/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2025 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#pragma once

#include <U2Lang/LocalDomain.h>
#include <U2Lang/WorkflowUtils.h>

namespace U2 {
class MsaConsensusAlgorithm;
class ExportConsensusTask;
class SpinBoxDelegate;
namespace LocalWorkflow {
using namespace Workflow;

class ExtractMSAConsensusTaskHelper;

class ExtractMSAConsensusWorker : public BaseWorker {
    Q_OBJECT
public:
    ExtractMSAConsensusWorker(Actor* actor);

    void init();
    Task* tick();
    void cleanup();

protected:
    virtual ExtractMSAConsensusTaskHelper* createTask(const Msa& msa) = 0;
    virtual void finish() = 0;
    virtual void sendResult(const SharedDbiDataHandler& seqId) = 0;
    ExtractMSAConsensusTaskHelper* extractMsaConsensus;
private slots:
    void sl_taskFinished();

private:
    bool hasMsa() const;
    Msa takeMsa(U2OpStatus& os);
};

class ExtractMSAConsensusStringWorker : public ExtractMSAConsensusWorker {
    Q_OBJECT
public:
    ExtractMSAConsensusStringWorker(Actor* actor);

protected:
    virtual ExtractMSAConsensusTaskHelper* createTask(const Msa& msa);
    virtual void finish();
    virtual void sendResult(const SharedDbiDataHandler& seqId);
};

class ExtractMSAConsensusSequenceWorker : public ExtractMSAConsensusWorker {
    Q_OBJECT
public:
    ExtractMSAConsensusSequenceWorker(Actor* actor);

protected:
    virtual ExtractMSAConsensusTaskHelper* createTask(const Msa& msa);
    virtual void finish();
    virtual void sendResult(const SharedDbiDataHandler& seqId);
};

class ExtractMSAConsensusTaskHelper : public Task {
    Q_OBJECT
public:
    ExtractMSAConsensusTaskHelper(const QString& algoId, int threshold, bool keepGaps, const Msa& msa, const U2DbiRef& targetDbi);

    void prepare();
    U2EntityRef getResult() const;
    QByteArray getResultAsText() const;

private:
    MsaConsensusAlgorithm* createAlgorithm();
    QString getResultName() const;

    const QString algoId;
    const int threshold;
    const bool keepGaps;
    Msa msa;
    const U2DbiRef targetDbi;
    U2Sequence resultSequence;
    QByteArray resultText;
};

class ExtractMSAConsensusSequenceWorkerFactory : public DomainFactory {
public:
    ExtractMSAConsensusSequenceWorkerFactory();

    Worker* createWorker(Actor* actor);

    static void init();

    static const QString ACTOR_ID;
};

class ExtractMSAConsensusStringWorkerFactory : public DomainFactory {
public:
    ExtractMSAConsensusStringWorkerFactory();

    Worker* createWorker(Actor* actor);

    static void init();

    static const QString ACTOR_ID;
};

class ExtractMSAConsensusWorkerPrompter : public PrompterBase<ExtractMSAConsensusWorkerPrompter> {
    Q_OBJECT
public:
    ExtractMSAConsensusWorkerPrompter(Actor* actor = nullptr);

protected:
    QString composeRichDoc();
};

class SpinBoxDelegatePropertyRelation : public AttributeRelation {
public:
    SpinBoxDelegatePropertyRelation(const QString& relatedAttrId)
        : AttributeRelation(relatedAttrId) {
    }

    virtual RelationType getType() const {
        return PROPERTY_CHANGER;
    }
    SpinBoxDelegatePropertyRelation* clone() const;

    virtual QVariant getAffectResult(const QVariant& influencingValue, const QVariant& dependentValue, DelegateTags* infTags, DelegateTags* depTags) const;
    virtual void updateDelegateTags(const QVariant& influencingValue, DelegateTags* dependentTags) const;
};

}  // namespace LocalWorkflow
}  // namespace U2
