##SnpEffVersion="3.5 (build 2014-04-07), by Pablo Cingolani"
##SnpEffCmd="SnpEff  testHg19Chr1 luca.chr1.vcf "
##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact | Functional_Class | Codon_Change | Amino_Acid_Change| Amino_Acid_length | Gene_Name | Transcript_BioType | Gene_Coding | Transcript_ID | Exon_Rank  | Genotype_Number [ | ERRORS | WARNINGS ] )' ">
chr1	11168296	.	C	G	0.0	PASS	AC=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Cag|E2526Q|2549|MTOR||CODING|NM_004958.3|57|1)
chr1	11168296	.	C	G	0.0	PASS	AC=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Cag|E2526Q|2549|MTOR||CODING|NM_004958.3|57|1)
chr1	11168304	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aAg|T2523K|2549|MTOR||CODING|NM_004958.3|57|1)
chr1	11168304	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aAg|T2523K|2549|MTOR||CODING|NM_004958.3|57|1)
chr1	11168310	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gCt|V2521A|2549|MTOR||CODING|NM_004958.3|57|1)
chr1	11168310	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gCt|V2521A|2549|MTOR||CODING|NM_004958.3|57|1)
chr1	11169706	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Ttt|I2483F|2549|MTOR||CODING|NM_004958.3|55|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|55|1)
chr1	11169706	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Ttt|I2483F|2549|MTOR||CODING|NM_004958.3|55|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|55|1)
chr1	11174447	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cac/Aac|H2410N|2549|MTOR||CODING|NM_004958.3|53|1)
chr1	11174447	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cac/Aac|H2410N|2549|MTOR||CODING|NM_004958.3|53|1)
chr1	11175482	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctg/Atg|L2354M|2549|MTOR||CODING|NM_004958.3|51|1)
chr1	11175482	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctg/Atg|L2354M|2549|MTOR||CODING|NM_004958.3|51|1)
chr1	11177112	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGt/cAt|R2322H|2549|MTOR||CODING|NM_004958.3|50|1)
chr1	11177112	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGt/cAt|R2322H|2549|MTOR||CODING|NM_004958.3|50|1)
chr1	11181305	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E2311K|2549|MTOR||CODING|NM_004958.3|49|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181305	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gag/Aag|E2311K|2549|MTOR||CODING|NM_004958.3|49|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181317	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Ggc|S2307G|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181317	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Ggc|S2307G|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181357	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaA|N2293K|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181357	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaA|N2293K|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181360	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaA|N2292K|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181360	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaA|N2292K|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181422	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Act|A2272T|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11181422	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Act|A2272T|2549|MTOR||CODING|NM_004958.3|49|1)
chr1	11182037	.	C	T	0.0	PASS	AC=4;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGg/cAg|R2270Q|2549|MTOR||CODING|NM_004958.3|48|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|48|1)
chr1	11182037	.	C	T	0.0	PASS	AC=4;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGg/cAg|R2270Q|2549|MTOR||CODING|NM_004958.3|48|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|48|1)
chr1	11184574	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tct/Cct|S2215P|2549|MTOR||CODING|NM_004958.3|47|1)
chr1	11184574	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tct/Cct|S2215P|2549|MTOR||CODING|NM_004958.3|47|1)
chr1	11184591	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTg/cAg|L2209Q|2549|MTOR||CODING|NM_004958.3|47|1)
chr1	11184591	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTg/cAg|L2209Q|2549|MTOR||CODING|NM_004958.3|47|1)
chr1	11184663	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTt/cAt|L2185H|2549|MTOR||CODING|NM_004958.3|47|1)
chr1	11184663	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTt/cAt|L2185H|2549|MTOR||CODING|NM_004958.3|47|1)
