---
Name: bcl2fastq
URL: https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html
Description: >
  bcl2fastq can be used to both demultiplex data and convert BCL files to
  FASTQ file formats for downstream analysis.
---

There are two versions of this software: bcl2fastq for MiSeq and HiSeq
sequencing systems running RTA versions earlier than 1.8, and bcl2fastq2 for
Illumina sequencing systems running RTA version 1.18.54 and above. This module
currently only covers output from the latter.
