
## METRICS CLASS	org.broadinstitute.dropseqrna.metrics.ReadQualityMetrics
aggregate	totalReads	mappedReads	hqMappedReads	hqMappedReadsNoPCRDupes
all	6370	6370	4893	4893
AACAATTAAGGC	16	16	13	13
AACAGGGACAGA	12	12	10	10
AGCAGGGACAGA	9	9	9	9
AGGAAAATTGAA	16	16	5	5
AGGCGAAGAGAT	18	18	16	16
AGGGAAAAATGA	6	6	5	5
AGGGAAAATAGA	1	1	1	1
AGGGAAAATTGA	1046	1046	857	857
AGGGAAAATTGC	4	4	4	4
AGGGAAATTGAC	1	1	1	1
AGGGAAATTGAG	1	1	0	0
AGGGACAATTGA	5	5	4	4
AGGGTAAATTGA	1	1	1	1
ATCAGAGACAGA	5	5	5	5
ATCAGGACAGAT	12	12	12	12
ATCAGGCACAGA	19	19	18	18
ATCAGGGAAAGA	2	2	2	2
ATCAGGGACAAA	1	1	0	0
ATCAGGGACAGA	1371	1371	1155	1155
ATCAGGGACAGC	4	4	4	4
ATCAGGGACAGG	14	14	14	14
ATCAGGGACAGT	23	23	23	23
ATCAGGGACTGA	15	15	14	14
ATCAGGGGCAGA	1	1	1	1
ATCTGGGACAGA	2	2	2	2
ATGCCTTACGCG	14	14	8	8
GTGCCTTACGCG	4	4	4	4
TAAAATTAAGGC	1	1	1	1
TAAATTAAGGCC	22	22	15	15
TACAAATAAGGC	9	9	7	7
TACAATAAAGGC	2	2	1	1
TACAATTAAAGC	1	1	1	1
TACAATTAAGGA	1	1	1	1
TACAATTAAGGC	1027	1027	792	792
TACAATTAGGCC	3	3	3	3
TACAATTATGGC	1	1	1	1
TACGATTAAGGC	1	1	1	1
TAGCCTTACGCG	1	1	1	1
TCGCCTTACGCG	2	2	1	1
TCGCGAAGAGAT	1	1	1	1
TGCAATTAAGGC	3	3	3	3
TGGCAAAGAGAT	3	3	1	1
TGGCCAAGAGAT	4	4	4	4
TGGCGAAGACAT	12	12	8	8
TGGCGAAGAGAA	1	1	1	1
TGGCGAAGAGAT	887	887	731	731
TGGCGAAGAGCT	2	2	0	0
TGGCGAAGATAT	1	1	1	1
TGGCGAGAGATG	38	38	26	26
TGGCGGAGAGAT	1	1	0	0
TGGTGAAGAGAT	1	1	1	1
TTACCTTACGCG	1	1	0	0
TTCAGGGACAGA	1	1	1	1
TTCCCTTACGCG	2	2	2	2
TTGACTTACGCG	1	1	1	1
TTGCCATACGCG	14	14	10	10
TTGCCTAACGCG	3	3	3	3
TTGCCTTACCCG	12	12	3	3
TTGCCTTACGAG	1	1	1	1
TTGCCTTACGCA	9	9	6	6
TTGCCTTACGCC	2	2	1	1
TTGCCTTACGCG	1672	1672	1071	1071
TTGCCTTACGTG	1	1	1	1
TTGCCTTCGCGT	3	3	3	3

## HISTOGRAM	java.lang.Integer
read quality	num reads
0	15
1	396
3	1066
255	4893