chr1	11186831	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAt/tTt|Y2125F|2549|MTOR||CODING|NM_004958.3|46|1)
chr1	11186831	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAt/tTt|Y2125F|2549|MTOR||CODING|NM_004958.3|46|1)
chr1	11187784	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAc/tTc|Y2038F|2549|MTOR||CODING|NM_004958.3|44|1)
chr1	11187784	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAc/tTc|Y2038F|2549|MTOR||CODING|NM_004958.3|44|1)
chr1	11188547	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caC/caA|H1958Q|2549|MTOR||CODING|NM_004958.3|42|1)
chr1	11188547	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caC/caA|H1958Q|2549|MTOR||CODING|NM_004958.3|42|1)
chr1	11188551	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTt/aCt|I1957T|2549|MTOR||CODING|NM_004958.3|42|1)
chr1	11188551	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTt/aCt|I1957T|2549|MTOR||CODING|NM_004958.3|42|1)
chr1	11188585	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Gtt|I1946V|2549|MTOR||CODING|NM_004958.3|42|1)
chr1	11188585	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Att/Gtt|I1946V|2549|MTOR||CODING|NM_004958.3|42|1)
chr1	11188913	.	T	C	0.0	PASS	AC=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cGg|Q1937R|2549|MTOR||CODING|NM_004958.3|41|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|41|1)
chr1	11188913	.	T	C	0.0	PASS	AC=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cGg|Q1937R|2549|MTOR||CODING|NM_004958.3|41|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|41|1)
chr1	11189799	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctc/Atc|L1904I|2549|MTOR||CODING|NM_004958.3|40|1)
chr1	11189799	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctc/Atc|L1904I|2549|MTOR||CODING|NM_004958.3|40|1)
chr1	11189801	.	G	T	0.0	PASS	AC=3;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCa/aAa|T1903K|2549|MTOR||CODING|NM_004958.3|40|1)
chr1	11189801	.	G	T	0.0	PASS	AC=3;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCa/aAa|T1903K|2549|MTOR||CODING|NM_004958.3|40|1)
chr1	11189805	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gat/Aat|D1902N|2549|MTOR||CODING|NM_004958.3|40|1)
chr1	11189805	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gat/Aat|D1902N|2549|MTOR||CODING|NM_004958.3|40|1)
chr1	11190779	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q1807L|2549|MTOR||CODING|NM_004958.3|39|1)
chr1	11190779	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q1807L|2549|MTOR||CODING|NM_004958.3|39|1)
chr1	11193145	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgg/Agg|W1786R|2549|MTOR||CODING|NM_004958.3|38|1)
chr1	11193145	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgg/Agg|W1786R|2549|MTOR||CODING|NM_004958.3|38|1)
chr1	11206734	.	T	C	0.0	PASS	AC=3;EFF=INTRON(MODIFIER|||||MTOR-AS1||NON_CODING|NR_046600.1|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cGg|Q1562R|2549|MTOR||CODING|NM_004958.3|32|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|32|1)
chr1	11206734	.	T	C	0.0	PASS	AC=3;EFF=INTRON(MODIFIER|||||MTOR-AS1||NON_CODING|NR_046600.1|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cGg|Q1562R|2549|MTOR||CODING|NM_004958.3|32|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|32|1)
chr1	11206738	.	G	T	0.0	PASS	AC=2;EFF=INTRON(MODIFIER|||||MTOR-AS1||NON_CODING|NR_046600.1|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Caa/Aaa|Q1561K|2549|MTOR||CODING|NM_004958.3|32|1)
chr1	11206738	.	G	T	0.0	PASS	AC=2;EFF=INTRON(MODIFIER|||||MTOR-AS1||NON_CODING|NR_046600.1|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Caa/Aaa|Q1561K|2549|MTOR||CODING|NM_004958.3|32|1)
chr1	11206744	.	A	T	0.0	PASS	AC=1;EFF=INTRON(MODIFIER|||||MTOR-AS1||NON_CODING|NR_046600.1|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttg/Atg|L1559M|2549|MTOR||CODING|NM_004958.3|32|1)
chr1	11206744	.	A	T	0.0	PASS	AC=1;EFF=INTRON(MODIFIER|||||MTOR-AS1||NON_CODING|NR_046600.1|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttg/Atg|L1559M|2549|MTOR||CODING|NM_004958.3|32|1)
chr1	11217287	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAc/gGc|D1464G|2549|MTOR||CODING|NM_004958.3|30|1)
chr1	11217287	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAc/gGc|D1464G|2549|MTOR||CODING|NM_004958.3|30|1)
chr1	11227525	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tat/Aat|Y1435N|2549|MTOR||CODING|NM_004958.3|29|1)
chr1	11227525	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tat/Aat|Y1435N|2549|MTOR||CODING|NM_004958.3|29|1)
chr1	11227537	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gga/Aga|G1431R|2549|MTOR||CODING|NM_004958.3|29|1)
