Date: 2015-09-03T15:04:16+00:00

Actual source code: test11.c
slepc-3.6.1 2015-09-03
Report Typos and Errors

      1: /*
      2:    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
      3:    SLEPc - Scalable Library for Eigenvalue Problem Computations
      4:    Copyright (c) 2002-2015, Universitat Politecnica de Valencia, Spain

      6:    This file is part of SLEPc.

      8:    SLEPc is free software: you can redistribute it and/or modify it under  the
      9:    terms of version 3 of the GNU Lesser General Public License as published by
     10:    the Free Software Foundation.

     12:    SLEPc  is  distributed in the hope that it will be useful, but WITHOUT  ANY
     13:    WARRANTY;  without even the implied warranty of MERCHANTABILITY or  FITNESS
     14:    FOR  A  PARTICULAR PURPOSE. See the GNU Lesser General Public  License  for
     15:    more details.

     17:    You  should have received a copy of the GNU Lesser General  Public  License
     18:    along with SLEPc. If not, see <http://www.gnu.org/licenses/>.
     19:    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
     20: */

     22: static char help[] = "Test BV block orthogonalization.\n\n";

     24: #include <slepcbv.h>

     28: int main(int argc,char **argv)
     29: {
     30:   PetscErrorCode    ierr;
     31:   BV                X,Y,Z,cached;
     32:   Mat               B,M;
     33:   Vec               v,t;
     34:   PetscInt          i,j,n=20,l=2,k=8,Istart,Iend;
     35:   PetscViewer       view;
     36:   PetscBool         verbose;
     37:   PetscReal         norm;
     38:   PetscScalar       alpha;
     39:   BVOrthogBlockType btype;

     41:   SlepcInitialize(&argc,&argv,(char*)0,help);
     42:   PetscOptionsGetInt(NULL,"-n",&n,NULL);
     43:   PetscOptionsGetInt(NULL,"-l",&l,NULL);
     44:   PetscOptionsGetInt(NULL,"-k",&k,NULL);
     45:   PetscOptionsHasName(NULL,"-verbose",&verbose);
     46:   PetscPrintf(PETSC_COMM_WORLD,"Test BV block orthogonalization (length %D, l=%D, k=%D).\n",n,l,k);

     48:   /* Create template vector */
     49:   VecCreate(PETSC_COMM_WORLD,&t);
     50:   VecSetSizes(t,PETSC_DECIDE,n);
     51:   VecSetFromOptions(t);

     53:   /* Create BV object X */
     54:   BVCreate(PETSC_COMM_WORLD,&X);
     55:   PetscObjectSetName((PetscObject)X,"X");
     56:   BVSetSizesFromVec(X,t,k);
     57:   BVSetFromOptions(X);
     58:   BVGetOrthogonalization(X,NULL,NULL,NULL,&btype);

     60:   /* Set up viewer */
     61:   PetscViewerASCIIGetStdout(PETSC_COMM_WORLD,&view);
     62:   if (verbose) {
     63:     PetscViewerPushFormat(view,PETSC_VIEWER_ASCII_MATLAB);
     64:   }

     66:   /* Fill X entries */
     67:   for (j=0;j<k;j++) {
     68:     BVGetColumn(X,j,&v);
     69:     VecSet(v,0.0);
     70:     for (i=0;i<=n/2;i++) {
     71:       if (i+j<n) {
     72:         alpha = (3.0*i+j-2)/(2*(i+j+1));
     73:         VecSetValue(v,i+j,alpha,INSERT_VALUES);
     74:       }
     75:     }
     76:     VecAssemblyBegin(v);
     77:     VecAssemblyEnd(v);
     78:     BVRestoreColumn(X,j,&v);
     79:   }
     80:   if (btype==BV_ORTHOG_BLOCK_GS) {  /* GS requires the leading columns to be orthogonal */
     81:     for (j=0;j<l;j++) {
     82:       BVOrthogonalizeColumn(X,j,NULL,&norm,NULL);
     83:       alpha = 1.0/norm;
     84:       BVScaleColumn(X,j,alpha);
     85:     }
     86:   }
     87:   if (verbose) {
     88:     BVView(X,view);
     89:   }

     91:   /* Create copy on Y */
     92:   BVDuplicate(X,&Y);
     93:   PetscObjectSetName((PetscObject)Y,"Y");
     94:   BVCopy(X,Y);
     95:   BVSetActiveColumns(Y,l,k);
     96:   BVSetActiveColumns(X,l,k);

