######
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTG
   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---TTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTG
######
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTG
    |||                                                                       | 
---NTTT-----------------------------------------------------------------------TN
######
----------------AACGG------------TGCGGGCACAGAAAAAA---------------------------
                |||||            || | | |   ||||||                           
TTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTG
######
AACGGTGCGGGCACAGAAAAAA
                      
----------------NTTTTN
