/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2025 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#pragma once

#include <U2Core/SaveDocumentTask.h>

#include <U2Lang/LocalDomain.h>
#include <U2Lang/WorkflowUtils.h>

#include "WeightMatrixAlgorithm.h"

Q_DECLARE_METATYPE(U2::PWMatrix)
Q_DECLARE_METATYPE(U2::PFMatrix)

namespace U2 {
namespace LocalWorkflow {

class PWMatrixIOProto : public IntegralBusActorPrototype {
public:
    PWMatrixIOProto(const Descriptor& desc, const QList<PortDescriptor*>& ports, const QList<Attribute*>& attrs = QList<Attribute*>());
    virtual bool isAcceptableDrop(const QMimeData*, QVariantMap*) const = 0;
    bool isAcceptableDrop(const QMimeData*, QVariantMap*, const QString& urlAttrId) const;
};

class ReadPWMatrixProto : public PWMatrixIOProto {
public:
    ReadPWMatrixProto(const Descriptor& desc, const QList<PortDescriptor*>& ports, const QList<Attribute*>& attrs = QList<Attribute*>());
    virtual bool isAcceptableDrop(const QMimeData*, QVariantMap*) const;
};

class WritePWMatrixProto : public PWMatrixIOProto {
public:
    WritePWMatrixProto(const Descriptor& desc, const QList<PortDescriptor*>& ports, const QList<Attribute*>& attrs = QList<Attribute*>());
    virtual bool isAcceptableDrop(const QMimeData*, QVariantMap*) const;
};

class PWMatrixReadPrompter : public PrompterBase<PWMatrixReadPrompter> {
    Q_OBJECT
public:
    PWMatrixReadPrompter(Actor* p = 0)
        : PrompterBase<PWMatrixReadPrompter>(p) {
    }

protected:
    QString composeRichDoc();
};

class PWMatrixWritePrompter : public PrompterBase<PWMatrixWritePrompter> {
    Q_OBJECT
public:
    PWMatrixWritePrompter(Actor* p = 0)
        : PrompterBase<PWMatrixWritePrompter>(p) {
    }

protected:
    QString composeRichDoc();
};

class PWMatrixReader : public BaseWorker {
    Q_OBJECT
public:
    static const QString ACTOR_ID;
    PWMatrixReader(Actor* a)
        : BaseWorker(a), output(nullptr) {
    }
    virtual void init();
    virtual Task* tick();
    virtual void cleanup() {
    }
private slots:
    void sl_taskFinished();

protected:
    CommunicationChannel* output;
    QStringList urls;
    QList<Task*> tasks;
    DataTypePtr mtype;
};

class PWMatrixWriter : public BaseWorker {
    Q_OBJECT
public:
    static const QString ACTOR_ID;
    PWMatrixWriter(Actor* a)
        : BaseWorker(a), input(nullptr), done(false), fileMode(SaveDoc_Overwrite) {
    }
    virtual void init();
    virtual Task* tick();
    virtual void cleanup() {
    }

protected:
    CommunicationChannel* input;
    QString url;
    QMap<QString, int> counter;
    bool done;
    uint fileMode;
};

//////////////////////////////////////////////////////////////////////////
// PFMatrix
//////////////////////////////////////////////////////////////////////////

class PFMatrixIOProto : public IntegralBusActorPrototype {
public:
    PFMatrixIOProto(const Descriptor& desc, const QList<PortDescriptor*>& ports, const QList<Attribute*>& attrs = QList<Attribute*>());
    virtual bool isAcceptableDrop(const QMimeData*, QVariantMap*) const = 0;
    bool isAcceptableDrop(const QMimeData*, QVariantMap*, const QString& urlAttrId) const;
};

class ReadPFMatrixProto : public PFMatrixIOProto {
public:
    ReadPFMatrixProto(const Descriptor& desc, const QList<PortDescriptor*>& ports, const QList<Attribute*>& attrs = QList<Attribute*>());
    virtual bool isAcceptableDrop(const QMimeData*, QVariantMap*) const;
};

class WritePFMatrixProto : public PFMatrixIOProto {
public:
    WritePFMatrixProto(const Descriptor& desc, const QList<PortDescriptor*>& ports, const QList<Attribute*>& attrs = QList<Attribute*>());
    virtual bool isAcceptableDrop(const QMimeData*, QVariantMap*) const;
};

class PFMatrixReadPrompter : public PrompterBase<PFMatrixReadPrompter> {
    Q_OBJECT
public:
    PFMatrixReadPrompter(Actor* p = 0)
        : PrompterBase<PFMatrixReadPrompter>(p) {
    }

protected:
    QString composeRichDoc();
};

class PFMatrixWritePrompter : public PrompterBase<PFMatrixWritePrompter> {
    Q_OBJECT
public:
    PFMatrixWritePrompter(Actor* p = 0)
        : PrompterBase<PFMatrixWritePrompter>(p) {
    }

protected:
    QString composeRichDoc();
};

class PFMatrixReader : public BaseWorker {
    Q_OBJECT
public:
    static const QString ACTOR_ID;
    PFMatrixReader(Actor* a)
        : BaseWorker(a), output(nullptr) {
    }
    virtual void init();
    virtual Task* tick();
    virtual void cleanup() {
    }
private slots:
    void sl_taskFinished();

protected:
    CommunicationChannel* output;
    QStringList urls;
    QList<Task*> tasks;
    DataTypePtr mtype;
};

class PFMatrixWriter : public BaseWorker {
    Q_OBJECT
public:
    static const QString ACTOR_ID;
    PFMatrixWriter(Actor* a)
        : BaseWorker(a), input(nullptr), done(false), fileMode(SaveDoc_Overwrite) {
    }
    virtual void init();
    virtual Task* tick();
    virtual void cleanup() {
    }

protected:
    CommunicationChannel* input;
    QString url;
    QMap<QString, int> counter;
    bool done;
    uint fileMode;
};

}  // namespace LocalWorkflow
}  // namespace U2
