/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2025 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#pragma once

#include <U2Core/AnnotationData.h>

namespace U2 {

class U2ALGORITHM_EXPORT CDDNames {
public:
    static QString CDD_DB() {
        return "CDD";
    }
    static QString PFAM_DB() {
        return "Pfam";
    }
    static QString SMART_DB() {
        return "Smart";
    }
    static QString COG_DB() {
        return "Cog";
    }
    static QString KOG_DB() {
        return "Kog";
    }
    static QString PRK_DB() {
        return "Prk";
    }
    static QString TIGR_DB() {
        return "Tigr";
    }
};

class DNAAlphabet;

class U2ALGORITHM_EXPORT CDSearchSettings {
public:
    CDSearchSettings()
        : ev(0.01f), alp(nullptr) {
    }
    float ev;
    const DNAAlphabet* alp;
    QByteArray query;
    QString localDbFolder;
    QString dbName;
};

class Task;

class U2ALGORITHM_EXPORT CDSearchResultListener {
public:
    virtual ~CDSearchResultListener() {
    }
    virtual QList<SharedAnnotationData> getCDSResults() const = 0;
    virtual Task* getTask() const = 0;
};

class U2ALGORITHM_EXPORT CDSearchFactory {
public:
    virtual ~CDSearchFactory() {
    }

    virtual CDSearchResultListener* createCDSearch(const CDSearchSettings& settings) const = 0;
};

}  // namespace U2
