/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2024 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#pragma once

#include <QMutex>

#include <U2Core/DNASequenceObject.h>
#include <U2Core/Task.h>
#include <U2Core/U2Region.h>

#include "ORFFinder.h"

namespace U2 {

class U2ALGORITHM_EXPORT ORFFindTask : public Task, public ORFFindResultsListener {
    Q_OBJECT
public:
    ORFFindTask(const ORFAlgorithmSettings& s, const U2EntityRef& entityRef);

    void run() override;
    void onResult(const ORFFindResult& r, U2OpStatus& oss) override;

    QList<ORFFindResult> popResults();

    const ORFAlgorithmSettings& getSettings() const {
        return config;
    }

private:
    ORFAlgorithmSettings config;
    U2EntityRef entityRef;
    QList<ORFFindResult> newResults;
    QMutex lock;
};

}  // namespace U2
