTCTACCTCCCCGACTGGACCTGCTGCGGGCTATGGCTCTTTGGCCGCCCCAGGGACAGATACCACCAGCTCCCCGAGGACCCGGAGACCTTTGAGTGCCCGGACCGCTGGCGAGCCGAGATCGATCTGGGCCTGCCCCCGGGCGTGCAGGTGGGCGATCTGCTGAGAAATGAGCAGACGATGGGCTCGCTGAGACAGGTTTATCTGCTCGCCGTTCAAGCCAATAGCATCACGGATCACCTGAAGCGCTTTGACGCCGTCCGCGTCCCCGAGAGCTGTCGCGGGGTGGTGGAGGCCCAGGTGGCCAAGCTTCAGGCGGTGCGCTCTGTCATCTGGAACACCATGATCTCTCTGGCCGTGAGCGGCATCGAGATGGACGAGAGCGGGCTCAAGGCCCTGCTGGACAAGCAGGCTGGCGACAGCCTGGCCCTGATGGAGATGGAGAAGGTGGCCACCGCGCTCAAAATGGACGAGACCGGGGCCTGGGCCCAGGAGATCTCCGCCGTTGTCTCATC
s NC_004367.genome 63008 3062 - 149696 ACATTAGTTGAAAAATGGGCGACTGGGCGATTTGAGCCGCACCTGCCAGAAAAACACTGACTCATGAAGGTCACAGTGGTTACCCCGGAGGTGTGGTGCAACACCAGAAATATGCGCACACTGCTGGCTATGTTGCGATGCTGGTATCTCAGACATTTGAAGTTTTTTCCGCGGGGGTGGCATACCCGGACTATATTGGCCGCTGTTTGTTCGAATGTTACACGCTGAAATTGGGCCAACCTATTGTCTTGGATGGTTGACGTCAGGGTCGTGTATATTGTGGGCCATACCTTCGCTTCCACCCATTGGGACAGTGTTAGGCCCGTACTGGTTTCTATTTTTTCT--------GCAAAATTCAAGGAAGGGGCTGGAAGGGCATCTTTGACTTTCTTTGTGATAAAGCCTTGCCCTTGGTCTGAAATATGGTAACAAAAGTGAATTGGCCGC-GGCCACCCAACGTGCAATGAGTGATGTAGTAGATTTTGTACGTTCAAAGCATTTTCTACATAATACCTCTTGTCATTTACCTTGGGATGGCAGACGAAAAGGCGAAGCTGCCTTGTTAGAACACCACTCTTGTCAACCTTATATGTGTGGGGAAGTCTTATGCATCGTCCTTGGCTGTATATGCCAGCATCAAAAAATGATTCCATGCTGGAT---AGTTTATGCTTCAACTTCCGCACGCGTGGTGATAGACTGACCAGTTTGCTTAAAACTGCA-ACAAGACCCTGCATCCCTCGCGTTCCAATAATTGAATAACCTCTAGGTAGGGGTGTAATAACCCGCAAGCCTAGTTTCTCGCGGCAAATGCAGAATGGCAGGATGTCTGCCATATTTTCACAATCTGGAGGTGGGCAGGCTGATTTGAAAAAGTAGACGGGGTG--GTCTGATTCTACTGGACCTATACGCGAAAGCATTTGCAGTGAAGCGTGGCGTACAGCGAGGCATAACTGGTAGATATCTGTAACACTCCA---CATTTCCACAATCTTCACATCCATGTCCAATACCAAATTACAGACCGGGAGCCTATGGTTAAAGTACTCATGACGAGAGACCAAAGACTGCTCCGCCAGTGTATTCTGTGTATAGTAGTAAGGCTCATAGGTCAGGGATCGAGTTAGCATAATGTCAGGTATGTTGCAGTTTTCTGGTATGGCGATGTGTTTTCTCCAAAACTGACTAAT--GTTGTCAGCAGCTACTGTCATGAAGTAATGATGTTCTAAAAATTGACATCTAAATACCGGCCAGCAGCGTGTTGTCGTTGTTAGGGTTTTAACCTCTACAAGGTCATCACGTGGGTCCGGCACTCCGGGGCTAGTTTTCTGGGAGGCTAAACTGAGCATCCCGTGGAGATTGGGGCCATGGTGTGG----TGTTTCACGGTTCCAGTTGGCTAGTTCCATTAAGATCGCCATTACATCCCTACTGAGTCCAGACCAGGCAACAAGTAGCCCGTCGCATGGGTCTGTATCCCATGTGTAAACACTGGGGTGGCAGAGCTTGACTTTAAGGAGCTTGATTTTAACGTGTTTTTCAAGGTAGCTTTTTTTGTTAAAGTAAGTCCTCATGTATTCACTGAATTTTGAATCTAACATTCTGGTAAGTAGCCCATTAACCCCCAACGCTGAGCTC---AAGTGTGGTGCGCTCGTTAAGACAGAATAGCGTTCAAAAGTGACTCGGTTAAAGCATTGAGCATGTGCAGTGTAAACATACTCTACAAGGCCAGTATCCGAA---AGTGGCAGTTGACCGCGGTACTTATTGATCATGGCTCTTACCCGGCACATTTCCATGGTATCCTTATTGAGCTTTTTTCTTGTAAACGCGGGAAAGTAATCAAGATCCCTAGTCCATTGAGATGTGCCAAAGATCTGGCTAAGTTCCGCGCATGATGTGACCGCCGCTAGACTCTGACCTTGATCCGGGTGGACAAAGAGTTCTGTTAACTGTATTAGTGTTTCCACAGAGGCCTCGCTAGGA------TGAAAATAATAAGCAGTAGTAACCAGGACAAAGGTAGCTTCCCTGCTGCCGAATGTGCTTATGAACCAGCGTGCGGAAGCATTAGTGCGATACATCCGCCTGAGAGCGGATGTAATTTTTGCTCTAAGCCAA--CAAATGGCGCCGTACAGGTCACGTTGGGGATTTTTGTTGCCG---AGTGTCAAAAGTTCTACCAGGGGCTTAAGGGACCTAAGGGCTTTTGTCCTATCGAGGTAG-CGACGGGCTGATGCCGTGTCCATGGGCTTTGTGCCACGTAGAAAGAGCAGGGCTTCTTGGCGCGGTAGCCTTAGTGGGAGAATCT---CGCTGCATCGCTGGGACTTGGTCACTCTTTTGGTCGGCAGACAAAGCCGGAGGCTAACCTCTTCAGGGAGATGAGACTGTCTTTCTATAGAGG-------CATCATGACAGATACAAAATAATGTCGCGCAGTCATTGGGGCGCGAGAGGATAATATCCATCACAACTTCCGCCGTATCCGCATTCGTGCTGAATAGCGCACGGATGACTTCACCGGTTGCCATTATTTAAGAAGTCTAAACGTGTATAGAGCTAGCAAATAACGATATGGCAT---------CCGGATTCACCTGCTGCGGGTTGTGGCTCTTTGGAAGACACAACAACTCGTACAGTAGGATCATAGACAATGTTGAGGATTTTGAGTGCCCTGACCGATGGCGGGCAGAAATAGACCTCGGATTACCACCTGGTGTGCAGATAGGTGACCTTCTTCGCAACAACCAGAGTATGAACACGTTACGGCAAGTTTATTTGCTAGCTGTGCAATCCAACAGCATCACCGATCATCTAAACAGGTTTGATGCAGTGAGCGTGCCGGAGAGTTGTAAGGGGGTAGTGAATGCTCAAATCACTAAGCTGCAGGCTGTGAGGTCTGTTATATGGAACATGATGATCTCATTGGCTGTGAGTGGTCTGGCCGTCGAGGAGGAAGGATTCAAGGCTCTCCTAGACAAGCAGGCTGGAGATAGTCTGGCACTTATGGAAATGGAAAAGATGGCTACGGCACTAAAGACGGACGATACAGGCGCTTGGGCCCAAGAATTGTCCACATTTTTGGCATC

a score=26290.0
s NC_006146.genome 69235 1957 + 171096 GGGATACGAGGGTGTCATTGTCCCGAGGAGCCAAA-CCCCCGCTGCTCTCTCCCCCCCTCTAGCGCCGCCCGTAGCCCGTTTCCCCCCAGGGCCAGGTCCGGGTCCTCCTCGAAGATGCAGCTGGCCCACCTAAAGAGGGTTCTGGGGCCCAGTACTCTCGCGTCGCTGTGGGGACTGTAGAAGGAGGTCAGGTGGTGTTTGTGGAGGTAGACGAGCTGGCAGAAGCGCCGGTACTTGTTGAGGAACACGGTCTGCTCGCCAAAGTTGGTCAGGCTGACGCTGACCCCACCTCTGCGCCACCTGCACGGCTTAACCAGGATGCCCTGCATGGCCAGGCCCGACCTGCCAAAGATCGTCGGCCTGTGGTGAGGAATGGGGGGTGGGGGCATTGACAGGGTCACGGAGACCGTCTGGTGGGGGAAGATGGCCA-GGTCCTGGGGCAGCGAGACGTCCAGGCCCACGTCCCCGGGGTACTGGGGGCGGCTAATGGGCCCGCGGTCCTCCT-------CCAGCTGGGGGGTGGCATATCTGAAGGCTGCCAGGTGGATCTTCAGCTCCGAGGGGCGCAGCGTGGAGTTGTAGCGGCGTTGGTTCTGAAGGATGAGCCTGAGTTCCCCCGTGTAGCCGGGATCGATGATGCCCACGTGGGACGTGATGGGCCGCGAAGTGCTGCCCCACAGCATGAGCCCGTGGCCCTCGGGAGGTCGGGCGTAGAGGCCCAGGTCCACGGCCGTGGTCCTCATCGGGCGCAGCAGGATGGTGGTTTTGTTGACCAGGGTGAGCCGCCCCGCGCTGGCCTGCTGGAAGAGGAGCTTGTCATTCTGGAAGGCGTAGCGTATGCGTGGACTGGCCTCCATGGTGATG-----------------AGCTAAACAGAGAGGGACGGCCGTGCTATATATAAGAGCCTCAGACCCGACCGT-----CCGCACTGAGAAATGGGG--AAGGACCGAGGGAACCCGTTTGCTAAGGCTGTGCCACTGATCTTTGCCGCCTTCGCCTGGCTCCTGGCCGGGGCGCTGGTGGC--------CGGCGA-------------------GGCCGGTCCCACACCCACCCCCGCAGCGCCGGGTGCCGAGGGCCGCGAGC--GTTTCTACTCCTACCAGTGTAACGCGGACACGTTCTCTCCCTCCCTGACCAGCTTCGCGTCCATCTGGGCGCTTCTGACGCTGGTCTTAGTCATTGTGGCCTCCGCCATCTACCTAATGTACGTCTGCTTTAACAAGTTTGTGAATACGCTGCTGACTGATTAGACGGGGGA---TATTTAAAAGGGCTCGCATTCTTGGCCGCCTGTACTTCTTCTCTGCTCGTTAAACCAATAGCATGTCGGCC----CCTCGCAAGACAAGAGTGCCTTCTGGCAAGGGGATGGCTGAA---ATGAGCGTGGAGGACATGGCTGCCCGGCTGGCTCGTCTTGAGTCTGAGAATAAGGCCCTGAAGCAGCAGGTGCGCAGGGGGGGAACCTGTGCCTCCACGGCCTCTGCTGCCTCCGCCCCATTGCCCCCA---------------CCAGAGCCGCTCACACCCCGCCAGCGGGAGGTGATGATCACTCAGGCCACGGGCCGCCTGGTGTCTCTGGCGATGCAAAAGATCGAAGACAAGGTGCGGAAAGCCGTGGACGGCGTGAATACCCGCCCGGAGATGGAAGACATTCTGAAAAATCTGACCGTTCGCCTTCAAGTCTCTATGTCTGGGGCCAAGGGCCAAGCGGGCCCG-AGTGAGGGAACACGACCGCGAGAAGCCGCGGACCCCGCCGCCTCCCGACGTGC------CCGCTCCCGATCCCGAGGACGCG---AAGTCAAGAAAGTGCAAATTTCTGATTAATAAATCTTTATTGACTCTAAACAGCGGTTTCAAATTCATCA-TCATATGGGGG--GTGGGTGTAGGTATGGAT---TCTGGACGAGCTGCGTCGGAAGGCACAGTCCGATATGACCAGTAACAGCAGAAGAGTCAGTACACCCAGAGAGGCCCATTGCAGCACTA
s NC_004367.genome 66462 1953 - 149696 GAGGCACCCAGGCATCATTCACCGGAGGAACCAAAGCCTTTGTTACTTCTATCTCTGC-------CAGTCCGTGGCGCAGATTTTTGCAA---TAAATCGGCTTCCTCCCTAAAGATACATTTAGCCCAAGTAAACAGAAACTGAGACCCCAGGCAGCGGGTATCACACAATGGATTAAAAAATGATGTAAGATGTTCCTTGTGTAGATAGACTAGTTGACAGCAACGGTCTCCTTCATTCAGAAAAACTGTTTCTGCGCTATAATTAGTAATACAGACATCTGCTCCGTCCCTGCGCCACTTGGTCACTCTAACAATTAACCCCTTACAGGCGAGACCTGACCTGCCAAATATCATGGATCTGAAATGGGGAATCTTAGGAGGTGATCCAGACAGCCGTATCGTAATTGTTTGTTGCGGGAAGATGCCAACAAAACTCGGACA-TGAGACATCAAGTCCCACGTCCTTTTCATACTGGGGCTGATTAATAA-----TGCTCCCCTTAGGCACATCTGTTGGTGTGTGG--TACTTGAAAGCCGCTAGGTGGACGGTCAGTTCACCGGGCCTCAAGGTGGAATTAACGCTGCGTTTGTTGTGTAAGATGAGTTTGAGCATCCCAGTATAGCCAGGATCAATAATTCCGGTGTGGGGTGTTACGGGTCTGGTTGTAACACCCCACAAAACTAACCCGTGGTTTTCCGGAGGCTTGGCATAGAGACCCAAGTCTAGAATACATGTCTTGAATGGTCTCACCAATATTGCAGTTTTGTTAACTAACGTAAGGCGAGTTG---TGGCTGGCAGAATCAAGAACTTGTCACTTGAAAACGCATAGTTAACGCAAGGTTGCGCTGACATGATTACGTCAAGGACACGATCTGTGGCTGAAACTAG----------GTGGCATATATTAGAG----GGACCCGGTCGCATAAATCTTACCAAGCCTTGAAGTTAAGGACTAAGAATGGCGACTCACTGGTGCCTCGC-------TTGTGCCGTCTTGTATTCTCTCCTTGGGAGTACAATGGGCACTAACTCTACACCGACATCCCTTCTGCCTTTATTGGAGGATCTAACACACGACACACCACCTCCAG--ACAAACAGCCACTCCCTATCTTTTATTCATACATGTGTAACGCTGATACATTCTCACCGTCGCTCACAAGCGTTTCCTCAATTTGGGCCATGATGTCAGTTACCTTGGTTATTATAGCCTCCACCCTCTATTTGATGTACGTCTGCTTTAACAAGTTCGTGACTACGATGCTGAATGACTAAGTCCGATAGCCTATTTAACGAGG----------TGGGTGACAGCGATGTT-------------------CAGCATTCCGGCCATGGCCTCATCTAAGAAG-------TC---CAAGGGTACAGCAGAAGGCATGTCCATGGAAGAACTCGTGACCCGTCTGACCAGACTGGAAATGGAAAACAAGACTCTAAAAAATCAAGTG----AAGAGCAAGTCT-------CAGAGC----GCTGACCCAATACAATCACCACCAGGCGGCGGCAGAACCCGAGAAGTCCTAACGGCCCGCCAAAAACAAGTTCTGATAACTCAAGCTATCAGCCGCCTGTCTTCACAAGCCATGCAAAAAATTGAACAGCGTGTCGTGGCAGAAATGGAAGATGTGCGCACCCGAGATGAGGCTGAACAAAAGATACAGTCACTGACTATACGAATACAAGTGTCTATGAGCTGCAGCAAATGTGGCACTGGCCCATCATCTACCAACCCAAACCCACGCAGCC----AACTCACAGTCCAAACCCGTACTAGGCACCGTTCAAAGTCACGAGGCCGAGATTAAATCACATCAATGCGAGTCACGCA--AATAAACTTTATTTCAATTTAAACCTCAGTATCAGAGTCATAATTCGTATTGGTAACATACGTGTACTTATGTAGGTATCTAGATGG---GAGGCGAACTGTGCAGTCTACCAACACTATGACTAGAAGTAGTGCAAATACTGACAACGCGGACCACTGGAGTAATA

