&dhucpackage; &dhsection;

&dhpackage;

Eisen-clustering of microarray data

          &dhpackage;

          -f filename
          -l 0|1
          -u jobname
          -g [0..9]
          -e [0..9]
          -m [msca]
          -k number
          -s 0|1
          -x number
          -y number

## OPTIONS

`-h``--help`

- Show summary of options.

`-f `filename``

- file loding

`-u `jobname``

- Allows you to specify a different name for the output files (default is derived from the input file name)

`-l `0|1``

- Specifies whether to log-transform the data (default is 0, no log-transform)

`-k `number``

- Specifies whether to run k-means clustering instead of hierarchical clustering, and the number of clusters k to use (default: 0)

`-x `number``

- Specifies the horizontal dimension of the SOM grid (default: 2)

`-y `number``

- Specifies the vertical dimension of the SOM grid (default: 1)

`-s `0|1``

- Specifies whether to calculate an SOM instead of hierarchical clustering (default: 0)

`-v` `--version`

- Show version of program.

-g [0..9] Specifies the distance measure for gene clustering 0: No gene clustering 1: Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4: Pearson correlation, absolute value 5: Spearman's rank correlation 6: Kendall's tau 7: Euclidean distance 8: Harmonically summed Euclidean distance 9: City-block distance (default: 1)

-e [0..9] Specifies the distance measure for microarray clustering 0: No clustering 1: Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4: Pearson correlation, absolute value 5: Spearman's rank correlation 6: Kendall's tau 7: Euclidean distance 8: Harmonically summed Euclidean distance 9: City-block distance (default: 0)

-m [msca] Specifies which hierarchical clustering method to use m: Pairwise complete-linkage s: Pairwise single-linkage c: Pairwise centroid-linkage a: Pairwise average-linkage (default: m)

## SEE ALSO

mapletree (1), smile (1).

## AUTHOR

This manual page was written by &dhusername; &dhemail; for the &debian; system (but may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the &gnu; General Public License, Version 2 any later version published by the Free Software Foundation.

On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.