     98:   /* Test BVOrthogonalize */
     99:   BVOrthogonalize(Y,NULL);
    100:   if (verbose) {
    101:     BVView(Y,view);
    102:   }

    104:   /* Check orthogonality */
    105:   MatCreateSeqDense(PETSC_COMM_SELF,k,k,NULL,&M);
    106:   MatShift(M,1.0);   /* set leading part to identity */
    107:   BVDot(Y,Y,M);
    108:   MatShift(M,-1.0);
    109:   MatNorm(M,NORM_1,&norm);
    110:   if (norm<100*PETSC_MACHINE_EPSILON) {
    111:     PetscPrintf(PETSC_COMM_WORLD,"Level of orthogonality < 100*eps\n");
    112:   } else {
    113:     PetscPrintf(PETSC_COMM_WORLD,"Level of orthogonality: %g\n",(double)norm);
    114:   }

    116:   /* Create inner product matrix */
    117:   MatCreate(PETSC_COMM_WORLD,&B);
    118:   MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,n,n);
    119:   MatSetFromOptions(B);
    120:   MatSetUp(B);
    121:   PetscObjectSetName((PetscObject)B,"B");

    123:   MatGetOwnershipRange(B,&Istart,&Iend);
    124:   for (i=Istart;i<Iend;i++) {
    125:     if (i>0) { MatSetValue(B,i,i-1,-1.0,INSERT_VALUES); }
    126:     if (i<n-1) { MatSetValue(B,i,i+1,-1.0,INSERT_VALUES); }
    127:     MatSetValue(B,i,i,2.0,INSERT_VALUES);
    128:   }
    129:   MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);
    130:   MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);

    132:   /* Prepare to repeat test, now with a non-standard inner product */
    133:   BVCopy(X,Y);
    134:   BVDuplicate(X,&Z);
    135:   PetscObjectSetName((PetscObject)Z,"Z");
    136:   BVSetActiveColumns(Z,l,k);
    137:   BVSetMatrix(X,B,PETSC_FALSE);
    138:   BVSetMatrix(Y,B,PETSC_FALSE);
    139:   if (btype==BV_ORTHOG_BLOCK_GS) {  /* GS requires the leading columns to be orthogonal */
    140:     for (j=0;j<l;j++) {
    141:       BVOrthogonalizeColumn(Y,j,NULL,&norm,NULL);
    142:       alpha = 1.0/norm;
    143:       BVScaleColumn(Y,j,alpha);
    144:     }
    145:   }
    146:   if (verbose) {
    147:     BVView(X,view);
    148:   }

    150:   /* Test BVOrthogonalize */
    151:   BVOrthogonalize(Y,NULL);
    152:   if (verbose) {
    153:     BVView(Y,view);
    154:   }

    156:   /* Extract cached BV and check it is equal to B*X */
    157:   BVGetCachedBV(Y,&cached);
    158:   BVMatMult(X,B,Z);
    159:   BVAXPY(Z,-1.0,cached);
    160:   BVNorm(Z,NORM_FROBENIUS,&norm);
    161:   if (norm<100*PETSC_MACHINE_EPSILON) {
    162:     PetscPrintf(PETSC_COMM_WORLD,"Residual ||cached-BX|| < 100*eps\n");
    163:   } else {
    164:     PetscPrintf(PETSC_COMM_WORLD,"Residual ||cached-BX||: %g\n",(double)norm);
    165:   }

    167:   /* Check orthogonality */
    168:   MatZeroEntries(M);
    169:   MatShift(M,1.0);   /* set leading part to identity */
    170:   BVDot(Y,Y,M);
    171:   MatShift(M,-1.0);
    172:   MatNorm(M,NORM_1,&norm);
    173:   if (norm<100*PETSC_MACHINE_EPSILON) {
    174:     PetscPrintf(PETSC_COMM_WORLD,"Level of orthogonality < 100*eps\n");
    175:   } else {
    176:     PetscPrintf(PETSC_COMM_WORLD,"Level of orthogonality: %g\n",(double)norm);
    177:   }

    179:   MatDestroy(&M);
    180:   MatDestroy(&B);
    181:   BVDestroy(&X);
    182:   BVDestroy(&Y);
    183:   BVDestroy(&Z);
    184:   VecDestroy(&t);
    185:   SlepcFinalize();
    186:   return 0;
    187: }