a score=3842.0
s NC_006146.genome 72655 753 + 171096 GGGCTTGCCGGGGTTAGAACCCCGGCACTCGCAAAATGAGGCTTGTCTCCATCGCATTTAATTGCAAAGTTGTTGTTTCCCGGCAAAACTGGTGAAATGGGATCTCCCTCATTCCGGCACA--------GCATGTCAATCCCCTCGCTTGTCATTTCCATATGTAGAGAAAATTTGGTCGCCAGAGGCATTGTTGGCAAGCTTATGGGAACTGATATGTCCATTCCCTGTGCCCTTACCACAGCTGTTATATTGGTAGAATTACAGTGGTTCC---ACACAACA---GGGGGCATCTTCTTTGGTATAAGATAGACGGGTTCTTTCATTTGAACTCGCTGGCACCACAAAATGTCAAATGCGTCCAGGAAATAAATGTATAGAGCTTCC-----ATGC--TAACGTGCTCCTCATCCCTACTGACATTAATTGGAAATATGATGGAACGCATTGTCAAAGCCATGGTACGAGCACCGAGCAACTCAAGGGAGAAGAGACTAGTAACATTTTCGATGCCACCACTGGCATGGAGTGGTTGGTAAATGTTTTGGGTAATAGGGGTGATCGGTCCAA-AATAGAGATCCAGATGCCTATTAG-------CTTCACCAACCTTGAAGACGATAGAGATGTTTACATCG------GCAGTGCAGACCTCACACTTGGGATAAAAGGGGAACTGCAGCATCTCTATATTGAAAAATCCAGGATCTTCACCAGCAAAGTGGAAAACACTCTGGAGGGTGTATTGACATAACAGAAAAGCCGCTTCCATTGTTTCA
s NC_004367.genome 69623 752 - 149696 GGGCTTATTGGTGTGAGTATACCACCACTCGCGAAGTTTGGCTTGTCCCCCGAGCAAGTGATAAAAAAGGTATTGCTTCCTGGTGCAATTGGTGATAAGTAGTTTTCCAAGT-----CGCAAGTTTCGTGCATACCGTTCCCGCCGAGTTCCAATCTAATTTGAAAAGAGGATTCTTCCGGT-TCGGCATCCATTGTGATATTG-----ACCGTCCAATCCATTGTCTGACCGGTCACCTGCGCTGTTGATGAACTTGCGTTGCAGTCATTTTCGTATGCAATACTCGGCGGGATTAAATTGGGATAGAGAACTATTGGGTCCGTAATGTTAACCAAGTGGCATC---------TAGTTACATCCATAAAGTC----TGTAAATCTTACCAGAAATGCAGTTACCGGTTTGTTGCCTTCACTCCCGCTTACCGGTGACTGGTTAACGTCTATAGTAATGGCCATAAGCCCCCCACCTAGGAGCTCCATGACAAACAATCTATCTGCCCCATCCTTTCCACCTGTCACATGTACAGGAGTATAGATGCTTTTGTT-----------CTGGTTCACCAACAGTGAGCCAAAGGCAACCTCGACCGTTTCTGTTTCAGTCCCAGATCCAATAATGAATGTCACATTGAGTTTTGGGTCACACGCCCGGCAGTGAGGATAGAAAGGAAAATTTGGCAACTCCACATTTAAAAATCCAGTCTCATCAGATGGTAGATTCACAACACTGTAGTAAACATAGCTACATAGCAATAGTGCGGTCTCCA-TATTTCA

a score=10770.0
s NC_006146.genome 83246 891 + 171096 ACTAACACATAAACAGGGCTTATGAAATGAACACTCGTGATGAGAAACTGGAACTTTACTAGATTTACTGACATAAGTACAATGAGAGCCAAAGATCTGATAAACTTGATAATTGCCCCCATCTAATGATGTCCAG---------TTCCCCTCTCCTACCTTGTACACTCCAACCCAAAGAGACTCTGAAGCTTTTAAATTTCCAGTTACCACAGGAAGGATGTTGGCCGTTGGCCCATAAAAATAAGTGCACTCATATAGCTCAGCACAGGCCTTAAAACATCCATCCCAGGGATGCTTCTGTGGGGTGAAATAAAAGCAGCGCTTGCTAAATGAGAATG-TGTACTTTTGAGTGTTGCAATATGTGCAGTTAGGTTTGGTGTAATTCTCAGGT----ACC-----TTGAATGTGTGCAGGGTGGGTTTCCAATGTGGAAGGTCTATCTCTGGCTTTCCATACTCCTGCT------CGGCTGTCTTGTTAAAGTC----AATTGGTGG--CGGGGGCTCTGCGGGCCAGACCTCCACCTTTGGGTTGGCCACCCAGGTGATGGCTGCGGCCGCCACCTGTCCTCCTCTCACCCTGGGTGGCAAATAGTATGCCAGGAGGAGAACAATAACAAGGGCCAGGGC-------------GGTAAACAGAGGCACCCTCAC-----CTGCTTAAATGAAACCATGGCAACAAGTTCAAAGCATTCCAACAGGAAGTCATTTATTAATATTCCATTAGTAAACGGGGCGTGATGCAAGCGGGGTTTCGATGGAAGAGGGTAAAATTATATAAGATCTTCATGGATAATGTCTGGTGTCCGGGGGATAATGGAGTCAACATCCAGGCTTGGACACATCTGCTTCATCAGGATGCGTAGCCGTTCATTTTCCGATGATTTGGAGGCGGCTACCTGTGTGGAAAAAAA
s NC_004367.genome 73143 870 - 149696 ACTGGCGCATAAGCATTGTTTGTGAAAGTTACACTCATAGTGGGATGATGGGCCTTTGGCCTTATTCCAGATATAAGTACAATGTGAACCATAAATATCATCAACCAGGCAATTATCCTCAGTGAGCGACTTCCAAAGGGCGGATTTCGAGTCCC------TGTAAATCCCAACCCATAAAGACTCCCCATTCTTTAAATTCTTCTGAACTATAGGTGAAGTATTTGCATTGGGCCCATAAAAAAATGTGCAATTGTGCAGTTGGGCACAAACAGAGAAACAATGTTCCCATGTGTATGTTTGCTGTGTAAAATAAAAGCATAGATTTTTAAATGAAAACGTTGTGACCCTG-GTGTTGCAAAATATACAATCTGGC---------TTCTCAAATCTGGACCCAAAGCTAAATGTTTTAGGCTTTACAGTCCAGTGTGGCATATCTATATGGGGGCTTTCATTCATCGGTTTAATCATAGTTGATACATTGAAGTCCAAAAACTTGTAATTTGGGAGATCTACAGAAGGTTGCTCCACCCATG----------TTAGATATTGCATGCG--------------TCCAATAAATCTGTGACTCATATAATAGGCCGAT------ACAATGACCAAAGCCAGCACACACACCGAAATAAGTAGCCAGGCAAACCTACACGCGTTTTTCCTTATAGTCGCCATAAC-ACAAACAACAGACATGATCCGAGTAAG--ATTTATTAATATT--GTAAAAAAGCATAGCATGATTTAAT------------------GAGTTAAATGGT-TCAGTGGTTCGTGGTATCCGGCAGACGTTGAAGGTACTATGGACTCCACATCAAGGGTAGGACACATTTGACGAATTAACACCCGAAGTCTATTATTTTCTTCTGTTTTCGCGGCAGCAACCTAAATGAAAAAGAA

a score=4291.0
s NC_006146.genome 84230 115 + 171096 CTCACGGT-----AGTGCTGCAGAAGATTCTTGAACCTGGCTCGGCATTTTCTGGAAGCCACCCGGTTCTTGTAACGCTTTATTTCAAGTTCAGAGCCACACTCGTCCAGCT----------ACAAGCAA
s NC_004367.genome 74229 130 - 149696 CTCACAGTGCGAAAGTGCTCGAGCTGATTTCTAAACTTTGCTCGGCATCGCCGGGAAGCCAGGCGGTTTCTGTATCGTTTTCTCTCTTGGTCAGTCTTACATTCTTCCAGCTTAAAAAAATAACAAGCAA

a score=6238.0
s NC_006146.genome 85312 279 + 171096 GGTGTCAAAAATAGACAACCCTGTTGAAAGATGCATGGCATGTAGCAGACACTCATCATTTAGAAATGTATCTAAGATTTCATTAAGTTCGGGGGTCAGGGGGGAATCCAAGTTTAAATCCTCTGTCATGGTCTCTAAGGTGGTGGCCAGTTCGTCCAATTGACCACAAGGGGGC-----------GTGTGGTCAAGAGCCAT-------------ATGTCCACGTTGTGCAGCCCCTTCCTTCTGGGGAATGGCAAGTGTCACCATTTCCCTCAGGGCCTTCACGGCCTGGCTGGTCTCCTC
s NC_004367.genome 75186 279 - 149696 GGAGTCAAAAATGGATAGCCCGGTGGCCAGGTGCATGGAATGCAACAGGCAGTCATCTAATAGAAATGTATCCAGCATTTCACTGATGTCCTGCGGCAGTGGGGAACTTAGGGGGATTTCATCAGGCACCGTTTCCAAAACCTTTGACAGTACATCTAAATGGCCACTAGGTGGCTGACAAGTGTTGTGTTGGCTGGTCCCATCATCCAAACTCGGATTTCCA---TGTCCAGCCGCTTC---------------------TGCCAACTCCCTGAGGGCACAAACGGCACGCTCGGTTTCATC

a score=3025.0
s NC_006146.genome 85738 36 + 171096 GTTGGCCCACGGGGACCCTGGTGGATGAAAGGGCCT
s NC_004367.genome 75621 36 - 149696 GTTAGCCCATGGGGACCCGGGTGGATGAAAGGGCCT

