---
Name: Disambiguate
URL: https://github.com/AstraZeneca-NGS/disambiguate
Description: >
  Disambiguation algorithm for reads aligned to two species (e.g. human and
  mouse genomes) from Tophat, Hisat2, STAR or BWA mem.
---

Disambiguation algorithm for reads aligned to two species (e.g. human and mouse
genomes) from Tophat, Hisat2, STAR or BWA mem. Both a Python and C++
implementation are offered.

The MultiQC module for Disambiguate parses the summary files generated by
Disambiguate.
