Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: BWA-MEM2
Upstream-Contact: Heng Li <lh3@me.com>
Source: https://github.com/bwa-mem2/bwa-mem2/
Files-Excluded: .git

Files: *
       debian/patches/*
Copyright: 2019 Vasimuddin Md <vasimuddin.md@intel.com>
           2019 Sanchit Misra <sanchit.misra@intel.com>
           2019 Intel Corporation
           2019 Heng Li <hli@jimmy.harvard.edu>
           2007-2013 Cisco Systems, Inc
           2020-2025 Michael R. Crusoe <crusoe@debian.org>
License: Expat

Files: src/bntseq.*
       src/bwtindex.cpp
       src/khash.h
       src/kseq.h
       src/ksort.h
       src/ksw.cpp
       src/kvec.h
       src/sais.h
       src/utils.*
Copyright: 2008 Genome Research Ltd (GRL).
           2008-2019 Heng Li <hli@jimmy.harvard.edu>
           2008, 2009, 2011 by Attractive Chaos <attractor@live.co.uk>
           2008-2010 Yuta Mori All Rights Reserved. (sais.hxx for sais-lite)
           2019 Vasimuddin Md <vasimuddin.md@intel.com>
           2019 Sanchit Misra <sanchit.misra@intel.com>
License: Expat

Files: src/bwt.h
Copyright: 2008 Genome Research Ltd (GRL).
           2008-2019 Heng Li <hli@jimmy.harvard.edu>
           2019 Vasimuddin Md <vasimuddin.md@intel.com>
           2019 Sanchit Misra <sanchit.misra@intel.com>
           2019 Intel Corporation
License: Expat
Comment: There is still reference to previous MIT licence

Files: src/kbtree.h
Copyright: © 1997-1999, 2001, John-Mark Gurney.
           © 2008-2009, Attractive Chaos <attractor@live.co.uk>
License: BSD-2-Clause

Files: debian/*
Copyright: 2019 Dylan Aïssi <daissi@debian.org>
           2020 Michael R. Crusoe <crusoe@debian.org>
License: GPL-3+
 This program is free software; you can redistribute it and/or modify it under
 the terms of the GNU General Public License as published by the Free Software
 Foundation, either version 3 of the License, or (at your option) any later
 version.
 .
 This program is distributed in the hope that it will be useful, but WITHOUT ANY
 WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
 PARTICULAR PURPOSE.  See the GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License along with
 this program.  If not, see <http://www.gnu.org/licenses/>.
 .
 On Debian systems, the complete text of the GNU General
 Public License can be found in `/usr/share/common-licenses/GPL-3'.

License: BSD-2-Clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 .
 1. Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 2. Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
 .
 THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND
 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 ARE DISCLAIMED.  IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE
 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
 OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
 OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
 SUCH DAMAGE.

License: Expat
 Permission is hereby granted, free of charge, to any person obtaining
 a copy of this software and associated documentation files (the
 "Software"), to deal in the Software without restriction, including
 without limitation the rights to use, copy, modify, merge, publish,
 distribute, sublicense, and/or sell copies of the Software, and to
 permit persons to whom the Software is furnished to do so, subject to
 the following conditions:
 .
 The above copyright notice and this permission notice shall be
 included in all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
 NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
 BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
 ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 SOFTWARE.