a score=41942.0
s NC_006146.genome 86345 2356 + 171096 AGCAGGCACGTGGGCAGCACGGCGCTCACGTAGCTCCTCTGTCCGGCATGGCTGGAGTAGGAGGCCCTGGGCAGGGTCTTGATCAGGGCCCTCACATCCTTCACGTCATCCGTCAGCTGGCCGGTCTTGGATGAGACCATTGTCTGGAACATTTCATCGAGAACTGGATATGTGAACACCCACTTGCAAAAGGCCTTGAACTTGGAGCTTAGGAGGCCTTCCTTCTCCATCCTCATCATGTGTTCAACCACCTGCCTACCGGAGGCCATGATGGCCGCCCGGTCCACGCCTAGCACCTTGCTGTAGGTGTAGGCACGCACCCGACAGTGTTTCAGGAGCTTATACATGGCTGTGCCTATGGTGGCAGGGATCATCACCCTGTTGCTGGGGGCCTGGATGAAAAATCTGTCTGTGAGCACAATCAGGTGATCTAGCACATACCGCATCACAATGGGGCACGCGATGGAGCAAGCATCGCTACCGGCATTCTCGGCCCGTCTCCTCACCCTGTTGTTTCGGAGGATGGACCAGAAATTGCAGATGTTGAGCGTGGCCATGAGCCCGCCCCATTCTCGCCCGTGGGCCTTGGCATCATTTATAAATGCCTTGCATATTTTGTAGGATCTCAGAGTAATCTCCACGCTCCCGGCTGTAAATTCCTTGTTCAGGACGTTACAGTAGTCAGAAATCAGAGAGACCAGCTGCTTTTTTATCTCGGGAGTCAGTTTCAGGAAGTCTTCTAGGCCGTCCTTTTTAGGCCTCATGGCTAGTAACAGAGGAAA-------CATCAGGCCGTTAAAATCCTTCCTCCACGAGCTCTACCTGAAGCACTATCCAGAGGTCGGCGATGTTGTACATCTTCTCAACACCAT------------CGGGGTCGACT---GCGACCTCCCACCAGGCCACCCACTGCTC-ACGGCCCACAGGGGGTTGTTTTTGGCCAGGGTCCTACAGGCTGTGCAGCAGCACAGACTGCTGGAAGACGCCATCATCCCCAAGATCCTAAAGAAGCTGGCATATTTTCTGGAGCTGCTGAGCTACTACTCCCCCAAGGATGAGCAGCGAGCCATAGCCGAAGTCCTGGACCACCTCAACATGAGCCGGGACATGGGACTGGATGACAAGCTGTGGGCCCTGATCAGAACCCTGCGCCAGGAGAGGCACCACGCTTC---TGTGAATGTGGTTCTGCCTGAGAGCGACTACACGGCCCTGTCCCTGCAGTACTACGAGGGC----ATCTCTCTGGGCATGAGGAAGGTCGTTGCAGATA--TCTGCCGAAGCGGCTATGCCTCCATGCCCTCCATGACGGCCATTCACAACCTCTCACACCAGTTGCTAATGGCCTCAGGTCCGAGCGAGGAACCCTGTGCCTGGCGCGGTTTCTTTAACCAGGTTGTTCTCTGGACAGTGGCACTCTCCAAGTTTCACAGATGCCTGTACTACAACTACATTCATGGCTCCATAGCCACCCTCTCCCAGCTGCTGCACCTTGAAATCAAGGCCCTCTGTGGCTGGATTATCTCCCAGGAGGGGATGCGCATCTTTCACCGCAACAGGCCGCTCCTCACCCTCTGGGAGAGTGTCGCCGCCGACCAGGAGGTCACAGACGCCATTCCCCTGCCTGACTGCTCTGAATACATCGACCTCCTGAAGCACACCAAACACGTCCTA------GAGAATTGCCCCCCCATGCCATATCCATAATAAAGTCTCTTACCTTCTGTTTGTCTAGTCTGGTGTTGTGTCCTCGATGGTATGCTATGACAAAATAGGCTGGCTGACATGGGCTATTGGGCTTTTATGAGCCA-TTGTCAGGGGCGGGACAATCGCAATATAAAACCCAGACCATCACATGGGAGCTTTAGGCGACTCTGCAT-------CAACATCGCTTCAGGATGA-GTGGGCAAC-----AGGAAGGCTCGGTTATTTTGGTTCCTGA-----ACATCTGGCCCGGGAGGTGTCTCAGCTA-TTGAGCGATTTTATCTCTGATCATGATGACGCTCTTACTGGCAGAAATATTGCAGGCAAAATCCGGCGTGTGCTG----GGTCGGGCCTCTGGGGACCATAATCTGCCTCTTCTCTCCTCCCTGTTTGCCTTATGGAATGCTCTCCCAGGC--------TCTATTAGGCAAGCTGCCAGGGAAAG-GCTGATATTACCAGGCGTGCAGGCCCTGACCACGGCCTATGGCTTGTGCCGGGGGGTCATTCCGGAAGAGACATCTCCCAGTGATACACCCGAAACTTTGCTTCAGGCTGTTGTGACAGGTCTGCA-AAAATTGTGGTTGGATTCCTGCGGCTGTCCAGAGTGCCAGCGGTGTGTTAGGGGCTTAGGGGCCCTGACTCCCGGGCTCTTTGAACTACCTAAGATCATCCCTCACAC
s NC_004367.genome 76234 2335 - 149696 AGAAGGCACAGTGGGAGGATGGTACTGGTATGGCCTCTGAGACAGGCGTGGCTTGCGTATGAAGCCCTAGGTAAACCTTTAATTAGGGACTTTACCTCCATAAAATTATCAGTCAGCTTTCCCGTCTTCGAGGATACCATGCACTGAAACATATCATCCAAGTTTGGATAGGTGAACACCCACTGACAGTAAGCTTTAAACTTAGACTTTACTGCACCATCCTTAAACAGGGCAAGGAGGTGATCTACTACATTCTTCCCGGTACGTAGTATGGCTGCCCTGTCCACACCCAAAACTTTGCTGTAGGTATAACTCTTAGCCCTAACGTGTCTTAAAAGTTTGTACACCGCCGTACCAGCAGTAGCTGGAATCAAAACACGGTTACTGGGTGCCTGAATGAAAAACCTATCAGTCATCACTATAAGATGATCTAAGGCATATCTCAGAATGATGGCACAAGCGACCGAACAAACATCTCCCCCAGAGTTTTCCGTCCGACGTCTCACGCGATTGTTTCTCACAATAGCCCACAAATTACAGACGTTCAGTGTAGCGACAAGTCCGCCTAGTTCCTGCCCCCTGCTTCTGGCCTCCCCTATAAAGGTCTGACAAGTCCTGTAGGTCCTCTGTACTATTGCAGCATCTGATGCGCATAATTCCCCGTCAAGAACCTTGCAGTAGTCAGTCAGTAGTGAAGATACATTCGTCCTAGTGGCGCCCGATATCTTCACAAAGTCTTCCAACCCATCTCTCTTCGGCTTCATTGTAACTATGGAAAAAAACCATGAGCGTGAGTCCCACAAG----TTCTTTCATAACCTGTTTTTAAAGCACTATCCAGATACCATGGATGTCATCCACCTAATTAACACTGTGCCAACAAAGCCCGGTGTTAAATGGAGCGATTCCCCTATGTG-----CATTATTCAACGTGCCACTA--------TTCTGGCCAAGACCCTACAGGTTGTACACCAACATAAACTTTCTGAGGAGACGGCAATACCAAAGATATTGGAAAAGCTAAAATGCTTCCTAAAGCTGCTGCATCATTATTCAGACCCGTATGAACAAAAGTTTATCAGGGAAACTCTGGATCACATTTCAGTTAGTCGTGATATGTTTCTTGAGTGTAACCTGTGGACCCTGGTGCGACACCTGTCC---AAGATTCATCACCCGTCTAGTGTAAATGTTGAAGTAACCCACCCAGACCGGGCAGCCTGGGCCCTGCAGTACTTTGATGGCCTGGATAGTTCTGTTC----GATGCGCTGTCGCCTCTACGTTTACCGAA--GGCTACAACTCTATGCCATCTCTAACCGCTGTTGTAAATCTAGCCCAGGTTATCTTGGAAGCGTCAGCCCCATCTCATGAACCCTGCACCTGGACCAGCTTTTTTAACCAGGTAGTAATCTGGACCCTGGCACTGGATAAATTTCACAACTGCTTTTACAATAGACATATAGAGGGCTCAATAGCCTCCCTGTCTCAGCTTTTGCACATTGAACTTAAGTCCCTCTGCCACTGGATGCTCTCTGTTAACGGATTGTCCATCTTTTGTCACCGGAGACCCCTTCTTACCTTATGGGAGAGCGTGGCAGCCACCAAAGATATAACTGACATAATCCCACTGCCCGATGCAACTGAAATCCTGCACCTATTGAGACATACTAGAAACCTTATAGCTTTTGGTAATTAGTTCAATAAACCTTA-CCTTGGCAATGTCCCGTTCCGTATCCTTG-------------TGTGTCTTCTAC----TGTTTTAAC----------GGGTGATAAGAGCTG-TGACTCCTTATGAGACATTTGGGATGGGTGTGTCACTTTTAAACTATATAACAACTCAACA------------ACATGCCTCTTCACCTATGGACATCATCGCTCAAAGATGACAAGCGCTACCACTAAACAAGTTTCTAGCCTTTTGACCCAGGATGGGGAGATTATACCCAAGTGGTTACTCAACTACCCAAACGA-----------GCCAAAATGG----GTCAAGGGCACTACTTTAGCAATGAGGATTATGGATTCCCTGACCCAGCAAGGCCTCAAAGAGGCAC-ATGGTCCTGTATTTTCTTACCTGTTTACTTTATGGAATCTATTACCACATGGTGCACGTCAGTTAAGCAA------AGAAAAAGAGTTAATACGCCCAGCCGTACAGGCACTCAGTACAGCCATAGAATTGTTTGAGGAGCTATTCCCTGAAGAGTCTACCATGACCGATCCTGGCATGGTCATGCGCAGGGTCGT----ACAAGCCTTAATTGAATTGTGGGATGATGTGTGCGGCTGTCCTGAGTGTATGCACGTGACTAGAGGTCTGACCCACCTAAAACCGGGTTTGTTTCAAATACCACGCACCATACCACACAC

a score=2171.0
s NC_006146.genome 89032 140 + 171096 GATAATCACTTTTATTTCCCCACGCCGGGGCCTTTG---AACCCTTTCCACTTTCCTGAAACTCTGCTGGGGCGCATTTTGGTGACCGAGCCCAACGTGTGTGCCGCGAAGCACGTTGTCGCGTTGGTTAAACAGGGAGGCGG
s NC_004367.genome 78906 143 - 149696 GACAATCCGATTCATCACTTAAGACCAGAGCTTTTGCCCGTCCCTTTACATCGTCATGAAAAATTGAGGCGCCGCATTGAGGTGGTTGATCCTAGTTTATCCCTGGCATCTCATATTGTGTCATTAATCCACCAAGGAACCAG

a score=3776.0
s NC_006146.genome 90303 143 + 171096 GGAAGAGGAGGAGGCGGTGGAGGAGGCAGCCGAGGGAGAGGCCGAGGTAGAGGAGGAGGCAGTAGAGGTAGAGGCCGTGGTCGAGGACGAGGAAGGGGCAGAGGGGAGGGGCCTAGTAAGGGTGAAAAAAGACCGAGGAGTCC
s NC_004367.genome 79713 143 - 149696 GGAGGCAGTAGGGGCGGCAGAGGAGGCAGGGGTGGAAGAGGCGGTAGCCGTGGGAGAGGCGCTAGCCGTGGCAGGGGCGGTAGGGGTGGCAGAGGCGGTAGGGGTGGCAGGGGCGGTAGGGGTGGTAGAGGCGGTAGGGGTTC

a score=3492.0
s NC_006146.genome 90936 242 + 171096 CGCCTTACGCCTCTAGGACGGCTGCCATTTGGCTATGCACCCGAGCCTGGCCCTCAACCTGGGCCCATGAGAGAGTCTACAGATTGCTACTTCATCGTATTTTTACAAACTATGATATTTGCCGAATGTGTTAAGGATGCCCTTCGAGACTACATTATGACCAAGCCACTTCCGACCTCTTC----TGTTCAGGTTACAGTTATAACATTTGAGGA---------CCCCGTGATGCTTCCTGTCTTTTTCCCTCC
s NC_004367.genome 80238 245 - 149696 CGCATCAGCCCTCTTTTTCGATTGCCCTATGGGAGTGCCTTTGGTCCCGGCCCACAACCTGGCCCCATATTGGAGTCCAGTACATGGGGCTTTTTAGTCTTTACTCAAACTAGTCTCTTTGCGGATGATATAGCAGATGCTATAAGGGACTAT----TGCACTACTCACCCCGGACCAACTCGCAACACTCAAGTAGTTTTAATGAACTTTGAAGGGAGTGGAGTCCCC------CTTCCCATGTTTTTCCCTCC

