libvcflib (1.0.12+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Fix clean target.
  * Drop .gitignore files in debian directory.
  * Drop "Rules-Requires-Root: no" (default).
  * Drop "Priority: optional" (default).
  * Update standards-version.

 -- Santiago Vila <sanvila@debian.org>  Sun, 08 Feb 2026 10:40:00 +0100

libvcflib (1.0.12+dfsg-1) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * d/control: formally mark this package as 64-bit little-endian only.
    Closes: #1074044

  [ Étienne Mollier ]
  * d/watch: fix capture of pre-releases.
    Somehow, the scraping of Github tags page tended to meddle with the
    version capture, so this change introduces a switch to git mode, in
    addition to modifications to version mangling.
  * no_fsom patch: unfuzz.
  * shared_lib.patch: unfuzz.
  * tabix_linking.patch: unfuzz.
  * use_debian_packaged_fastahack.patch: refresh.
  * use_debian_packaged_libssw.patch: refresh.
  * use_debian_packaged_smithwaterman.patch: unfuzz.
  * wfa2_linking: unfuzz.
  * cmakelists-fixups.patch: new: fix a couple of configure issues.
  * d/libvcflib-tools.install: remove now missing vcfallelicprimitives.
  * d/libvcflib-dev.install: adjust to new target directory.

  [ Charles Plessy ]
  * Build-depend on discount instead of markdown
    Closes: #1073098

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.7.0 (routine-update)
  * Replace transitional package pkg-config by pkgconf in Build-Depends
    (routine-update)

 -- Andreas Tille <tille@debian.org>  Sun, 16 Feb 2025 14:54:48 +0100

libvcflib (1.0.9+dfsg1-3) unstable; urgency=medium

  * add support for loong64 arch
    Closes: #1057253

 -- Andreas Tille <tille@debian.org>  Sun, 03 Dec 2023 13:29:41 +0100

libvcflib (1.0.9+dfsg1-2) unstable; urgency=medium

  * Source-only upload.

 -- Andreas Tille <tille@debian.org>  Sun, 06 Aug 2023 23:01:54 +0200

libvcflib (1.0.9+dfsg1-1) unstable; urgency=medium

  * Bump SOVERSION due to ABI change
    Closes: #1032557
  * Attempt to use d-shlibs delayed for later once shared and static lib
    are created both
  * Drop unneeded header files with questionable licenses

 -- Andreas Tille <tille@debian.org>  Sun, 23 Jul 2023 10:42:25 +0200

libvcflib (1.0.9+dfsg-1) unstable; urgency=medium

  [ Étienne Mollier ]
  * New upstream version 1.0.9+dfsg
  * d/patches: refresh everything.
  * wfa2_linking: add patch; fix linker errors.

  [ Andreas Tille ]
  * libvcflib-dev: Depends: libwfa2-dev
    Closes: #1031473

 -- Andreas Tille <tille@debian.org>  Sun, 19 Feb 2023 13:54:18 +0100

libvcflib (1.0.7+dfsg-2) unstable; urgency=medium

  * Restrict architectures to 64bit only

 -- Andreas Tille <tille@debian.org>  Tue, 07 Feb 2023 21:10:50 +0100

libvcflib (1.0.7+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)
  * Do not support ZIG compiler which is not packaged yet
  * Build-Depends: python3-pybind11, libtabixpp-dev
  * Fix name of upstream download tarball in watch file
  * Versioned Build-Depends: libwfa2-dev (>= 2.3.2)
  * Do not exclude Files that are not in upstream tarball any more
  * New upstream version 1.0.6+dfsg

  [ Nilesh Patra ]
  * d/rules: Set WFA_GITMODULE to OFF
  * Refresh/update patches
  * Add some ext modules that are missed out in the tarball
  * Add rules for getting ext libs to contrib and adding clean rules for
    pruning them off for consecutive clean builds
  * Add build depends on libhts-dev and python3-dev
  * Pass more flags to get past the configure step
  * d/rules: Get tests running, do not install py shared object lib

 -- Andreas Tille <tille@debian.org>  Tue, 07 Feb 2023 18:37:40 +0100

libvcflib (1.0.3+dfsg-2) unstable; urgency=medium

  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 07 Oct 2022 16:26:06 +0200

libvcflib (1.0.3+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version

  [ Sascha Steinbiss ]
  * Team upload.
  * Fix manpage paths.

 -- Sascha Steinbiss <satta@debian.org>  Sun, 20 Feb 2022 19:24:58 +0100

libvcflib (1.0.2+dfsg-5) unstable; urgency=medium

  [ Vagrant Cascadian ]
  * Enable reproducible by avoid to embed the full path in RPATH
    Closes: #1003808

  [ Andreas Tille ]
  * Add missing build dependency on dh addon.

 -- Andreas Tille <tille@debian.org>  Mon, 17 Jan 2022 20:53:03 +0100

libvcflib (1.0.2+dfsg-4) unstable; urgency=medium

  * Install scripts
    Closes: #989014

 -- Andreas Tille <tille@debian.org>  Fri, 24 Dec 2021 10:51:57 +0100

libvcflib (1.0.2+dfsg-3) unstable; urgency=medium

  * Fix build with gcc-11
    Closes: #984139
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <tille@debian.org>  Wed, 20 Oct 2021 18:33:54 +0200

libvcflib (1.0.2+dfsg-2) unstable; urgency=medium

  * Team upload.
  * debian/rules: unit tests: Use DEB_HOST_GNU_TYPE instead of
    DEB_HOST_MULTIARCH for finding the build directory

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 28 Jan 2021 13:03:40 +0100

libvcflib (1.0.2+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Team upload.
  * Added binaries expected by bcbio to /usr/bin
  * d/rules - clean: Removing generated README.html

