Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: mdanalysis
Upstream-Contact: O. Beckstein and team
Source: https://github.com/MDAnalysis/mdanalysis

Files: *
Copyright: 2005 Naveen Michaud-Agrawal,
           2006-2020 MDAnalysis Core Developer Team and contributers
License: GPL-2+

Files: CODE_OF_CONDUCT.md
Copyright: 2005 Naveen Michaud-Agrawal,
           2006-2020 MDAnalysis Core Developer Team and contributers
License: CCA-3

Files: package/doc/sphinx/source/documentation_pages/analysis/hole2.rst
Copyright: 2020 Lily Wang
License: GPL-3

Files: package/doc/sphinx/source/documentation_pages/analysis/encore.rst
Copyright: 2015-2017 Matteo Tiberti <matteo.tiberti@gmail.com>,
 Wouter Boomsma, Tone Bengtsen
License: GPL-3

Files: package/MDAnalysis/analysis/align.py
Copyright: 2010-2013 Oliver Beckstein, Joshua Adelman
License: GPL-3

Files: package/MDAnalysis/analysis/bat.py
Copyright: 2020 Soohaeng Yoo Willow and David Minh
License: GPL-2+

Files: package/MDAnalysis/analysis/density.py
Copyright: 2007-2011 Oliver Beckstein <orbeckst@gmail.com>
License: GPL-3+
Comment:
 based on code from Hop --- a framework to analyze solvation dynamics
 from MD simulations.
 .
 https://github.com/Becksteinlab/hop/blob/master/hop/density.py

Files: package/MDAnalysis/analysis/diffusionmap.py
Copyright: 2016 Eugen Hruska, John Detlefs
License: GPL-2

Files: package/MDAnalysis/analysis/dihedrals.py
Copyright: 2018 Henry Mull
License: GPL-2

Files: package/MDAnalysis/analysis/gnm.py
Copyright: 2011 Benjamin Hall <benjamin.a.hall@ucl.ac.uk>
License: GPL-2+

Files: package/MDAnalysis/analysis/helix_analysis.py
Copyright: 2020 Lily Wang
License: GPL-3

Files: package/MDAnalysis/analysis/msd.py
Copyright: 2020 Hugo MacDermott-Opeskin
License: GPL-2

Files: package/MDAnalysis/analysis/nuclinfo.py
Copyright: 2011 Elizabeth Denning
License: GPL-3

Files: package/MDAnalysis/analysis/pca.py
Copyright: 2016 John Detlefs
License: GPL-3

Files: package/MDAnalysis/analysis/polymer.py
Copyright: 2015, 2018 Richard J. Gowers
License: GPL-3

Files: package/MDAnalysis/analysis/psa.py
Copyright: 2015 Sean Seyler
License: GPL-3

Files: package/MDAnalysis/analysis/rms.py
Copyright: 2016 Oliver Beckstein, David L. Dotson, John Detlefs
License: GPL-2

Files: package/MDAnalysis/analysis/waterdynamics.py
Copyright: 2014-2015 Alejandro Bernardin
License: GPL-3

Files: package/MDAnalysis/analysis/hole2/*.py
Copyright: 2020 Lily Wang
License: GPL-3

Files: package/MDAnalysis/analysis/hbonds/hbond_autocorrel.py
Copyright: 2014 Richard J. Gowers
License: GPL-3

Files: package/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py
Copyright: 2014 Richard J. Gowers
License: GPL-3

Files: package/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py
Copyright: 2017-2018 Zhiyi Wu <zhiyi.wu@gtc.ox.ac.uk>
License: GPL-3

Files: package/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py
Copyright: 2019 Paul Smith
License: GPL-3

Files: package/MDAnalysis/analysis/legacy/x3dna.py
Copyright: 2013-2014 Elizabeth Denning
License: GPL-2

Files: package/MDAnalysis/lib/correlations.py
Copyright: 2020 Paul Smith & Mateusz Bieniek
License: GPL-2

Files: package/MDAnalysis/coordinates/memory.py
Copyright: 2016 Wouter Boomsma <wb@di.ku.dk>
License: GPL-2

Files: package/MDAnalysis/lib/formats/src/xdrfile.c
Copyright: 2009 Frans van Hoesel <f.h.j.van.hoesel@rug.nl>,
 2009-2014, Erik Lindahl <erik.lindahl@scilifelab.se>,
 2009-2014, David van der Spoel <david.vanderspoel@icm.uu.se>
License: BSD-2-clause

Files: package/MDAnalysis/lib/formats/libdcd.pyx
Copyright: 2006 Justin Gullingsrud,
           2006-2017 MDAnalysis Core Developer Team
License: GPL-2+

Files: package/MDAnalysis/transformations/*
Copyright: 2006 Christoph Gohlke <http://www.lfd.uci.edu/~gohlke/>
           2006-2017 MDAnalysis Core Developer Team
License: GPL-2+

Files: package/MDAnalysis/lib/qcprot.*
Copyright: 2005-2010 Douglas L. Theobald <dtheobald@brandeis.edu>,
           2009-2010 Pu Liu <pliu24@its.jnj.com>,
           2011      Joshua L. Adelman <jla65@pitt.edu>,
           2016       Robert R. Delgado, Cornell University
                      and Arizona State University
License: BSD-3-clause
Comment:
 If you use this QCP rotation calculation method in a publication, please
 reference:
 .
   Douglas L. Theobald (2005)
   "Rapid calculation of RMSD using a quaternion-based characteristic
   polynomial."
   Acta Crystallographica A 61(4):478-480.
 .
   Pu Liu, Dmitris K. Agrafiotis, and Douglas L. Theobald (2010)
   "Fast determination of the optimal rotational matrix for macromolecular
   superpositions."
   J. Comput. Chem. 31, 1561-1563.
 .
 A full description of the method, along with the original C
 implementation can be found at http://theobald.brandeis.edu/qcp/
 .
 Python Port by Joshua L. Adelman

Files: package/MDAnalysis/visualization/streamlines*.py
Copyright: 2014 Tyler Reddy and Matthieu Chavent
License: GPL-3

Files: debian/*
Copyright: 2020 Drew Parsons <dparsons@debian.org>
License: GPL-2+

License: GPL-2
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; version 2 of the License.
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 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
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 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
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 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".

License: GPL-2+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
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 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
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 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2",
 or version 3 in "/usr/share/common-licenses/GPL-3",

License: GPL-3
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; version 3 of the License.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

License: GPL-3+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

License: BSD-2-clause
 All rights reserved.
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 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
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License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
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 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
 INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
 BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
 OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
 AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY
 WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
 POSSIBILITY OF SUCH DAMAGE.

License: CCA-3
 Creative Commons Attribution 3.0 Unported (CC BY 3.0)
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 This is a human-readable summary of (and not a substitute for) the
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