a score=41148.0
s NC_006146.genome 91378 1198 + 171096 CATCATGCGTGCTGTTAGTGGGTTTCTGTCCGTCTTTCTCGCTGTCATTTTTGTCCTCCCCACGTGGGGCAACTGGGCCTAC----CCATGTTGTCATGTCACTCAGCTCCGCGCTGAACACCTCCTTGCGCTGGAAAACATCAGCGACATTTACCTGGTGAGCAATAAGACCTGTGATGGCTTCAGCCTGGCCTCCTTAAATTCAGCAAAGAACGGGACAAGTCAGCTGGTCATTAGCCGCTGTGGAAACGGACTCAACGTGGTCTCCTTCTTCATCGCCGTCCTGCAGCGCAGCAGTTCCG------CCCTCACAGTTCAGCTCCGTGAATTGTTAAACACCCTCGAGAGTATCTACGCCT--CCTTCTCGGTCGAAGACCTGTTTGGGGCCAACTTAAACAGATACGCATGGCGTCACGCG---GGCTAGACCTGTGGCTGGAGGAACATGTGTGGAAGAGGAAACAGGAGA----ATGGTGTCAAAGGTGAAAATCTGCTCCTCCCCGACCCATGGCTTGATTTCCTGCAGCTCAGCCCCATCTTCCAGCGCAAGTTGGCAGCCGTCATCGCATGCGTCCGGCGCCTGCGGACTCGGACCATCATCTACCCAGAAGAGGACATGTGCATGGCCTGGGCTCGCTTTTGCGACCCCTCCGATATTAAGGTGGTTATTTTAGGCCAGGACCCCTACCACGGAGGACAAGCAAACGGCCTGGCATTCAGCGTAGCATATGGCTTCCCGGTCCCCCCCAGCCTGAGGAACATTTATGCGGAGCTGCACCGGAGTCTGCCGGAGTTCTCTCCCCCGGATCACGGCTGCCTGGACGCGTGGGCCTCCCAGGGAGTATTGCTGCTCAACACCATCCTCACTGTGCAAAAGGGCAAGCCTGGCTCACACGCTGACATTGGCTGGGCGTGGTTTACTGACCACGTAATCTCATTGCTCTCTGAGCGGTTAAAAGCGTGCGTGTTTATGCTGTGGGGTGCGAAGGCAGGAGATAAAGCCTCACTGATCAACTCCAAGAAGCATCTGGTTCTGACCTCGCAGCACCCCTCTCCCCTGGCTCAGAACAGCACCCGCAAGAGCGCACAGCAGAAGTTTGTGGGCAACAACCACTTTGTCCTCGCCAACAACTTCTTGCGCGAGAAGGGTCTCGGTGAGATAGATTGGAGACTGTAGCGGCGCCGGGATGGCCATGTTTCTAAAGTCT
s NC_004367.genome 80819 1194 - 149696 CATCATGCACTCTGTTGTCTG--TTGTGCACGTGTTGCC-----TCGTTTTCGTGTCCCACG-GCGCGTCAAATGTCCCGGCTATGCCGTGCTGTCACGTCGATCACTTACGTGAGGAGCATAGTCTACCTTTGAGGAACATAAGTGACATATACCTGGTGAGCAATAAAACATGTGATGGATTCAGTCTAGCCACTTTAAATTCTGTCAAGCAGGGCAAGAACCAGGTGGTAATTACCAGATGCGCTAATGGGTTTAACGTGGTCGCTTTTCTACGCGCACTGTTACAGCG------TCCCGAGGAATCTCTCCCAAGTAAGCTTAAGGAACTACTGGCGGCTCT-GGCTGCA-CTACATCTGTCTTTCTCTGTAGAAGATCTCCTCTCCGTGGATTTGTATAAATACAGATGGAGTATCAGGAGGGGCTCGATGCGTGGTTAGAAGCAAATGTCTGGA----GCCGCAGGAGGCCACATGCAATACATGGAGAACACCTGTTGCTTCCAGATCCATGGCTAGATTTTTTGTCCCTGACTCCAATCTTACGGAGAAAACTTCAAGCTGTCATTAACTCTGTGCGCAGGCTTCGCCAGCAAGTAACTATTTACCCAGATGAGGACATGTGCATGTCATGGGCACGCTTCTGTGACCCGTATGAAGTGAGGGTCATTATTCTAGGACAGGATCCTTATCACGGTGGACAGGCAAACGGCCTAGCCTTTAGCGTAGCCTACGGATTTCCCATACCACCTAGCCTGCGAAACGTATATGCGGAACTTGAAAGAAGCATTCCAGAGTTTAAAGCTCCGGACCACGGGTGTCTTGAAGCCTGGGCCTCCCAAGGTGTTTTGTTGTTGAATACAGTTCTGACTGTAGAGAAGAGTAAGCCTGGCTCACACTCTGACATAGGCTGGACGTGGTTCACAGACCACGTCATTACGCTTCTCTCAAACAATTTAAAAGCCTGCGTCTTTATGCTCTGGGGTTCAAGGGCAGGTGATAAGGCTTCAATTATAGATACTAGAAAGCATCTGGTCCTGTCCTCGCAGCATCCATCTCCACTGGCACAAAACAGTACCAGGCGGGGGACACAGCAAAAGTTTATCGGAAACAATCATTTTGTAGAGGCAAACACATTCCTACGACAGAAGGGTCTTGGAGAGATTGACTGGCGCTTGTAGCCTGCCC---ATGGCGATGTTTCTACGGTCT

a score=169655.0
s NC_006146.genome 93177 5063 + 171096 [encoded data, 5198 characters]
s NC_004367.genome 82466 5062 - 149696 [encoded data, 5198 characters]

a score=30256.0
s NC_006146.genome 100448 1214 + 171096 ATGCCCACAACCCATATACCCCACCACCGCCCTCCGACCTGGGTA--ACATTATAAAAGGTAACCGAGCTGACCCGCGCCCTGACAC---------------------TCTCCACGGGTGTTTCCATCTTTCACAGCCGAGGACGAGGACCGGCCTTTTTAAACATC-------CGGTCACACCCTTTGCAAATTATTTAAAAG------GCGAATGCTCATCCCGGACCA-------------TCGCAATCATGAAGTCCTCCAAGAATGACACGTTCGTCTACAAGATATGGGTGAAAACGCTCGTGGTGTACTTTGTGATGTTTGTCATGTCGGCCGTGGTCCCCATCACCGCCATGTTCCCCGACCTGGGGTACCCCTGCTACTTCAACGCGCTGGTGGACTATGGGGCCCTGAACCTGACCCAGTACAACACGGCCCACCACCTCACCCCCATGCTCTATCTGGAGCCTCCAGAGATGTTTGTCTACATCACGCTGGTCTTCATCGTGGACTGCGTGGCTTTCATCTACTACGCCTGTGGGGAGGTGGCACTGATCAAGGCCCGCCGGAAGGTCTCGGGTCTCACGGACCTGTCGGCCTGGGTCTCGGCCGTGGGGTCCCCGACCGTGCTGTTCTTGGCCATCCTCAAGCTCTGGTCCATCCAGGTCTTCATCCAGGTCCTGTCCTACAAGCACGTCTTCCTCTCGGCCTTCGTCTACTTTCTGCACTTTCTGGCCTCGGTCCTGCATGCCTGCGCCTGCGTGACCCGCTTCTCGCCGGTCTGGGTGGTCAAGGCTCAGGACAACTCCATCCCCCAGGACACCTTCCTGTGGCAGGTGGTCTTTTACCTGAAGCCGGTGGTCTCCAACCTTTACCTGGGCTGCCTGGCCCTTGAAACGCTGGTCTTCTCCCTCAGCGTGTTCCTGGCCCTGGGCAACAGCTTCTACTTTATGGTGGGGGACATGGTGCTGGGGGCAGTCAACCTGTTCCTCATCCTGCCCATCTTCTGGTACGTGTTGACGGAGGTGTGGCTG----GCCTCCTTCCTGAGGCACAACTTTGGCTTCTACTGCGGCATGTTCATCGCCTCCATCATCCTCATTCTGCCCCTGGTTAGGTACGAGGCGGTCTTCGTCTCGGCCAAGCTGCACACCACGGTCGCCATCAACGTGGCCATCATCCCCATCCTGTGCTCGGTGGCCCTGCTCGTCAGGATATGTCGGATC--TTCAAAACCATGCGCCAGGGCACTGACTACGTCCCC
s NC_004367.genome  89898 1244 - 149696 ATGCGTACGATCCATATCGCCCACCATCTTTTGC--ACCTGGCCACCACATTGTAAAAGTGTACAGACACAATATTGGCTACAACATGCGTTACGTCCGAGGCCATTTCCTCCACTAATGGTTTCACCCTCCTC------------GCACC--CCTTCCAACTCACCATTGGAATGTTCCCAACCCTTGTCCATTATTTAAAAGTTACGGGCCAGTCATCTGTCAGAATCAGTTACACATCACATCGGCACCATGAAGTCTTCAAAGAACGATACCTTCATTTATGGAATATGGATCAAGTTACTAATTGTATATTTTGTGATGTTTTTCATCGCCGCAGCAGTCCCCATCCTAGCGTCATTCCCAAATTTGGGATTTCCATGTTACTTTAACGCAGTGGTGAACTACAGTGCCCTCAACCTATCCGAATATAATGTCATGAATCACATCACACCGACCCTGTACCTAGAACCACCGGAAATGTTCACCTACATGTTTATTTCATTTATGTCCGACTGTGTGTCTGCCATCTACTACGTATGCGCCGCGGTGGCGATGTATCTTGCCAAGAAACAGGTATCCGGCCTAACGGATCTCTCATCGTGGATTAATTCGGTAGGTTCCCCAACTGCCCTGTTTCTTTGCATCCTGAAAATGTGGTCTATCCAGACCTTCATCCAAATCCTGGCATATAAGCACCTATTTCTTTCTGCATTTATCTATTTCTTACATTTTGTGAGCTCAGTGATTTATGCGACTGTATGCATCACCAGGATGTCACCAATCTGGATCATCAAGACACAGGATTCATCAATTCCAAGGAACACTTTGTTATGGCGCGTTGTATTCCAATTTAAGCCTATAGCGACAAACTTTTGCATGTTATGTTTAGCTTTGGAAACTCTGGTATTTTCACTAAGCATCTGTCTCGCCATTGGAAACAGTTTTTACGTGATGGTAGCCGATGTGGTGCTTGCCGCCATTAACTTATTTGTGCTGCTTCCATTAATTTGGTATATCATCACAGAGGTCTGGCTGCATAAGTTTTTCCCTCATCCATA----TGGATTCTATATAGGTACACTCATAGGATCCATAATATTAGCACTGCCTCTCATACGTTACGAGTCGATTTTTGTTTCAGCTAAGCTACACAGCACCATTGCCGCCAACATCTCTATAATCCCAATACTCGGATCCATAGCCCTTATGATCAGGGT-TGTCAGGTCATTTCTAAAAAA----CAAAGACACTGAATACAGCCCC

a score=57723.0
s NC_006146.genome 102315 1576 + 171096 TTGATCGTTTATTTGG-CAGAAATGGCAGTTCATCATTCTCAGACTCATCATCGTCTAGCCCCTCGTTGGTCTCCCCGCCAGCCCTCCCTTCCTCAACTGCCATCAGCTGAGCAGTCTCCATACTGAAGGCCTCGTAGTCTTCATAGAGGTTAATCATGCCCCCATCCACGTTGGCTATGGAGTTGACTCGTCGCCGGCAAAGAGACCAGAGGGCACCCATGGCGCGGTGTCAAAAGTGTTGTCTGCGTAGGCTTTCCAGGAGCCGGCCGCGGCGTTCAGGGTCTCGCGGATGACAGAGTCAGGCAGCACCACGGGAGTCACCAGCACCGCCACGGGGATCTCCACAGAGGCGTCCAGCAGCAGGTCCGAGCCGAGCGTGCAGGTCGGGGGGTCTAGGGGTGAGCGCTTTCGGAAGAAGGCAGTTACAATGTTCACCCGGGGCT----GGCAGTCTCTGTCAGCCGCGCCTCCCCCGCTGTGCCGGACGTAGTCTCCGACAATCTTGTACTGGAGGAGCACCTGATAGAAGTAGTTGTGCCGCGGATTGATGAAGATATTGACGGGGACCCGGTCTTTAATACCAATGCGCCCAGCATTTTCGCTTGGGTCCGTCATGACGTAGAGCATAGACTCCACCCCCCTGTTGGCAGCCAGGGCAGCCGCCACCTGGTCGTGGCCGGGCCCCAGTTTGCGCTTACGGACCTCCTTGAGGTTCCAGGCTTCATCCTGCGTCAGCAGGTAGTCGCCCTCCGAGGGCAGCCGCCCATCCGGGACATACTCCACGGTGGGCCGGGCTATGGAATTGATGAAGCGGATAAATGACCTCTTGCAGGGCCTCTCATACAGCGCCGTGTAGGAGGGGTAGATGGGGTCAAACTCAGACTTGGAGAACAAGTACTTGAAGCGGCACTTTATCTCGTAGATGCAGCTCCGGTCTGTGAACACGATAAAGTCCCCCCGTGACTCCACGTTGACGCACAGGTCCAGAGACACACCAAAAATGCCGTCCGTCGGGCTTATCATGAATCCAAACTGGCGGTTGGCGGCCGCGTCCCCGCAGATGAGCTTACAGACAATGTCCTTGACCGTGTCCTCGCACCGGAGGCCAAACGCCACGGGCCCCCCAAAGTAATGATTGGTGGAGATGGGAGCGGGCTCAAACACCTTGGTGGGACCATTCTTAATGGTGGAGAGCAGCTTTGATGAGGAAATTATGCCATTTCGCAATATGTCCCACATCAGGTTCTCAGACTGCCCCCGTGTCATGGACTCCACATAAGAGCAGAGCACCGTCTTTTGCTCGTCAGTGGCCTCCTGTAGGCCCCGATAGATGGATATTAGGGAGGGACTTTCCTGGCTGTCATTCTCTTGGATTAACGAGGAGACAAAGTCACAGAAGCCAGTTTCACCAGAAAACTCCTGTATTTGCTTACAGAGACAATAGAGATAGACGTAGCGCATGGCGGGCATCTGGGGCGGGCGGTCGAGGTCTCGGACAAAGTCCTCGATCTCCGGACTGCGGAGGAAGCGGGCGAAGGTGTAGGAGGTCATTTCCTCCATGGGGTCCTCGAGTTCATCA
s NC_004367.genome  94369 1565 - 149696 TTTATTTTTTGTTTGGTCAGGGCCGTAAATTCATCATCGTTG---TCATTATCGGAGAGTTCATTTGTGATTTC------GATCTCATTTTCATCATCGGCGATAAGACAAGGTGTTTCCACGGAAAAGCACTCAAAGTCATCATATAGATTAATTTCTTCCCCATTTACAGACTTCAGGGGGTATACTCTGCGCCGGCAAAGAGAGAAGATGGAACCCATGGTGCACTTTCAAAGGTATTTTCGGCGTATGCCCTCCCAGATTCTGCAGAAGTAGCCAGTGTCTCCTTCACGACGGAGGGAGGGATGTATATTGGTGTTACAAGAACAGCCACGGGTATTTCAACAGATGTATCGAGTGGTACTTGCGGACCGATTGTACAGAGTGCCGGGTCCGACGAAGATCGTTTGCGGAAAAAAGCTGTCACAATATTCACTTTGGGCTTAGGGTTTGTTTTCTTTGATTGAGACCCCC-------AGCGTATGTAGTCTCCTACAATTTTGTACTGAAGCAGCACTTGATAGAAGTAGTTGTGTCGCGGATTAATGAACACATCTACAGGGACGCGGTCTTTAATACCAATTATCCCTGAATTCTCACTTGGGTCATTCATGACGTAGAGCATAGACTCGGCCCCTCTATTATAATCTAAACACGTGACTACTGTATCATGACCTTCACCTAGTTTGCGGCGTCTCACTTCCTTCAAATTCCAGGACTCATCCCTAGTTAATAGGTAGTCGCTTTCTGATGGAAGCCTCCCATCGGCTACATATTCAATGGTTGGACGGGCAATAGAATTAATGAATCTAATAAACGATTTCTTGCTTGGGTTCTGATACAAAGCAGTGTAAGATGGGTAGATGGGATCAAATTCAGATTTGGAAAACAAGTACTTGAATCTACACTTTATTTCATAAATGCAGCTGTCATCTGTAAACACTGTAAGGTCTCCTTCTGTTTTAACATTCACACACAAATCTAGAGAGACCCCAAAAATGCCATCCACGGGGCTTATCATAAACCCAAATTGCCGCTGCTCAGAATCTACTTTTTGTATCAGGTTGCAAATAATGTCTTTTACCGTATCCTCACACCGTAAACCAAATGCAATGGGGCCGCCTACATAGTGGTTGTTGGAAATTGGGTTTGGCTCAAACAGTTTCATTGGTCCATTTTTAAGAGTGGACAGCAGTTTTGAAGATGAAATAATCCCATTCCTGAGAATATCCCACATCAGGTTTTCAGACTGGCCACGTGTCATAGACTCAATATAGGAACATAGTTGGGTTTTTTCTCTTTCTGTGGTTCGGGCCAGCGCTCTGTAAACCGCCCTTAGGGACGGTGGGGTCTCACGTATATTCTCCGGGATTAACGCCGTCACAAAGTCACAGAAGGCAGTGTCACCTGAAAACTCTTGTATTTCTTTACAGAGACAATAAAGATACAGATAGCGCATTGTGGGCATCCGCGGCTGTTCCCGAATCTCCGAGGCAAATCTTACAGCATCTGAACTGCGCAGAAATCTGGCAAAGGTAAATGTCGTCATATTGATCATCGGATCCTCCATTTCGACA

