---
Name: SnpEff
URL: http://snpeff.sourceforge.net/
Description: >
  SnpEff is a genetic variant annotation and effect prediction toolbox.
  It annotates and predicts the effects of variants on genes (such as amino
  acid changes).
---

The SnpEff module parses results generated by
[SnpEff](http://snpeff.sourceforge.net/),
a genetic variant annotation and effect prediction toolbox.
It annotates and predicts the effects of variants on genes (such as amino
acid changes).

MultiQC parses the summary `.csv` file that is generated by SnpEff. Note that
you must run SnpEff with `-csvStats <filename>` for this to be generated.
See the [SnpEff](http://snpeff.sourceforge.net/SnpEff_manual.html#outputSummary)
documentation for more information.
