salmon (1.10.3+ds1-3) unstable; urgency=medium

  * Team upload.
  * Remove all instances of boost_system to make sure the package builds
    with libboost 1.90
    Closes: 1127277

 -- Andreas Tille <tille@debian.org>  Tue, 24 Feb 2026 16:10:27 +0100

salmon (1.10.3+ds1-2) unstable; urgency=medium

  * Team upload.
  * d/watch: Fix field names
  * Drop Kevin Murray from Uploaders (Thank you Kevin for your work on this
    package)
  * Remove libboost-system-dev from Build-Depends
    Closes: #1127277
  * Standards-Version: 4.7.3 (routine-update)
  * debputy lint --auto-fix (routine-update)
  * d/copyright: Review

 -- Andreas Tille <tille@debian.org>  Sun, 22 Feb 2026 10:50:09 +0100

salmon (1.10.3+ds1-1) unstable; urgency=medium

  * Team upload.

  [ Santiago Vila ]
  * Fix FTBFS when using the nocheck build profile. Closes: #1103327.

  [ Yavor Doganov ]
  * New upstream release.
  * debian/control (Build-Depends): Add libparallel-hashmap-dev and stop
    using the bundled copy (Closes: #1088027).  Remove libspdlog-dev to
    avoid confusion; the package uses bundled ancient versions of spdlog
    and fmtlib so it needs porting.  Replace pkg-config with pkgconf.
    (Rules-Requires-Root): Remove; redundant.
    (Standards-Version): Claim compliance with 4.7.2; no changes needed.
  * debian/rules: Enable all hardening.
  * debian/external/pufferfish/include/libdivide/libdivide.h: Fix FTBFS
    with GCC 15 (Closes: #1097838).
  * debian/external/pufferfish/CMakeLists.txt: Remove useless CMake
    message which confuses blhc.
  * debian/patches/blhc.patch: Likewise.
  * debian/watch: Switch to version 5.
  * debian/copyright (Files-Excluded): Add include/parallel_hashmap.

 -- Yavor Doganov <yavor@gnu.org>  Wed, 12 Nov 2025 06:25:26 +0200

salmon (1.10.2+ds1-1) unstable; urgency=medium

  * New upstream version
    Closes: #1043107
  * Standards-Version: 4.6.2 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 16 Aug 2023 13:09:23 +0200

salmon (1.10.1+ds1-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
    Closes: #1028713, #1031580
  * Refresh external files from pufferfish
  * Add autopkgtest

 -- Andreas Tille <tille@debian.org>  Mon, 13 Mar 2023 09:15:13 +0100

salmon (1.9.0+ds1-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Team upload.
  * New upstream version  (Closes: #1008254)

  [ Étienne Mollier ]
  * Standards-Version: 4.6.1 (routine-update)
  * Refresh use_debian_packaged_libs.patch, disable-version-check.patch and
    spelling patch.
  * d/external/: bump pufferfish version to support onetbb.  (Closes: #1011662)
  * d/external/: update twopaco to fix ftbfs with onetbb.
  * d/external/install/: update to reflect changes in embedded pufferfish.
  * Unvendor embedded cereal in embedded pufferfish.  (Closes: #1008252)
  * verbose-test.patch: make test failures more verbose.
  * d/salsa-ci.yml: disable run on i386

 -- Étienne Mollier <emollier@debian.org>  Sat, 05 Nov 2022 20:45:44 +0100

salmon (1.6.0+ds1-1) unstable; urgency=medium

  * Team upload.
  * New upstream version

 -- Steffen Moeller <moeller@debian.org>  Mon, 13 Dec 2021 15:41:10 +0100

salmon (1.5.2+ds1-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * Team upload.
  * Fix watchfile to detect new versions on github (routine-update)
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * d/u/metadata: Added ref to SciCrunch (SCR_017036)

  [ Andreas Tille ]
  * Build-Depends: python3-docs-theme and use this instead of furo