a score=85373.0
s NC_006146.genome 103909 3517 + 171096 AAAGTACTCGTCTGCCAAGAGCTCCGCCACCAAACCTGGGAGAAGAGGGTGCTCAAAACGCGGGCGACAGTTGAAGAAGTGGCTCTCCTTGAACCTCTTTTTAAGGCCACGGCACCACTGCAAGAATTGACTCATGTGCTCCTCCGTGACAT--CCACGCACGGACTCTCGCCGCAGGAAGTCAGGCCCACATCCAGGTTCAGGTTCCACATCTGCGACAGCACCTCCAGCAGCACCACCTTCGGGGCCGCAAATTGCAAAAAGTAGAGCGGGTCCGATCGGTCAAAGCCCATGTCGGGGTTGGGATAGGGAATCTTGTGGGTGGTGTCGGCCAGCTTCATGACGCCGTAGAGCAGCGAGTAGCCGAGCGACTGCAGATCCAGTCGCAGGGCCGTCTGCGCCCCCACGGGGCCGCAAGCCGAGGGTTCAGGGAGGTGCCCCGCCCCCCTCAGGATATAGCACTTGCTCAAGAGGCAGAGGGACTTGTAGGTGTCCTTGGCTATAGAAAAGGGCTCCCTCTGGTAGTAAAGGCGATACAGCTGCCGGCCCTTGGCGGACTTTAGCCTCACGTCCAGGATCTTGTTGCGGTCGTGGAGGGAGGCCGTGCCAAAATCCGTCAGCACCAGCCTCCCCATGCCCCACATGGTGGGGGTGAAATCCACCAGGATGTTGCTGGGGCTGATGTCTGAGTGGAAAAGGCCGCAGTGCTGGTTGAGAAAGTAAACGGCGTCCTTGAGGCCTTGAAAGCCCTGCACCAGGGGCTCGATGCTGCTGTCATTCCAGTGGCTATAATCCTGGAGACTGCATCTGAACTGGGGCATAAAGAGGGCGTGACAGGATGTGCAGGCCGACAGGTAGTCCACCAGAGCCTTGTCCTGCCCATCCTCGGACGTGGCCTTTCCAATCTGAATCATGTCACAGACCATCAGCTCGTGGTATAGCTCTGTCACGGCGTCATAGAGCTTGACGGTGGCGTTCTCCCCGTACACATACACGGCCCCGTAGCTCCCCCGGCCCAACAGATACTCGCAGGTGATGGGGAGGTGGTCACAGCGCGTCAGCTCCTCCGGCAGCTTCACGTATAGCGTCTCCGTCATGTCATCAATGTTGGTCACCTTCAGGTGCTTGTGCTGAAAGGTGAAGTAATCAATGACAGTCACCTTCCCCAAAAAGGCCTGGGGCTCCCGAGGGGGCTCTGGGGAGACACTCAACTCTCCACTGCTCAAGGAGTTCGTCGGACTCCTC------TCCGCGTCCATAGTCACATCGTCCATGGTCC---TCAAAGGGCTCGAGCGCC-------TGGCGCAGCTCGTCTCTGGCCTCGAGTTCCTGCTCACGAAGCTCCTCTACCCGTTCCAGCTGCTTGTAGTTTATCTTGGGGAA----------------ATGGGTCTTGGTTGAGGTGACTACCCTCCTGTAGGTGGAAATCAGCTGCTTGGACTCAAACGTCTCCTGCGCACGTCGCAGGGTCTCTAGGGCCACACGAGCAGATGAAAACTGCGTTTCAAAGAGAGCGTGTTCACTCCCAAATCTGTCACGTGCGCTCACCGCCGCTCTCTTTTCTACCGAGGCTCTGAGTTGCTGGGCCACCAGGTCTCGCTTAGCACTACTCATCTTCATAAGTCACCATGTCCGCCACTATGGAACCCAGATCATAGGTGGGATAGAGGACAGTGGTTCCGGTAGCAGCTTCCCGGTAATTGCCCACGGCGTCCACCAGATATCTCTCAGCCTCTCCCGTTAGAATTAGGCAGGGATCATACGTGTCCACCGGTCTTTTATACTGAGCGTTTAGGTTTTGCTTATGCAGCAGACACAGGAGGCACACTCGAGTGATGCAAACGGGTTCCTGTGGTAGCAGGCTGAGCTGTTTTGCCATTTTATTCAGGCGGCTCACGTCAAAGGGAGGAGCTATTTCCTCCCCCTGCCAG---TCACAC-------ACATCCGCATAGAGGGCATACACACACCTGGTGAGGTGTGCCAGGAAGGCCTCTATGTTGGCTCGCGGCGTGTAGATCGCAGTAGGCAGCAGAATAGGGCCCCTCCTGCCCCGCGCCGCCGAGTAGACGCAGTGCCGCTCCTCGCAGTGGGCCCTGGGACCGTAGAAGAGTGCCCATAACCAGGGAAGCGGGTCTTCAGGCACCAGAGAGGTCCAGGTTTGGGAGTGGGCCAATATTTGCAAGGCCTGACCTATAACC---TCATCTTTGTTCCAGGTCAGCGCAATTCGCATCAGGTCCCCGTCGTAGGCCTCAAAACACAGACCCGAGCCCTTCTGCACCTGAGGCGGCTCTGCGGGTGTTAACCCCCCC-----------TGTTCA----------CCGAACCGCCATTCTTCCGGTAAACGAGGGTTGAGGG---GTGAGAGCTCCAAGGCCAGGCTCGAGAAGTCATA-------------GTCATCCCCGGCCTGCTG---------------------------ACACGGGTCCCGGG--------CCTCC------------------------TGCCAGGGCCTGGTGTCCTGGGGGAGTATATTGGTCACCAACAGAAAGCTCTTGAGCGGCGTCTCCACCAGTTTGAATTGCTCGGGTGTGTCCTGACAGGCCTCAAGGGCCAGTTCCAGACACTGCCCATACCTGCGGGCGAGCATTGGGTCATCTGGCATATCGGCCTTGACCGCGTTAAACATGCTGTACGCCTCGCAGCGTGGCCGGTTGGCCGAGAACCTCAGAAATGCCCTTCAGCAGGACAGCGCCACCCAAGGCTGTCTCGGCGCCGAGACCCC------AAGTATCATGTGCACGGGGGCCAAGTCAGACAGGTGGGCGCATCCCCTGGTGGGCACCATCCACTCCAGTAATTTATATTGCCCAATGCTGAGAGCTTACTGCCGCCA----GTACGGCCCCAGGCCCGTG-TTTGTAGGCTCTGATG--CAACATTACCCATG---TTCGGAGCGAGCCACGCCCCTCCCGCCCCGGCCCA----GGCGCAGATGTGCCTCCTGCCGG-AGCTCC---GCGACACCTTGCAACTCCTGCTGCCCCCACCCAGCCTGGCAGACTCCGAGGCCCTGACTGAATTCAAGACCAGCGTGTCCTCCACCCGTGCCATCCTCGAGGACCCCAGGTTTGTGGAGATGAGGGAGTTTGTCACCAGCCTGGCTGGCTTTCTGGGGGGACAGTACAAGCACAAGCCGGCCCGCCTAGAAGCATTCCAGAAACAAGTAGTGTTGCATTCATTTTATTTTCTGATCTCAATTAAATCATTAGAGATTACAGACACCATGTTTGACATCTTCCAAAGTGCTTTTGGGTTGGAGGAGATGACGCTGGAGAAGCTGCACATTTTCAAGCAGAAAGCCAGCGTGTTTCTCATTCCCCGGCGCCACGGCAAGACCTGGATAGTCGTGGCCATCATCAGCCTCATCATCTCAAACCTC----TCCAACGTGCAGATAGGCTACGTCGCCCACCAGAAACACGTCGCCTCCGCCGTCTTCACTGAAATCATCGACACCCTGGCAAAGAACTTTGATGCCAAGCGCGTGGAAGTCAACAAGGAGACCAGCACCATCACCTTCAGGCACAGCGGGAAAATCTCCAGCACCGTCATGTGTGCCACCTGCT
s NC_004367.genome  96145 3604 - 149696 AAAGTAGTCTGTAGCAAGTAATTCTCCAACTAGTTCAGGAAGCTCAGGGTGTTCAAGGCGCATACGACAGTTAAAGAACTGGCTTTCCGCAAAGCGCTTCTTAAAAGATTTACACCACCGAACAAACTGACTCAGATGGTCCT--GTGACAGGGCCACGCACTTAACCTCGCCACAGGACGTGATGCCTAGGTTAACATCCATGTTCCACAGTTGACTCAATACCTCCAGTAAAACAATCTTAATGGCTGCAAATTGCAAATAGTATGCTGCATCTGATCTGGGGAGGCCGACGTTTGGGTAGGGATAGGGGATTTTGTTCGTGGTGTCAGCGAGTTTAACAAGACAATATAGTAGAGAGTAGCCCAGGCATTGCAGGTCCATATTTAGAGCAGTCTTGTCATTCATTGGCCCACAGGTAACCGGATCCAGTTCTTTTCCCATCATCCGTAGAACATAGCACCGGCTTAGTAACATAAAGGGCTTATAAGTGTCTTTTGCCACTGTAAATGGCTCACGCTGGTAATACATCTTGTAGAGTTGACGGCCCTTACTGGATTTTAAACGTACGTCCAGCATCTTGTTTCCACTGTGCAGGGTCGCATTGCCGAAATCTGTCAGGACAAGCTTTCCCATGTGCCAGAGGTGAGGTGTGAAATCCACCAAGATATTGCTTGGGCTTACATCTGAGTGAAAAAGTCCACAATTTTTATTTAGGAAGTGTAGTGCGTCCTTTAGCCCCTTAAAGCCTTGAACCAATGGATCAATGACTAGATCTGTCCAATAGTCAAAATCTTGTAGACTGCAGCGGTACGGAGTCAGAAAGAGTGCATGACAATGTGTGCATGCAGAGAGGTAGTCGATTAATGCGGCCGTCTTTCCATTTTCAGATTTTTCCTTTCCAATTTGAATCATGTCACACACCATCAATTCATGGTACAACTCTGATATGCTGTCATACACCTTTACAGTCGCATCTGTGCCGTGTGTATACACGGCGCCGTAACTTCCCGCTCCTAGTAGATGGTTAAAGGAGATGGGTTCGTGATCACAGGTGGTCATTTGATCTGGAAGTTTTACAAACAGAGTTTCGGTCCTCTTATCTATGTTTGTTACTTTTAGATGCCTATGCTGGAAGGTAAAGTAATCAATAACGGTAAGATTTTCCAAAACGTCTAGAGTGTTATTTTGGGACCGATGGGAGTTGTTCCAGGCGCCAGCGCTCAACGATATCTGCTGGCTGTTCATCAAATTCGTATCCATTGCCGTGTTCTCCTCCATCCCGTTTGAAAGGTGCAAGGGCTTCCTTAATCTCAGAGCACGTCT----CCTCCAA---CCGGTCCTGGAAATCTTCAGCGAGTTCGAGTTCCCTATGGTTTATTATGGGCAATGTTCCACGGAGTCTTCTGGATCTTGA--GAGG-----ATACACTTATAATCAGATACAAGGCTTTTCAATTCAAGGTCGGACCGTGTGCGGTTCAATTCCCTAACTGATTCCTGAGCTGCAAGCAGTTGGTTGTGAAACAAAACGTGATCTTCTCCAAATCTGTCGCACGTGGAGACGGCGACTTTTTTTTCAATGCTTGCTCGTAGCTGCTGCGCTATCAGATCTCTCTTAGTTTTAGCAGTGTCCATGTGCCAATAAGTCTGTGGCCATAGACTTAAGATCGTAAGTAGGAAATAAGACCGTAGATCCCGTCTTATACTCTCTATAATTTCCTACATCACCAACTAGGTATTTTGCCGCCTCTCCAACAAGCATAATACAAGGACTGGGGGCAGTCAGACTTGCTTTATACTGCGCAGTTAGATTCTGCTTATAAATTAAGCACAGTAGACAAACTCTTGATAAATGAAGTGAGTCACACCTTAAAAGCCCCATTTGGTGAATCACTCTGTGTAGGCGTGCTGGGTCAAAAGG-TATGCTGACACTTTCCGGGATCAGACCTCCCACTTCTGTGATGTCAGAATAGAGGCCTGTCACAGAGCGAGTAACAAATCCCATGAATGACTCTATGTCCGCCTCTGGGCGAAGGGCCATTTCAGGGAGTGCCATAGGTCCGGGCCTGCCCACGGTTTCCTTATACATACAATGGGGACTATCGCATAAGGACCGGGACCCATAAAACAATAGCCAGATCCACGGCAGTGGGTCTTCCGGAATGAGGGATGTCCATGTCCTGGGATGGGCCAGTAATTGCATTGCT---CCTGTAATTATGTCATCCTTGTTCCAGGACAAGGCTGCCCGTAAGATGGGGCCATCATAGACCGCAAATGGTAGACC-------------------AGTGGATC-GCGTGTGTTGCTCACACTCTAAGGAGGTGTGTTCATATGTGTGTTCTGAA----GATTCTTCAAGGGTATATGGTTTGTGTGTACGCGCGCATCGTAAACTGAGGCTTGAAAAGTCATATTGTTTACAATAGGTTGCACCCTTCTCGCCGCTAATTCTCCTTTCATCTGCGTTATCTGCAAGGATATCGGGTGAGTTATCCTCACAGTCCAAAGTGTCCATCCAACCGTGCCAGTCTCGTTTGTCTTGGGGCATAATATTGGACACCAGTAGGAAGCTTTTTAGGGGAGTTTTGACCAATTTAAACTGCCCTGGCGTGTCCTGGCAAGCATCTATTGCTAGTTTAACACATTGTTTATATTTTTTGGCCAGCTCTGGATCAGACGGCGTATCAGCCTCCACTGCGTTAAACATGTTCTATTCACAGCAACGGCTCCGCTTACAGGAACACCTACGCCGAGTGTTAAAGAATGATGGTGAAGGTCGAGGATGCCTCGGATCCGAACATCCATCAATAATTATAGACTGCAAA------AAGTCGGACAGGTGGGCTCATCCCCTAATAGGAGTGATTCATTCTACCAATTTGTATTGCCAAACGTT----------TGCCCTCATTTTGTCGGACTTTTGGGCCGCGAATCGTAAGCCTTCCTGAACAAGAGTGCGCCCGGGCTACATAAGGGGCCGAGGCCCACCCCGTCAAATGCACATGGTCGCAGA-------CCTGTCGGTAACACTCGAGCGGTTGCTCGAAAATCCAG---------GCCAGCCTGACCAA----GAGACACTGACTGAGTTTGAAACCGGAGTACGATCAACCAAGTCTATCCCGGAAGATCCTACTTTTAAGGAAATGCGCCAGTTTGTTAGTGAATTGTGTTTGTTTCTAGATGGGCAGTATAGGTGCAAAAAGGCAAGATTAGAGCCATTCCAGAAACAAGTAGTGTTGCACTCCTTTTATTTCCTAGTCTCAATTAAGTCAGTGGAATTGGCTGATACCATGTTTAACCTGTTTCAGGATTTATTTGGACTGGGTGGAATGAGCCTGGCCAACCTAAAGACATTTAAACAAAAGGCCAGTGTGTTTTTAATCCCAAGAAGACACGGCAAGACATGGATCATTGTTGCAATAATAAGTTTAAT----TCTAGCCTCTATGTCTAATGTACAGATAGGTTACGTGGCTCACCAAAAGCATGTGGCTATGGCAGTCTTCGCAGAAATAATCGAAACCCTAAATAGGGGCTTTGATACTAGGTGTGTGGAAATCAACAAGGAAACCAGCACGATCACATTTCACCATCCAGGAAAGCAGTCCAGCAGCGTCATGTGCGCTACGTGCT