  [ Michael R. Crusoe ]
  * debian/copyright: Update Files-Excluded
  * Standards-Version: 4.5.1 (routine-update)
  * New upstream release
  * Switch to cmake, update patches

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 28 Jan 2021 11:16:19 +0100

libvcflib (1.0.1+dfsg-4) unstable; urgency=medium

  * Team upload.
  * debian/patches/use_debian_packaged_smithwaterman.patch: adjust
    inclusion of the packaged
    /usr/include/smithwaterman/SmithWatermanGotoh.h
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Update patch headers.
  * IntervalTree.h patch is no longer needed

 -- Michael R. Crusoe <crusoe@debian.org>  Sat, 31 Oct 2020 21:57:30 +0100

libvcflib (1.0.1+dfsg-3) unstable; urgency=medium

  * Team upload.
  * Improve the usage of these packages during cross-building

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 12 Feb 2020 13:00:17 +0100

libvcflib (1.0.1+dfsg-2) unstable; urgency=medium

  * Team upload.
  * -tools: add ${perl:Depends}
  * libvcflib{1,-dev}: add Multi-Arch: same
  * Standards-Version: 4.4.1

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 26 Dec 2019 15:54:27 +0100

libvcflib (1.0.1+dfsg-1) unstable; urgency=medium

  * New upstream release
  * Updated homepage URL
  * Major rewrite of patches

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 11 Dec 2019 13:11:23 +0100

libvcflib (1.0.0+dfsg-2) unstable; urgency=medium

  * Use 2to3 to port to Python3
    Closes: #936930
  * Use markdown instead of python-markdown

 -- Andreas Tille <tille@debian.org>  Fri, 06 Sep 2019 09:05:48 +0200

libvcflib (1.0.0+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version; patches refreshed
  * libvcflib-tools: promote vcffilter to /usr/bin; add basic autopkgtests
  * hardening fixed
  * update libvcflib.pc to reference upstream libraries
  * fixed spelling typos
  * updated debian/include/IntervalTree.h from https://github.com/ekg/intervaltree/blob/master/IntervalTree.h

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 04 Sep 2019 13:00:09 +0900

libvcflib (1.0.0~rc2+dfsg-4) unstable; urgency=medium

  * Move manpage to vcflib-tools package
    Closes: #933649

 -- Andreas Tille <tille@debian.org>  Thu, 01 Aug 2019 14:39:28 +0200

libvcflib (1.0.0~rc2+dfsg-3) unstable; urgency=medium

  * Move vcf2tsv and vcfkeepinfo to /usr/bin since it is needed by freebayes
    test
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/control
  * Override dh_dwz to do nothing

 -- Andreas Tille <tille@debian.org>  Wed, 31 Jul 2019 16:12:42 +0200

libvcflib (1.0.0~rc2+dfsg-2) unstable; urgency=medium

  * Add libfastahack to pkg-config input file
  * Depends: libfastahack-dev

 -- Andreas Tille <tille@debian.org>  Fri, 14 Sep 2018 13:56:52 +0200

libvcflib (1.0.0~rc2+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Created debian/upstream/metadata for references to
    registries.

  [ Andreas Tille ]
  * New upstream version
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Versioned Build-Depends:
       libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)
  * Fix header file name
  * Build-Depends: libbz2-dev
  * Fix installation target dir
  * Fix interpreter lines and add missing interpreter dependencies

 -- Andreas Tille <tille@debian.org>  Thu, 13 Sep 2018 22:34:23 +0200

libvcflib (1.0.0~rc1+dfsg1-6) unstable; urgency=medium

  * Test suite of freebayes 1.1.0 needs vcfuniq and vcfstreamsort in PATH
    so add according links
  * Standards-Version: 4.1.0

 -- Andreas Tille <tille@debian.org>  Mon, 04 Sep 2017 16:05:56 +0200

libvcflib (1.0.0~rc1+dfsg1-5) unstable; urgency=medium

  * Fix watch file

 -- Andreas Tille <tille@debian.org>  Sat, 17 Jun 2017 23:45:29 +0200

libvcflib (1.0.0~rc1+dfsg1-4) experimental; urgency=medium

  * Re-add pkg-config file for easier usage in freebayes which was reverted
    to meet freeze policy

 -- Andreas Tille <tille@debian.org>  Fri, 17 Mar 2017 13:29:20 +0100

libvcflib (1.0.0~rc1+dfsg1-3) unstable; urgency=medium

  * Fix location of binary tools
    Closes: #856424
  * Remove empty debian/upstream/metadata boilerplate

 -- Andreas Tille <tille@debian.org>  Wed, 01 Mar 2017 15:43:05 +0100

libvcflib (1.0.0~rc1+dfsg1-2) experimental; urgency=medium

  * Add pkg-config file for easier usage in freebayes

 -- Andreas Tille <tille@debian.org>  Fri, 10 Feb 2017 09:09:35 +0100

libvcflib (1.0.0~rc1+dfsg1-1) unstable; urgency=medium

  * Adapt to recent PIE changes in dpkg (Thanks for the patch to Adrian Bunk
    <bunk@stusta.de>)
    Closes: #844890
  * d/watch: version=4
  * debhelper 10
  * Remove code copy of libssw
    Closes: #838513
  * Add lintian overrides for false positive

 -- Andreas Tille <tille@debian.org>  Tue, 22 Nov 2016 13:13:12 +0100

libvcflib (1.0.0~rc1+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #838020)

 -- Andreas Tille <tille@debian.org>  Fri, 16 Sep 2016 15:52:29 +0200