 -- Andreas Tille <tille@debian.org>  Mon, 11 Oct 2021 09:38:42 +0200

salmon (1.4.0+ds1-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.5.1 (routine-update)
  * debian/patches/portable_pause: remove, applied upstream
  * debian/patches/spelling: remove, applied upstream
  * debian/patches/include_fix: remove, applied upstream
  * Refreshed remaining patches
  * debian/control: build-dep on libsimde-dev, build for arm64
  * debian/patches/spelling: new typo fixes

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 26 Nov 2020 19:10:46 +0100

salmon (1.3.0+ds1-3) unstable; urgency=medium

  * Team upload.
  * Architecture: any-amd64
    Closes: #966430

 -- Andreas Tille <tille@debian.org>  Fri, 14 Aug 2020 12:44:39 +0200

salmon (1.3.0+ds1-2) unstable; urgency=medium

  * Fix the build by adding a missing include.

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 28 Jul 2020 14:50:48 +0200

salmon (1.3.0+ds1-1) unstable; urgency=medium

  * Add a patch for portable pausing in spinlocks.
  * debian/upstream/metadata: link to upstream's repository
  * New upstream version
  * debhelper-compat 13 (routine-update)
  * kseq patch no longer needed
  * Refreshed remaining patches

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 16 Jul 2020 13:54:17 +0200

salmon (1.2.1+ds1-1) unstable; urgency=medium

  * New upstream version (Closes: #952102)
  * debhelper-compat 12
  * Standards-Version: 4.5.0 (routine-update)
  * Secure URI in copyright format (routine-update)
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
    update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit.
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 23 Apr 2020 12:13:04 +0200

salmon (0.12.0+ds1-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
    Closes: #909767
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Remove debian/gbp.conf
  * Build-Depends: libbz2-dev, liblzma-dev
  * Use python3-sphinx exclusively
  * Do not parse d/changelog

 -- Andreas Tille <tille@debian.org>  Thu, 13 Dec 2018 18:21:38 +0100

salmon (0.8.0+ds1-1) unstable; urgency=medium

  * Team upload
  * New upstream version
  * debhelper 10
  * d/watch: version=4
  * Update embedded rapmap.

  TODO: Does not build:
  error: no matching function for call to 'create(const char [11], <brace-enclosed initializer list>)'

 -- Andreas Tille <tille@debian.org>  Tue, 24 Jan 2017 14:08:13 +0100

salmon (0.7.2+ds1-2) unstable; urgency=medium

  * Team upload.
  * Fix FTBFS by fixing parallel test runs.
  * Work towards reproducibility by making sure CXXFLAGS are honored.
    Due to __FILE__ related build path embedding still not reproducible.

 -- Sascha Steinbiss <satta@debian.org>  Sun, 11 Sep 2016 13:29:19 +0000

salmon (0.7.2+ds1-1) unstable; urgency=medium

  * Team upload
  * New upstream version
  * Make sure build uses Debian's packaged version of dependencies
    (exception: RapMap, see below).
  * d/watch: use xz compression
  * Include necessary parts of RapMap code until upstream sorts out
    code embedding.
  * Adapt spdlog API use to match version of spdlog packaged in Debian.
    Closes: #835720
  * Bump Standards-Version.
  * Drop obsolete override.
  * Enable bindnow flags.

 -- Andreas Tille <tille@debian.org>  Tue, 30 Aug 2016 09:10:48 +0200

salmon (0.4.2+ds1-3) unstable; urgency=medium

  [ Sascha Steinbiss ]
  * Team upload.
  * Re-introduce bitmask for MEM_F_SELF_OVLP dropped by libbwa upstream.
    Closes: #818397

  [ Andreas Tille ]
  * Drop note that we can not set better hardening

 -- Sascha Steinbiss <sascha@steinbiss.name>  Tue, 05 Apr 2016 21:20:56 +0000

salmon (0.4.2+ds1-2) unstable; urgency=medium

  * Make build reproducible.
    Closes: #813994

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Sun, 07 Feb 2016 03:58:27 -0800

salmon (0.4.2+ds1-1) unstable; urgency=low

  * Initial release (Closes: #800339)

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Fri, 18 Sep 2015 18:40:38 -0700