a score=36446.0
s NC_006146.genome 107426 1415 + 171096 TCAATAAGAATGTAAGACCTGACGTTTCAGTACTTGGCAGTTGTAGAGCATTACCCGGCTGTAAAAGTCAGAAAAGCGTAGCAGGGTCCAGGGCTGCGGCGTGCACGGGACCTCTTTCCCATTAGCCAGAACTCCCTGCAGAACACGAGACATATCCGGGTGCATTTTTGGTGGGCTGAATCTCAGTCCCACTACAAAGGGGGCGTCCTCTGGTTTAAACATGAGCCCCAGGAGGGCCCTGTGCCCAGTTACCGGCACATAATCATTGTTTAGGGCAGAGCAGGGCAGCAGACAGGGACAGATACCGGAGGTGCCAGGGCTGTCATCTGCCGTCCAGCCACTCAGGACGTTCACATGCCCCCCGGATCCATAACAAGTCACACAGTCCCCATTCTCACATCGCGTGAGCAGGTTGATAAAATGGGTCAGAGATGGGAATGTTGGCATATTGGGGCAGCACATTAACATGTCCATGTTGATGAAAAACATGTACAGGGCCCCTTCTGCGTACCAAGCCCCGCCTCGCCCAAGTGGAGTAATCTCCGAGGGTGTGAGATCTTGCAGTTCTTCTACTGTTTTAACGGCGGTTGAAGTGGCGAAAACATGGGAGGTCGTCAGCTCCTGGGAGCTCAGTATTGGGTTGCCCCTAACCTCCACAGGCACAGCCTCACCCTCCGCATCTGAAAACACCCCAAAGTACATAAGAGTCAGGTTGTGTGGCCCCTGGACGGACTTGGTGAAGAGAACCTCCGGCCTGGCCACGGCGGCCAGGGTTCCATTGATGTACACCGTCACATATGTGGGCTTCTTCTTCGGCTTGAGCACGATGAGGGTGACGTTCATGTGGGTCCGCGGGGCTCCGGCTATCCTG-----GGCATGTACACGGCCGACACGGCTGTAGTGGCCGTGTAAACCTTCATCTGGTTCGTGGAGGCGTCGCTCGGCACCCATAGGCATTCCTTGTTAAGGAACTTGCGCAGCAGCTCCCGCTCATTGCCTGCGGCGGACGCCAT---TTCGGGCCAGAACGTATCCCCTCTCCTCGGGGGCGAGTTCCAATTGG------CCTTTAATAACAAAGCCCCCGGGCAGCACCAAAAACACCTGTCCGTCTGACGTGGCG--GCCAGGTGGACGCAGTGCCCGTCCGTACCAAGGTCCACTAGCCCGGAGGCCGCTTCAGCCAGCCCACCCGGGGTTCCGGAGTCGATAACCTTACCCCAGGCCGAGGCCCCGTCCTCGTACAGCGGGTGGCTATCTACCCAGAGGC-----GAGCT------------GACGGCACCCCCGGGGAGCCGGAGATAGCTTTCACCCAACAACTTTCCCAGCTGACCCGTGTCTCAATAGTGAAGAACGCTTCCCTGAGCAGGGTTGATTTTTTATAGATACTGGGGTAGGAGGTGGGAATAACAACTGGGATTTCTTGT
s NC_004367.genome 100001 1427 - 149696 TTAGTAACTATGTAGGCACTGCTTTTTTAGGACCTGGCAGTTATACAGCATAACCCGGCTGTAAAATGTTGAAAAGCGTAATAGTGTCCATGTTTTAGGTGTACAATCCACCTCTTCACCGGTGGCTAATACGCCGCTCAACACGTTGGAAATGTCTGGATGTAGCGACCCGTGCTTAAAACGTAGACCCACAATATTTTTTACATATTCAGGTTTAAAAATTAGTCCCAGGAGATTCTTGTTTCCTGTTACAGGCACATACTCGCTATGCATCGCCGAGCAGGGTAGTAGACAGGGACAGGTTCCGGATGTTCCCGGACTTTCCTCTCCTGTCCACCCGCTAAACACATTAACATGAACTCTTGCCCCATAACAAGAAATGCATCCAGTGTCATCACATCTAGTTAGTAAGTTAACAAAGTGAGTTAGTGAGGGAAATGTTGGAATATTGGGGCAACACATCATCATATCCATATTGATAAAGAATGTGTACAAAATTCCCGAGACCATCCATGCTCCCCCACGGCCAAGTGGAATAATATCAGACTTTTTAATGCCTTTAAGATCTTCTATCGATGTAACGGGTGTTGAGGAAGAATAGATGTCTGACGTTCTCAAGTGGAGGTTGGTTATCACAGGTGAACCAATTGATTCTACTGGAACCTGTTCATCTACCACATCTACAAACATTCCAAGATAGATCAGGTACACTTTATGTGGGCCCGGAACTTCACGTGTGAACAGTGCCTCCGGCCGTGCACAGGCCATAAGAACCCCGTTGATGTAAACAGTAACATACAGGCCCCTGTCCCTGGGCTTCAGAATCAACATGGTGACATTCATGAACGTCCTC----CTCCTACC-TCCTAAATGCGGGGAGAACGCGGCGGAAACCGATGTAGTGGAGGTGTAGATTTTTAGTCGCTGATTTGAAGCAGAGTTTAGCACCCATAGACATTCCTTGTTAAGAAATTGCCTCAGTTTCTCTATTTCTGATCCTACGCCGGTGGCCATGGCTGCGAGCTAAAACAAAGAGTTCCTC------GGCCAGTTCCAGGTGTAACACCCCTTTAATAACAAAGCCCCCTGGCAAAATCAGGACTA--TAGTCTTCTTACGTGACACCGCTACATGGATGTACGAGCCGTCACTTGCGAAGTGAATAAGATCTGCACTGGTTCCA---AGAATATTAGGTGTCCTTGTTGAAATGATGCGTCCCCAGATGGATGGTTTGGCTTCATACAGCGGGTGACTGTCTATCCAGGTGCATTCAGAGCTTTCTGGGCTAGAGTCAGGTTCTCCGG-----CTAAGGTGGCTTTCACCCAGGCACTTTCCCAGCTAACCCTTGTCTGTATTGTAAAGAACGCTTCTTCTAGAAGGTTAGAATCTTTATAGACCCGCGAATAATTGATGGGCAGGGTAACAGGTATTTCCTGT

a score=19216.0
s NC_006146.genome 109523 908 + 171096 CGTCGGTCAGGGCCCGTTTGGCCCCCTCAAAAAGAGACAGGTAGTAGAGCT-----GGAGCTCCCCCACGAGTCCACCACTGTCGTGAAACCTGAGGGCGGCCACGTGGAAGGGATTGTAGAGC-TCCG--GTCCTCCCTCCTCGCAGTAC---ACGGGCACGCTGGTGAAGGTGCCTCGCCGGCTAGGCCACCCGGGCAGGACGCCGCGCGCCGCAAACACGCGACAGGCCCCCGTGAGACCAGCCCGATCGCTGAAGAGGGTCTGACAGCAGACCACCTCGCAGTCCGGTACCCGATCGGGGCAGAGCTCCGC-CATGACCGTGTCTGGCACAAAAATGTGGACGAGGAGGGGGGTTCCCAGGCCGCTCAGCACCTGGTTGTCAACGTGGACATCCATAGCTCTCTCATGCGCTTGGCTACAGAGTCGTAGCGCTTGTTTCTTGTCGATTTAAATAACAGGGCCCCGTAGACGGTCTTTTGTGAGTAAATGGAGATGATGACATGGATGTAGAGGCTGAGGACCACATCCACCGCCTTATCGGAGTAGGCCCCTCGAAACAGTGACAGGCAACAGGGAAACACGAAGGAGACTAAGGCCGGGATGTGGGGCCTCAGGGCTCCGTCCTGATCAAAGATGGCCTCGCTGACCCCCGGGATAACATTCTCGTTCAAAAAGTAGTGATAGAGGTGGTTGACAACGGTCCGGACCAGGCCCTGGACCTGGTCCGGCTCCCACTTT--TCCCTTTGCTCCTGCGTGTCTTGGCGGATCTCTGTCCAGGGCCTCAGCGCCGGTTGGAGATGCGGCCCCATGCAGTTGCCCGTGAGGGCACACACCACCCCCTCGTGGGTCTCGATGAGGGTGCACTCGGGGGAGCCATCGCAGACGTGATACTCTCCGCAGCCCCAGCAGGCAAACA
s NC_004367.genome 102104 893 - 149696 CGTATGCCACAGCCCGCTTCGCGCCCTGAAAAAGAAGGAGATAATAGATGTATATGGAAGCCCCGTT----GTTTGC----ATCGGGGAACTTTATTACGACTACGTCAAAGGGGTTGTAGAGTATGCGTTGTCCCATCTCCTCGGTATACTTTACAGGAACACTGGTGAAAATACCGGTTCTTCCCCCCCGTCCACATAGCCTGCCCTTTTTAGAAAACATCCGAACAAAAGGAGTGGGTTCAGATAAACTATGAAAACGCGTCTGAACCCAGACATAGTCACATGCCGGCAATTCACC----TATAGTTTCGTGAATAAGATCATCCGGTAAAAAGATGTGAATCATT---GTTGCATCCGCCCCGATCAGGGTTTGGTTGTTAACGTGGACATCCATGCTTCACGCATGCGTTTTGCAACCAAGTCTGTCTTCTTGTTTCTCATTGATTTAAATAACATGCACCCGTATATTGTCCGGCGAGAGTAAATTGCTATAATTACATGGATGTATAGGCTAACAATTAGTCTCACAGAGTC-----TGTAGATTTCATGAGA----GGTAGGCAATAAGGGAAAACAAAAGAGATTAGAGCTGGGATATGTGGACGCAAGACACCGTCGTCATCAAACAGAGCAGCTTGGACACCGGGAATAACATTATCTTTTCTAAAGTAGGCATATAGGTGATTTGTGATGTTTAGCAGTAATGTTTGTATCTCCTCAGGATCCCACGTGGATTGATTTTCAGCTTCACATCTTGCACAA-----GTCCATGGCCTTACAACCGGCTTCAGATCTGGGCCCACATCCCTACCTGTCATGGCACAGACTACTCCATCATGGGTTTCAATAAGGTGACACTCAGAGGAGCCATCACATACATGATAGGTTTGGCATCCCTCACAAACAAACA

