Release Note

v3.2.6 (Nov 25 2015)
  1. Add invertebrate mt, Echinoderm and Euplotid codes [lset code=invermt].
  2. Fix a bug of updating brls in tree-stretch move.
  3. Correct the proposal ratio in the add/delete branch move.
  4. Add more coding options for restriction site chars.

v3.2.5 (Apr 8 2015)
  1. Fix pdf in the coalescent prior.
  2. Fix a few issues when appending to the previous run.
  3. Improve the efficiency of moving ancestral fossils.
  4. Add lognormal rate variation among sites [lset rate=lnorm].
  5. Add parsimony-biased SPR and TBR proposals (for developers).
  6. Other minor bug fixes and improvements.

v3.2.4 (Jan 27 2015)
  1. Correct the proposal ratio in the node slider move for non-clock tree.
  2. Fix reporting ancestral states under GTR+I+G model.
  3. Fix the sliding window in the move of updating omega in codon model.
  4. Fix the likelihood and proposal ratio of NaN in the multi-species coalescent analysis.
  5. Correct screen output messages for a few commands.
  6. Fix the interaction of MrBayes with Beagle for the Windows executable. 
  7. Fix prior pdf of relative rates (rate multipliers).

v3.2.3 (Oct 22 2014)
  1. Correct the proposal ratio in the extending TBR move for non-clock tree.
  2. Fix numerical error of calculating proposal ratio in parsimony-biased SPR moves.
  3. Set unconstrained:gammadir prior as default to help avoid overestimating branch lengths.
  4. Add clock:fossilization prior for total-evidence dating analysis.
  5. Add LG model to Aamodelpr [prset aamodelpr=fixed(LG)].
  6. Rearrange the code to be more concise.
  7. Other minor bug fixes and improvements.

v3.2.2 (Aug 22 2013)
  1. Disable LIKE_EPSILON warning for standard users.
  2. Fix segmentation fault errors in 64bit version.
  3. Fix some issues when dealing with constraints.
  4. Fix setting aarevmatpr parameters to fixed for GTR.
  5. Other bug fixes and improvements.

v3.2.1 (Feb 8 2012)
v3.2.0 (Nov 16 2011)
  Major release.

For a full list of bug fixes, see https://sourceforge.net/p/mrbayes/bugs/milestone/v3.2.x/
