// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0

#include <vector>

#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/core/debug_stream.hpp>
#include <seqan3/search/fm_index/bi_fm_index.hpp>

int main()
{
    using namespace seqan3::literals;

    seqan3::debug_stream << "Example to_fwd_cursor()\n";

    seqan3::dna4_vector genome{"GAATTAACGAAC"_dna4};
    seqan3::bi_fm_index index{genome}; // build the bidirectional index

    auto cur = index.cursor();                                 // create a cursor
    cur.extend_left("AAC"_dna4);                               // search the sequence "AAC"
    seqan3::debug_stream << cur.path_label(genome) << '\n';    // outputs "AAC"
    auto uni_it = cur.to_fwd_cursor();                         // unidirectional cursor on the text "GAATTAACGAAC"
    seqan3::debug_stream << uni_it.path_label(genome) << '\n'; // outputs "AAC"
    // Undefined behaviour! Cannot be called on the forward cursor if the last extension on the bidirectional
    // cursor was to the left:
    // cur.cycle_back();
    // seqan3::debug_stream << cur.last_rank() << '\n';

    uni_it.extend_right('G'_dna4);                             // search the sequence "AACG"
    seqan3::debug_stream << uni_it.path_label(genome) << '\n'; // outputs "AACG"
    seqan3::debug_stream << uni_it.last_rank() << '\n';        // outputs 2
    uni_it.cycle_back(); // returns false since there is no sequence "AACT" in the text.
}