a score=51021.0
s NC_006146.genome 110591 1334 + 171096 TGACATTCCACCCCGGCCAGGTCCAGGAGGGTGCAGATGTTCTCCAGGCGCTGCACCTCGGAGACCTCCTGTTCAAAGAGGCTGCCCACCGCAGAGTAGACACTCGCCACGGTCCGGGTCAGGTCGGTGGGGTCCCAGCTCAGCAGCTCCGCAAACTCCCGCTCCCCGATAGTAACTCGCTTCTTCTCCTTCTGTGTTTCAGAGCATCCGGGGCCAGACATTCCACCTGCTGTTTGTGGACGAGGCCAACTTTATCAAGAAGGAGGCCCTGCCGGCTATCCTGGGCTTTATGCTTCAGAAGGACGCCAAGATTATCTTCATCTCGTCCGTCAATTCGGCCGATCAGGCCACCAGCTTCCTTTATAAGCTGAAGGACGCGCAGGAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATTTTGACATGCAGGACAGCATGGTCTCGTGCCCCTGCTTTCGCCTCCACATCCCGTCTTACATCACCATGGATAGCAACATCCGAGCGACCACCAACCTCTTTCTGGACGGGGCCTTTAGCACGGAGCTGATGGGCGACACCTCCTCCCTGAGTCACGGGAGCCTGAGCCGCACCGTGCGAGACGACGCCCTCAATCAGCTGGAGCTCTGCCGGGTCGACACCCTCAACCCCCAGGTGGCCGGGCGGCTGGCCTCCTCCCTCTACGTGTACGTGGACCCGGCCTACACCAACAACACCTCCGCCTCCGGCACCGGCATTGCCGCCGTGACTCACGACAGAACTGCCCCGGATAGGGTCATTGTCCTGGGCCTGGAGCACTTTTTCCTCAAGGACCTGACGGGGGACGCCGCCCTCCAGATCGCCACCTGCGCCGTGGCCCTCATCTCCTCCATCGCCACGCTGCACCCCCACCTGGAGGATGTGAAGATAGCAGTGGAGGGCAACAGCAGTCAGGACTCAGCCGTGGCCATTGCCTCCATCATCGGGGAGTCCTGCCCCCTGCCCTGCGCCTTCGTGCACACCAAGGACAAGACATCCAGCCTGCAGTGGCCCATGTACCTCCTGACCAACGAAAAGGCCAAGGCCTTTGAGAGGCTCATCTATGCCGTCAACACCGCCAGCCTCTCGGCCAGCCAGGTCACCGTGTCCAACACCATCCAGCTCTCCTTCGACCCCATCCTATACCTCATCTCTCAGATCCGGGCCATCAAGCCAATCCCCCTGCGCGACGGGACGTACACCTACACGGGCAAGCAGCGCAACCTATCCGACGACGTGCTGGTGGCCCTTGTCATGGCCCATTTTCTCGCAACAACACAGAGACACTCGTTCAAGAAAGTTA
s NC_004367.genome 103310 1325 - 149696 TGGCATTCAACACCCGTAATATCTAATAAGGTACAGATGTTTTCTAGCCTCTGGAACCCCTGACAGTCAGTCTCAAATAGTGGTAAAACTGATGAATACACGACAGATGTAATATGATCAAAGTCATTGGTTTTTAGCATAAGTACCCTCTGAAAGTCCAGTTCACTAAT---------TCTCGCCTCCTTTGTTTTCTCAGAGTATTCGGGGTCAGACATTTCACCTTCTGTACGTTGACGAGGCAAACTTTATTAAGAAGGAGGCACTTCCAGCTATTTTGGGTTTTATGCTTCAGAAGGATGCAAAGATAATCTTTATATCCTCCACCAACTCATCGGATCAGGCCACCAGTTTTCTATATCGCTTAAAGGACGCCCATGAGCGCCTGCTGAATGTTGTGAGTTATGTTTGTGATGATCACAGGGAGGAATTTGACATGCAAGACTCTATGGTGGCTTGTCCTTGTTTCAGACTGCGTATTCCCTGCTACATCACCCTGGACATAAATATACGCACTACTACCAACCTATTTTTGGAGGGTGCGTTTAGCACGGAGCTTATGGGTGATGCTACGTCCATTGCAGAGCAAGGTTTAAGTAGGATTATCGGGGAAGAAGCGCTTACTCAGCTAGAATTGTGTAGGGTTAACACACTTGAAAAGAGTGTGGTTGACCGGCTAGGGTCAACCCTATATGTGTACATAGATCCCGCCTATACTAACAACACGTCAGCTTCTGGGACTGGAATTGCCGCTGTGACCCTGGCCAGGCACAATCCTACACGAGTAGTCATTTTAGGCCTGGAGCATTTTTTCCTTAAGGATCTAACAGGCGATGCTTCCCTACAGATTGCCACATGTACCCAAACTCTTATCTCCTCCATAGTTAGCCTCCATCCCCATCTAACTGAAGTGAGAGTCGCCGTTGAGGGCAACAGCAGTCAGGATGCTGCGGTTGCCATAGCTACCATCTTGGACGACATATGTAATCTGCCCTGTTTGTTTGTTCATACACAGGATAAAGCCTCAAATCTACATTGGCCTATGTATCTCCTAACTGGAGAAAAATCCAAAGCGTTTGAAGCATTCATTTATGCTGTTAACACGGCCAGTATTTCTGCGAGTCAGGTCATTACATCAAACACTATCCAGCTCTCCTACGATCCAATATCTTACCTCGTGTCCCAGATTAAGGCAATCAAGTCAATTCCCCTGAGAGACGGAACTTACACCTACACTGGAAAGCAAAAAAACCTATCCGATGACGTCCTAGTCTCCCTGGTACTCGTTCACTATCTTGCAGTTTCACAGAAGCATACATTCAGGAAAATTA

a score=1952.0
s NC_006146.genome 112779  99 + 171096 TTTTATAGCCCTTGTCCACGC---------CCCCGGTG--TGCGCTACTGAACAACCACATACATCACCTCCTCCAAGTATGCAGGAAATGAGCGGTCCGAGAGCCGGTC
s NC_004367.genome 105233 110 - 149696 TTTTATGGCCATCTTCCAGGCGCGATTCTGCCTTGGCTCCTCTGTCACTTTACCTCCAGGAGAATCGCCTCCTCTTTGTAATTAGGGAAAGAGCGATCAGACAGCATGTC

a score=4547.0
s NC_006146.genome 113006 360 + 171096 TTGGCTTTGGAATTGAGCCAAAGTCTGGGCTCGTCCTATCGAAGAGATAATACGTCTCGTAGTGGCAGTGGTGATGCAGCACCATGGCGGCGCCGGCCAGCGCCCTCTGCATGTCCTGGACAAGGCGCCGTT-CCACCCGGCTGTCGGCACCGGTAATGTTGAATGTCCTTTT---CCTGTTTGTCTCTGCCTGGAGGTTGGAGCACCCGGCCTCGAAAAGCGTGGCAACATG---CAG-GGCGGCTGCCTCAAATCTCCCACGCCCCCCGAGGCTATCCGTGTTGTTGGGGAAATAAGTAACCCCGTTGATGACCACGGCCGGGATGAGAGTGTAGACTTCGCAGAAGGGATTGGCCGGACACCCAT
s NC_004367.genome 105516 360 - 149696 TTGGTGCTGCGATTGAACCCATTCCCTCTTTTCCCCCGTTAAACAGATAGAAAGTTTCATAGTGGCAGAAATTGTGAAGTACAAACCAGGCCTTGGCCAGGACCTGCTTCACATTATG--CAGGACTCTCTCACCACGTGGCT--CAGATGCTTTCAGAGAAGAGATCCTTCTGCCCCTGTTGGTTATAACATCTATGTTGGTGCAACCCGTTTTTATCATGGATACAACATGTTCCAGCGGGTGTTGGAAGGAAACGCTCAGGCCGGCAGA----ATTCGTGAAATTCGGAAAATAAGTCTCTCCTTCAATCTTTATAGCCGGAACCAGGGTGTAGACGTTGCAAAATGGCTTTGGTGGACAGCTAT

a score=3529.0
s NC_006146.genome 113899 92 + 171096 TTGTAAAACACTTCCACCCTCTCCCCGCTGGCCAGGACGCGCCGCTCGTGGACTACGCCGTCTTCCTCCCGGGTGATGGTATGGCTGACGAT
s NC_004367.genome 106202 92 - 149696 TTGTAAAAAACTTCCACGGTTTCTCCAGAGGACAGTTTCTGCTTCTCATGCACCACACCATCCTCTTCCCTACTAATCGTGTGGCTGATTAT

a score=213686.0
s NC_006146.genome 114040 5545 + 171096 [encoded data, 5591 characters]
s NC_004367.genome 106461 5511 - 149696 [encoded data, 5591 characters]

a score=1920.0
s NC_006146.genome 119718 64 + 171096 CACCTCTTCTCCTGGAGCACGTTCATACTGTCCTGGCCCAACAACGCCACCCTCCGGGAGATCA
s NC_004367.genome 112101 64 - 149696 CACTTGTTTTGCCTAGGGTCTCTTATGTTGAGTTGCCCCAATAACACTATCCTCCGAGAGCTTA

a score=126327.0
s NC_006146.genome 120360 5599 + 171096 [encoded data, 5732 characters]
s NC_004367.genome 112812 5588 - 149696 [encoded data, 5732 characters]

a score=67458.0
s NC_006146.genome 126400 4583 + 171096 [encoded data, 4737 characters]
s NC_004367.genome 119039 4497 - 149696 [encoded data, 4737 characters]

a score=3096.0
s NC_006146.genome 131373 73 + 171096 CCGCCTCCAAGGCCAAGGCAGTCTCAGCCCACCTCAAGTCCATCTTCTGCGAGGAATTACTGAATAAACGCGT
s NC_004367.genome 123887 67 - 149696 CCGCGCCCGAG---AATGTAGCCTCA---CACCTAAAGTCAATCTTTTGTGAAGAAATACTCAATAAACGTGT

a score=7193.0
s NC_006146.genome 137999 1039 + 171096 GTGGGCGTGTCCCGGGCCCCGCCCCGGG---------CCGGCAGGGGGTCCCCGTGGACAGGGCCGGGGGTTCCGGGGGCAGCCGCGACCCAGCGCGCCCCGTTCACGG--GGGAGGATCGCGGCCGGGCCTCC-CGGGGGCCCGGCGGGGTGGGGGGTGCGCCCCCAGCCGGACCCTGGTGC--------CAGGCAGGGACCTCGCGCCG---CCCGCTTCATGGGGGGGGAGGCCGCCGCAAGGACGCCGGGCCGGCTGGGGGTTGTGCA------CCCCCCGAGCGTCTGGA-CGACGCTGGCGACCCCGGCCAGCGCGCCTTCTTTTATTCACTTTT-----TGGGGGCG-----------------CTGT--GCAATACCTTAAGGTTT-GCTCAGGAGAGG-----------------GGGCTTCCTATTGGTT---AATTA---------------AGGTGTGTCATTTTAG-------------CCCGTTGGGT--TACCTGCAGGT-GTGTCCA-----------CAGGTGGGTGGTACCTGGAGGTGATGCTATTGGGATTAACGTGTGGGGGAGG--------AGCTAAGGTCCGCGAGATTTGGGGTAGC--GGAGCCTCAGGAGGGTCCCCTC---------------CATAGGGTTGAGCCAGGAGGGGGAGAAATTCTGCG---CCCCAATATACCTAGTGGGTGGAGCCTAGAGGTAGGTTTC---CATAGGGTT---------CCATT---ATCCTGGAGGTATCCTAACGCCGCCCCTATATTCCAGGTGGGTGGAGCTAGGTAGGATCCAGCTAGGTTTCTACCGGGTGCCCCCCTATCCTACCTCGAGGTGCGCCACCCTTCCTCCCTTCGTTATAATGGTAGCATAACCTATAGGTTATTAACCTAGTGGAGGAATAGGGTACTACAGCTGGGTATATACCTATGGGTATATACCTATAGGTATATAGGAACCTAGAGAAAGGGAACCCTATAGTGTAATCCCTCCCCCCCCTA-CCCCCCCCTCCTTACGGTTGCCTGAGCCCATCCCCCACCCCAGCACCCCGGGGTGACGTGGCACCCCTGCGTGCTTTTCAGGTGCATCACCTTTGCACATTTGGTCAGCTGACCGATGC--TCGCCACGCCCGGGTCATGACCTGGGCCAGCG-CCTCGTCCCGAGG
s NC_004367.genome 126110 1046 - 149696 GTGGG---GCTCCAGGCCCGGCCGTGGGGCTCCAGGCCCGGCCGTGGGACTCCA-GGCCCGGCCGTGGGGCTCCAGGCCCGGCCGTG-------GGGCTCCAGCCCCGGCCGTGGGGCTCCAGGCCCGGCCCATACTGCGGCCCAGAA-----------------CCGCCCAGCTCCTGGAGCTCCCAGCCCAGGCCAGGACCCCGCGCTTGTTCCCGGTTCATTCGGGGGGGGGCCGC------GACCTGGAACCTGTCCAGGGCCGAGCGGTCTAGCCGCTTGGGCGTCCAGAACGCCACTGA--ACCCGGGCAGGCGCGC-TCCTTATATTCAGTTCTGTCCTTGGGTGTGTCCCATTCTCTCTATTCCTATTGGTTAAACCTTAAGGTCTCACTCAGCTGAGTTATTCCTTCTGGTTTCTAGTGTTCCTATTGGTTCCTACCTATAGGTCCCACCCTACAGGTTAATCCTCCTGGTTCAATCTGGGCTCCTATTGGTTAATACCTGTAGGTTGTGACCCACAGGGTTACTCAGGTGGGTAAT-CCTGGAGGTAATTGCATTAGG-TGAACGGGAGGAGGGAGGGGTTTGCAGCTGAAATT---GAGAATGGGCGGAGCTAGAGACCTGCTGAAGCTCCGCCCTCTGGGTTGTAGTCCCATTGGGTTTAATTCAGTGGGGGGGGGGTTTGGGGTTCCCCCGATATACCTA------------------TAGGTTCCACCCACCGGGTTAAACCCCGCCCATTTTAATTCCAGCGGGATAC--------CCCCCCTATTCCAC-----TGCCGTT------TATCCTATAGAATTTCCGCTGGGTTCCAC--------------AGGAGGGTA---------CCCTTCGGTA----GGTACCCCTACCGGTAGGT-ATT------------------GGTACTACAGGCGGGTATATATA-------ATATATATATAGG------AGAACCTATAGGA--TTAACCTAGAAGAGATACCTAACCCCCCCCTAACCCCCCCCTTCCCAAATGTAGGTCACCCCATCCCCCACTC-------------TCCATTGGCCCCATTGCGTGCCTTTCACCTCTGTCATCATTACACATTCAG--AGCACACTCATTCCTCCGGCATTCAGGGGTCA--ACCGGGGGACACGTCCCCGTCCCGCGG

