beast-mcmc (1.10.4+dfsg-6) unstable; urgency=medium

  * Fix clean target
    Closes: #1043640
  * Fix watch file
  * Standards-Version: 4.7.0 (routine-update)
  * d/copyright: review thanks to lrc

 -- Andreas Tille <tille@debian.org>  Sat, 21 Dec 2024 17:38:11 +0100

beast-mcmc (1.10.4+dfsg-5) unstable; urgency=medium

  * Team upload.
  * Refresh ignore_mac_install.patch.
  * Adjust update-ejml.patch to build with libejml-java 0.41.

 -- Andrius Merkys <merkys@debian.org>  Thu, 24 Nov 2022 02:40:16 -0500

beast-mcmc (1.10.4+dfsg-4) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Tue, 01 Nov 2022 19:49:33 +0100

beast-mcmc (1.10.4+dfsg-3) unstable; urgency=medium

  [ Debian Janitor ]
  * Apply multi-arch hints.
    + beast-mcmc-examples: Add Multi-Arch: foreign.

  [ Andreas Tille ]
  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * watch file standard 4 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 01 Oct 2021 12:46:38 +0200

beast-mcmc (1.10.4+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Migrating to libejml-java 0.38.

 -- Andrius Merkys <merkys@debian.org>  Wed, 13 Nov 2019 01:19:29 -0500

beast-mcmc (1.10.4+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Exclude Latex doc creation
  * New Build-Depends: libejml-java
  * New versioned Build-Depends: libhmsbeagle-java (>= 3.0.2)
  * Standards-Version: 4.2.1
  * Do not try to install mac and windows build

  [ Jelmer Vernooĳ ]
  * Use secure copyright file specification URI.
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Tracer is not build in separate build_tracer.xml any more
  * Upstream does not ship PDF docs any more thus drop -doc package
  * Versioned (Build-)Depends: libhmsbeagle-java (>= 3.1.2~)

 -- Andreas Tille <tille@debian.org>  Tue, 18 Dec 2018 15:52:51 +0100

beast-mcmc (1.8.4+dfsg.1-3) unstable; urgency=medium

  [ Steffen Moeller ]
  * d/control: Standards-Version: 4.1.3 (no changes needed)
  * d/u/metadata:
    - added RRIDs
    - added \n to end of file

  [ Andreas Tille ]
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.1.4
  * debhelper 11
  * Build-Depends: texlive-fonts-recommended

  [ Adrian Bunk ]
  * Fix encoding issues that caused FTBFS with TeX Live 2018
    Closes: #896483

 -- Andreas Tille <tille@debian.org>  Sat, 19 May 2018 08:28:51 +0200

beast-mcmc (1.8.4+dfsg.1-2) unstable; urgency=medium

  * Architecture: any
    Closes: #780428
  * debhelper 10
  * Standards-Version: 4.1.0 (no changes needed)
  * hardening=+all
  * d/rules: do not parse d/changelog

 -- Andreas Tille <tille@debian.org>  Mon, 04 Sep 2017 09:58:57 +0200

beast-mcmc (1.8.4+dfsg.1-1) unstable; urgency=medium

  * Drop packaging tools from upstream source
  * Add missing copyright
  * Fix section for all binary packages
    Closes: #829174

 -- Andreas Tille <tille@debian.org>  Fri, 01 Jul 2016 11:08:37 +0200

beast-mcmc (1.8.4+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debian/rules: export LC_ALL=C.UTF-8 to cope with encoding issues
  * Upload to unstable (main)

 -- Andreas Tille <tille@debian.org>  Tue, 28 Jun 2016 09:26:11 +0200

beast-mcmc (1.8.3+dfsg-1) experimental; urgency=medium

  * New upstream version
  * Upload to official Debian (experimental)
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Thu, 02 Jun 2016 14:41:23 +0200

beast-mcmc (1.8.2-1) unstable; urgency=medium

  * Adapt d/watch to changed release names
  * Rename new binary tracer to beast-tracer
    Closes: #813086

