# SnpEff: Translocation report

### Summary

SnpEff version |
    ${version}
Date & Time | ${date}
Command line arguments |
    ${args}
Number of translocations | ${countTranslocations}

### Index

Effect | Genes | Transcripts | Coordiantes
--- | --- | --- | ---
<#list translocations as transloc>
${transloc.variantEffect} | ${transloc.geneName1} - ${transloc.geneName2} | ${transloc.trId1} - ${transloc.trId2} | ${transloc.chr1}:${transloc.pos1OneBased} - ${transloc.chr2}:${transloc.pos2OneBased}

### Details

<#list translocations as transloc>

### ${transloc.index}

| BND Endpoint 1 | BND Endpoint 2
--- | --- | ---
Genes | ${transloc.geneName1} | ${transloc.geneName2}
Transcript IDs | ${transloc.trId1} | ${transloc.trId2}
Genomic coordinates | ${transloc.chr1} : ${transloc.pos1OneBased} | ${transloc.chr2} : ${transloc.pos2OneBased}
Putative effect | ${transloc.variantEffect}
Putative impact | ${transloc.impact}
HGVS.p | ${transloc.hgvsP}
HGVS.c | ${transloc.hgvsC}

Vcf annotation entry (raw data)

     ${transloc.vcfEffect}

${transloc.svgPlot}