NCBI Structure Group Research
Description: Summary of research activities for the NCBI Structure Group
Keywords: NCBI Structure Cn3D VAST Threading MMDB PKB CN3D cn3d

CASP3 1998 Structure prediction experiment CASP2 1996 Structure prediction experiment Threading Protein Fold Recognition |  |
Structure Group Research
Senior Investigator: Stephen H. Bryant Affiliation: Computational Biology Branch, National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM). Contact: Dr. S. H. Bryant, Bldg. 38A, Room 5S504, NLM, NIH, 8600 Rockville Pike, Bethesda, MD 20894. Tel: (301) 435-7792 Fax: (301) 480-9241 email bryant@ncbi.nlm.nih.gov
Comparative macromolecular 3D-structure analysis Cn3D: Visualization of 3D structures and alignments MMDB: "Computer-friendly" structure database Threading: Algorithms for protein fold recognition VAST: Protein structure-structure comparisons CDD: A Conserved Domain Database Entrez3D: WWW-retrieval tools for all of the above
Selected Online Publications: Wang Y, Anderson JB, Chen J, Geer LY, He S, Hurwitz DI, Liebert CA, Madej T, Marchler GH, Marchler-Bauer A, Panchenko AR, Shoemaker BA, Song JS, Thiessen PA, Yamashita RA, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res 2002; 30:249-252. Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res 2002; 30:281-283. Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH. MMDB: 3D structure data in Entrez. Nucleic Acids Res 2000; 28:243-245. Panchenko A, Marchler-Bauer A, Bryant SH. Threading with Explicit Models for Evolutionary Conservation of Structure and Sequence. Proteins Suppl 1999; 3:133-140. Marchler-Bauer A, Addess KJ, Chappey C, Geer L, Madej T, Matsuo Y, Wang Y, Bryant SH. MMDB: Entrez's 3D structure database. Nucleic Acids Res 1999; 27:240-243. Hogue CWV. Cn3D: a new generation of three-dimensional molecular structure viewer. Trends Biochem Sci 1997; 22:314-316. Marchler-Bauer A, Bryant SH. A measure of success in fold recognition. Trends Biochem Sci 1997; 22:236-240. Hogue CWV, Ohkawa H, Bryant SH. A dynamic look at structures: WWW-Entrez and the molecular modeling database. Trends Biochem. Sci 1996; 21:226-229. |  |
see also:
1995: Successful Leptin structure prediction
Personnel (Click on link to send E-mail): Tom Madej Aron Marchler-Bauer Yanli Wang Anna Panchenko Lewis Geer Jie Chen Paul Thiessen David Hurwitz Ben Shoemaker Siqian He Natasha Sefcovic John Anderson Roxanne Yamashita Cynthia Liebert James Song Gabriele Marchler Maricel Kann Hsin-Yi Tsang Carol DeWeese-Scott Christopher Lanczycki John Jackson Chunlei Liu Jodie Yin Vahan Simonyan Kenneth Evan Thompson Ming Xu Praveen Cherukuri Evan Bolton Wolf-Dietrich Ihlenfeldt Jeff Zhang Jane He Shennan Lu Jewen Xiao Dachuan Zhang Marc Gwadz Mikhail Mullokandov Fu Lu Saikat Chakrabarti Zhaoxi Ke Luning Hao Myra Derbyshire Abby Ngau Noreen Gonzales Structure Group Alumni (addresses): Francois Major Jean-Francois Gibrat Hitomi Ohkawa Christopher Hogue Qiuwei Xu Yo Matsuo Wei Ding Ken Addess Naomi Ariel Diane Zimmerman Anastasia Nikolskaya Raja Mazumder Natalie Fedorova Aviva Jacobs Sona Vasudevan B. Sridhar Rao
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