a score=45734.0
s NC_006146.genome 145114 1688 + 171096 ACGATGTTCCCGTTAAAAGTCTTGTTGATTCTCTCGAAGGTGGGCAGGGAGGAGCTCTCCACCACAATGTTCCCGGGCAGCGTGAGCGCGCAGCCCTGGCGCTGGATGTATCTCCTCATGAGGGTGCCGAGGGATGGGTCCCCGGCGTAGATGAAGAAGGCCTGGGCCAGGCTCTGGCCGGTCACTATCTCTATGGGTTTGTTGGAGATGTTGCGGACGGTTAGCTTGAGGGGCTGGCCCGGCTTCCACTCCTGAGGGTAGACGTAGAAGACCGGGTTGGTGGGGTGGGACACGACCAGCGCCGTGATCTTGGAGCTGAGGGGGGCCTCGTAGGTGTTGTTGTATTCTAGCTCCGTGATGAAATTGGGAGGAATGATCACGGGGGAGCCAAAGTAGCGAATGTCTGTGGACTCTCCATCCCAGCGCCAGGTGCTCTTGGGGTAGGGGTTGTAGCGGAAGGCAATGATCACGTCGTCCAGGAGTGTCATGCCCACCTTGACGTTTAGAGGGCCCTCTCGT---TTCAGGTCC------GGCGTGTCCACGGAGACTCTGACGTAGCCCTTGCCGCGGCGGACGGCGTTGACCGGACACACCTTTCCCGGGAACGTGTGGATGCGCGCGTAGGACTTCAGGAACGGAGTCGTGTGCTGCGCCAGCAGGTAAGGCAGGCACTCGTCCTGGCTGGAGACGGGCGAGCCACTTAGGAAGATCTGGGGCTCGCTGGTGTTCAAATTGTCCCCGCTCTGGGAGCAGGAGCGCGTCAGCTTGATGTCGCTCTGGCCGGGCAGGATCTGGAGGTAGAGGTAGGGGTTCTTGACCAGTCTGATGGGCACTATGTACCAGGTGAGCCGCCCCTTCTCTATGAAGAGGCTTCGTGGGTTCAGCACGCTCAGGACGATGTCCTGGTCCGAGTGCATGACAAAGAAGGGCTTCAGGAAGACCTCGTTGTCCTCCGCCCCAAAGAACAGAAACGAGCACGTAAAGTAGCGGCTGCCGTAGGTGGTCGCGTTGAAGGAGAAGGAGGGGAACACAAAGCTGATTATCTGGCCCACCGAGGGGCAGGGGGGCAGCTCCTGGCACTGCGCGTCCAGCTGCAGCACCTGCTTGTTGGTGACCCGGACGTACGAGGCAAAGATCTCGTATTTCCACACCCCCCTCACGAAGCTCGTCTCTGGTTTTTCAGCGGGACGCAGGCGGCGGAGGCTGCTTCTGAATGAC---------GAGCGCCTGGACGCTAGTGCTGCATGGGCTCCTCCGGGGTAAGCGGCGGCCATGGCTGCAGTTCTTCCACGGGTAAGGTTAGAGTCGGTGGACGCGCGACGTGGCGGCCCCAGTGGAGCTCTCCGCTCGTTAGC---TGGTAGAATATCCGTCC------GGCGTCTAGACTGTCGCTCCTCTTGGCCGGCCAGAAGAGCGCGAAACCGAGCCTGACTCCCGGGCCTAC-GTGCAGTGGCTTGTCCCCGCAGTTGTAGATGGCCAATTTTATGGGCGAGT---GGGCGGTCCACACACGCGGGCGCAGCACCCATTGGTTGCAGGCGGCCTCCTGGAACGTAAACCCGGAGAGCGAAGGCGCCGCGCCCTGGAGCTG-----GCCCTGCGCCACTACTTGTAG------CTCCTCCCTGGGAGGGACGACAACGTCGCGCTCTGGGTGGAGGGGAAACAGCGTCCAGCCCCCGGCCAGGGTCACGAGGCCTGGGTCC
s NC_004367.genome 128933 1700 - 149696 ACCATGTTCCCGTTGCATGATTTGTTGATTCTTTCAAAGGTTGGTAAGCAGCCTATGACAGCCATAATATTTCCTGGAAGAGTTAGCACATGTTGATGCCGGTGAACTGCCCGTTTCATCATTGTGCTTAACCCTTCCCCGCTGTTGTAAATAAAAAATGCCTGTGCTAACGGCTGGCCGGTAATAATAGTGATGGGAAAGTTTGAGATGTTTCGCACCATGAGCTTAATTGTTTGGCCGGGCTTCCATTCCTGCGGATAAATGTAAAATACTTGGTTGTTAGGGTGGGACAAAATGAGCGCTGTGATCTTTGTGCTTAGAGGAGTTTCATAAGTGTTGTTATAGTCAACACTTGTTATGAAGTTTGGGGGGATGATCACGGGAGAACCAAAATATCGAATTTCAGTGCTCTCCCCATCCCATCTCCAGGTGCTTTTAGGGTAGGGATTGTACTTGAAAGCTAGGATCACGTCGTTGAGTAATGTCATTCCAATTTT------TATTGGCTCCTCTCGTGCCTTCGGTTTTTCTGTGGGCACATCCACTGAGACCCTGACACAGGTTTTGTCTAGTCTCAGGGCGTTTACTGGGCACACTTTTCCTGGGAATGTATGGATTCTGGCAAATGGTTTGCTGAATGGCCGCGTTCGTTGTGCCAGTAGAAATGGCAAAGATTCATCCTGCGTGCTCACCGGAACTCCACTTAGGAAAATTTGGGGCTCGTTCGTTGACAGCTTATCTCCCCATTGCGAGCATGATGTTTCCAAATTTATGTTGCCCTTGTTTGGAAATATCCTAAGGTAAAGGTATGGAGTTTTGACCAGTCTCAAGGGGACCATATACCAGATGAACTTTCCCTTATCAATGTATAAATTTCTGGGGTTGAGTACCTGCAGTTCCACTTCTTGTTCTGAATTAAGCACAAAAACAGGTTTCAGGTACACTTCATTTTCCGTGTCTCCGAAAATCACAAATGCGCAGGTGAAGTAACGGCTGCCGTAGGTCGCTGAGTTGAAGTTGAATGCTGGGAATTGATATCTTATGATCTGACCAACAGAAGGACACGGGGGGAGTTCTTGACATGTAGCATCGAGTTCCAGAACTTGTTTGTTTGTTATTTTGACATGAGATTTGTATAGTTCATATTTCCACATACCTCTTGTAAATGTTGTTTCAGGATGCTCTTCTCGGCGGCTAATACGGAAGCTGTGTCGTAGGGACAAAGAGCGTGAGCGTTTG---GCTAGTGCTGCATGGGCAGATCCGGGGAAAGAGTCGCCCATGGTGACAGAGAGTCCACGGGAAGTTCCAGTGATATGGGTAACACAACGGCAGCACCCCAGTGGA---TACACCTTGATATCCTGTCGTAGTAAATGAGTCCCTCGGAGGTGTTTACTCCATC---------AGTCGGCCAAAAGATGGCAAAGCCCAGTCTGTCTCTGCGGTTGATGGTTAGGTAAGTAGTGCCCG-GGTTATATACTGTCA---TAAAGAGCGTCCCTGGGGCGTGCCACATGTTTGGGCGGAGCACCCACCGGTCGCAACAGGCATCCTGAAAAACAAAACCAG-----TATGGCCTTGCATTGGTGGGCCGTTAATGACCTGCCCAGCCGCTTTGATCACGGCCTCTTCTCCAGGGCTAATCATCGTGGTGGTATCCGGATATAATGGAACCAACGTCCAGTCTGTGCCTCTTGTCACCACGCCCATGTCC

a score=2130.0
s NC_006146.genome 147451 165 + 171096 CAAACATGGGAGCGTGCACCTGGAAGACGCAGCTGGGGTAGATCTTGACATCTTTGC-GCGTGTCGGCGGCCGCCAGACACGGGAGTCCCGAGTTCACGGCGGGCACCTCCCAGAGCGAGCCCACCAGCCCGTACCTGGCCACGGCCAGGGCCTCGTAGGCCGAGA
s NC_004367.genome 131273 165 - 149696 CAAACAGAGGAGCGTGGATGTCAAACGCGCATGATGGGATGATGCGTACATCTTTGCTAGGTTTATGCGGTAG-GATGCATTGTAAAGTTGATTTAATTTCTTCAGTGTCCCACAGAGATTTCACTAAGCCGTATCGTGCTACAGAGAGAGCTTCGTATACGGAAA

a score=7916.0
s NC_006146.genome 147798 724 + 171096 TGTTCTTGAGGGAGTCCATAAAGTGGTTGAAGCTCCAGGCGTAGAGAAGGATGAGCAACAGGGCCAGGAAGGCGGCGGGGCCTGGGTAATAGCGGGCCGCGAGCGACTCTGTGCAAGCGAAGCCCAGGCTCCCGGCCTCTCCCAGGAAGAGCAGCGGCAGTGACAGCATGAACCAGGAGAAGGCGCAGATGAGGCCGGTGAAGGCGACGTTGCAGATCAGGCGCCACTTTCTTCCGAATTTTGTGTGCAGGAGTTTCCAGATGATGATGAGGGTGAGGATGACAATGAGGATAC--CCGC-CAGGAGATAGCAGCCGGCCTTCATTCCCTGGATGGTCGTGTGCATGGCCCTCGTGGGGCCTTCCCTGCACATGTTGGGGCCTCTGTTGAGATCGGCG------TTGGGGCCCATGATGATGAGGAGGATGATGATGAGCAGGAGCACCAGGGCAAAGACCCCGCCCAGGTAGAGGTACACTGTCCTGTTGGAGTGCCGCATGGGCTTCGTG---CTGG---------TCAGGGCCCGGGTCTTCTCTACGGCCATGCCCACGTGCGTCCAGACGGAGCACATCAGGCCCAGGAACATCAGGTTCTGGGTCAGTATGCAGAGGCCGGTGGTTGAGAATTCCTGGATCATTTTCCCCAGCACCCAGAACAGGAGCTCCAGCAGGAGCGCGGAGAGCCAGACGTCCATTCTATGCGCAAACTTCCTAACCAGGGCGATGAACAGGAG
s NC_004367.genome 131628 724 - 149696 TGTTCTTCAAGTCATCTATAAACTGTCTGTGTGCCCAAATGTAAAGAAGCAGTAAGAGTAATATGAGAAGGGATCCAAAGGCGTGATAGTATCGAGTCATGAGCGATGATGGGCAAAAGAATCCAAGGTTGCCTGGCTCAGGGCGGAACACCAGGGGTGCGGCAAGTAACAGCCAACAGGTGGCTCCAATTATTCCGGTGAACATCACATTGCAGATTATGCGCATGCGCGTGGAAAGGCGCGTGTGCCAAATTTTGTATGTGATGTAGCACGTGGCTATAATTGTTGCTACACAACAGCACAGGAAAAAGAAGCC---CTTTGCTGCTTGACGAATGGCATGTCCAGCTTGTGTTGCCCCTTCTCGACACAGATTGGGGCCTCTATTTAGATTTGAGGAAATTCCGGCTTCAAACACACTAGCCAATACCAGTATAAACACGGTGATCAATGTTAGGAGCAGATACA--TAATGATGCAT----CTATTG------CTCACCGGTTTGATGGTTTTGGCAGATACCATTAGAGCACGA------TGAGCTGCCATCCCACTGTGATGGAACCCAGAAAGCAATAAGCTCATTAACATCATGTGCTGGGTTAACATGCAGAGTCCGGTGTTTGAAAATTCTTGGATTAGCTTTCCTAGTAACCAGAGAAGAGTGTCCATAAACATTACAGCCAGCCACCAGTCTATGGAATCTTTCAGCTTTCTGATTAGCAACAGAAACAGTAG

a score=365976.0
s NC_006146.genome 149282 11480 + 171096 [encoded data, 11671 characters]
s NC_004367.genome 134059 11464 - 149696 [encoded data, 11671 characters]

##eof maf