 -- Andreas Tille <tille@debian.org>  Fri, 29 Jan 2016 16:03:31 +0100

beast-mcmc (1.8.2~754b844-2) unstable; urgency=medium

  * Depends: libnetlib-java
  * Force exact version match with libnucleotidelikelihoodcore0
  * Add mtj.jar explicitly to classpath in wrapper script
  * Build tracer.jar as well

 -- Andreas Tille <tille@debian.org>  Thu, 28 Jan 2016 10:39:20 +0100

beast-mcmc (1.8.2~754b844-1) unstable; urgency=medium

  * New upstream version
  * d/watch: Point to Github (moved from Google Code)
  * Build-Depends: libcolt-free-java (instead of libcolt-java which leaves
    libmtj-java the last remaining dependency from contrib)
  * drop debian/get-orig-source since uscan can deal with all issues
  * d/copyright:
     * Adapt source location
     * More Files-Excluded
  * Bumped version in versioned Build-Depends: libhmsbeagle-dev
    (>= 2.1.2+20150609)
  * Bumped version in versioned Build-Depends: libjam-dev
    (>= 0.1.20140824)
  * Moved from SVN to Git

 -- Andreas Tille <tille@debian.org>  Sun, 19 Jul 2015 20:15:51 +0200

beast-mcmc (1.8.0-1) unstable; urgency=medium

  * New upstream version
  * libnucleotidelikelihoodcore0: Architecture: amd64
  * d/watch: Stick to 1.x series of beast-mcmc
  * cme fix dpkg-control
  * fix encoding issue
  * Explicitly add multiarch library PATH to wrapper script to make sure
    libhmsbeagle-jni will be found
  * Add test but do not add autopkgtest control file for the moment
    (since contrib is not tested anyway)
  * Fix package description
    Closes:  #716790

 -- Andreas Tille <tille@debian.org>  Tue, 30 Sep 2014 18:15:36 +0200

beast-mcmc (1.7.5-1) unstable; urgency=low

  * New upstream version
  * Add debian/README.source explain why we stick to 1.7.x series for
    the moment

 -- Andreas Tille <tille@debian.org>  Thu, 30 May 2013 15:04:56 +0200

beast-mcmc (1.7.4-2) experimental; urgency=low

  * Add copyright license info  for file (Closes: #698497).
   - src/dr/math/matrixAlgebra/RobustSingularValueDecomposition.java

 -- Olivier Sallou <osallou@debian.org>  Sat, 23 Feb 2013 20:55:28 +0100

beast-mcmc (1.7.4-1) experimental; urgency=low

  * New upstream version (adapted patches)
  * debian/{control,rules}: use default java implementation
    thanks for the patch to James Page <james.page@ubuntu.com>
    Closes: #683509
  * debian/control:
     - rename beast-mcmc-lib to libnucleotidelikelihoodcore0
     - Standards-Version: 3.9.4 (no changes needed)
     - do not depend from xterm any more
     - versioned (Build-)Depends from libhmsbeagle-java
  * Remove now unneeded lintian overrides
  * debian/patches/create_soname.patch: Create soname for library
  * debian/rules: silence pdflatex for better readable build logs

 -- Andreas Tille <tille@debian.org>  Mon, 17 Dec 2012 16:43:17 +0100

beast-mcmc (1.6.2-3) unstable; urgency=low

  * rename pixmap for menu to avoid name space conflict
    Closes: #680483

 -- Andreas Tille <tille@debian.org>  Fri, 06 Jul 2012 11:30:19 +0200

beast-mcmc (1.6.2-2) unstable; urgency=low

  * debian/control: rename beast-doc to beast-mcmc-doc
    Closes: #679394
    For consistency reasons also rename beast-examples to
    beast-mcmc-examples

 -- Andreas Tille <tille@debian.org>  Fri, 29 Jun 2012 11:24:51 +0200

beast-mcmc (1.6.2-1) unstable; urgency=low

  * Initial release. (Closes: #552101)

 -- Andreas Tille <tille@debian.org>  Tue, 05 Jun 2012 14:38:11 +0200
