#DGE	VERSION:1.1	EXPRESSION_FORMAT:raw
#LIBRARY	INPUT:/broad/mccarroll/dropseq/data/libraries/2015-10-27_P60ENTSTNRep1P1/GRCm38.81/alignment/P60ENTSTNRep1P1.bam	INPUT_DGE:/broad/mccarroll/dropseq/data/libraries/2015-10-27_P60ENTSTNRep1P1/GRCm38.81/std_analysis/numcells_auto/P60ENTSTNRep1P1.auto.digital_expression.txt.gz	REFERENCE:/broad/mccarroll/software/metadata/individual_reference/GRCm38/GRCm38.81/GRCm38.81.fasta	UEI:d35Ngn2plusGlia_Ngn2gliaD35B_E8_merged	PREFIX:TEST	OUTPUT_READS_INSTEAD:false	MIN_SUM_EXPRESSION:NULL	EDIT_DISTANCE:1	READ_MQ:10	MIN_BC_READ_THRESHOLD:0	MIN_NUM_READS_PER_CELL:NULL	MIN_NUM_GENES_PER_CELL:NULL	MIN_NUM_TRANSCRIPTS_PER_CELL:NULL	NUM_CORE_BARCODES:NULL	CELL_BC_FILE:/broad/mccarroll/dropseq/data/libraries/2015-10-27_P60ENTSTNRep1P1/GRCm38.81/std_analysis/numcells_auto/P60ENTSTNRep1P1.auto.selectedCellBarcodes.txt	USE_STRAND_INFO:true	RARE_UMI_FILTER_THRESHOLD:0.0
