GenomeTools - manual page for GT-CONVERTSEQ(1)

## NAME

gt-convertseq - Parse and convert sequence file formats (FASTA/FASTQ, GenBank, EMBL).

## SYNOPSIS

gt convertseq [options] file […]

## DESCRIPTION

-v [yes|no]

  be verbose (default: no)

-r [yes|no]

  reverse complement sequences (default: no)

-showfilelengthvalues [yes|no]

  show filelengths (default: no)

-noseq [yes|no]

  do not show sequences (default: no)

-fastawidth [value]

  FASTA output line width, 0 for unlimited (default: 60)

-contractdnawc [yes|no]

  replace stretches of DNA wildcards with a single N (default: no)

-contractproteinwc [yes|no]

  replace stretches of protein wildcards with a single X (default: no)

-o [filename]

  redirect output to specified file (default: undefined)

-gzip [yes|no]

  write gzip compressed output file (default: no)

-bzip2 [yes|no]

  write bzip2 compressed output file (default: no)

-force [yes|no]

  force writing to output file (default: no)

-help

  display help and exit

-version

  display version information and exit

## REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.