chr1	11227537	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gga/Aga|G1431R|2549|MTOR||CODING|NM_004958.3|29|1)
chr1	11259644	.	G	T	0.0	PASS	AC=1;EFF=DOWNSTREAM(MODIFIER||3606||346|ANGPTL7||CODING|NM_021146.2||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCa/aAa|T1354K|2549|MTOR||CODING|NM_004958.3|27|1)
chr1	11259644	.	G	T	0.0	PASS	AC=1;EFF=DOWNSTREAM(MODIFIER||3606||346|ANGPTL7||CODING|NM_021146.2||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCa/aAa|T1354K|2549|MTOR||CODING|NM_004958.3|27|1)
chr1	11259750	.	T	A	0.0	PASS	AC=1;EFF=DOWNSTREAM(MODIFIER||3712||346|ANGPTL7||CODING|NM_021146.2||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aat/Tat|N1319Y|2549|MTOR||CODING|NM_004958.3|27|1)
chr1	11259750	.	T	A	0.0	PASS	AC=1;EFF=DOWNSTREAM(MODIFIER||3712||346|ANGPTL7||CODING|NM_021146.2||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aat/Tat|N1319Y|2549|MTOR||CODING|NM_004958.3|27|1)
chr1	11259758	.	T	A	0.0	PASS	AC=1;EFF=DOWNSTREAM(MODIFIER||3720||346|ANGPTL7||CODING|NM_021146.2||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAt/gTt|D1316V|2549|MTOR||CODING|NM_004958.3|27|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|27|1)
chr1	11259758	.	T	A	0.0	PASS	AC=1;EFF=DOWNSTREAM(MODIFIER||3720||346|ANGPTL7||CODING|NM_021146.2||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAt/gTt|D1316V|2549|MTOR||CODING|NM_004958.3|27|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|27|1)
chr1	11270908	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAt/cGt|H1206R|2549|MTOR||CODING|NM_004958.3|24|1)
chr1	11270908	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAt/cGt|H1206R|2549|MTOR||CODING|NM_004958.3|24|1)
chr1	11270914	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aAc|I1204N|2549|MTOR||CODING|NM_004958.3|24|1)
chr1	11270914	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aAc|I1204N|2549|MTOR||CODING|NM_004958.3|24|1)
chr1	11272373	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAg/aGg|K1186R|2549|MTOR||CODING|NM_004958.3|23|1)
chr1	11272373	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAg/aGg|K1186R|2549|MTOR||CODING|NM_004958.3|23|1)
chr1	11272887	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttt/Ctt|F1122L|2549|MTOR||CODING|NM_004958.3|22|1)
chr1	11272887	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttt/Ctt|F1122L|2549|MTOR||CODING|NM_004958.3|22|1)
chr1	11272895	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTt/gAt|V1119D|2549|MTOR||CODING|NM_004958.3|22|1)
chr1	11273460	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aAc|I1094N|2549|MTOR||CODING|NM_004958.3|21|1)
chr1	11273495	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttC/ttA|F1082L|2549|MTOR||CODING|NM_004958.3|21|1)
chr1	11273527	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ccc/Acc|P1072T|2549|MTOR||CODING|NM_004958.3|21|1)
chr1	11273541	.	A	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTt/tGt|F1067C|2549|MTOR||CODING|NM_004958.3|21|1)
chr1	11273610	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aAg|M1044K|2549|MTOR||CODING|NM_004958.3|21|1)
chr1	11273618	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttC/ttA|F1041L|2549|MTOR||CODING|NM_004958.3|21|1)
chr1	11276206	.	C	T	0.0	PASS	AC=7;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aGa/aAa|R1039K|2549|MTOR||CODING|NM_004958.3|20|1),SPLICE_SITE_REGION(LOW||||2549|MTOR||CODING|NM_004958.3|20|1)
chr1	11276209	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aAg|M1038K|2549|MTOR||CODING|NM_004958.3|20|1)
chr1	11288774	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aAg|M994K|2549|MTOR||CODING|NM_004958.3|19|1)
chr1	11288955	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Atg/Gtg|M934V|2549|MTOR||CODING|NM_004958.3|19|1)
chr1	11290986	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaT/gaA|D925E|2549|MTOR||CODING|NM_004958.3|18|1)
chr1	11291023	.	G	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tCt/tTt|S913F|2549|MTOR||CODING|NM_004958.3|18|1)
chr1	11291105	.	G	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgt/Tgt|R886C|2549|MTOR||CODING|NM_004958.3|18|1)
chr1	11291431	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agg/Tgg|R859W|2549|MTOR||CODING|NM_004958.3|17|1)
chr1	11291446	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gta/Tta|V854L|2549|MTOR||CODING|NM_004958.3|17|1)
chr1	11291448	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAt/tTt|Y853F|2549|MTOR||CODING|NM_004958.3|17|1)
chr1	11291481	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGg/tTg|W842L|2549|MTOR||CODING|NM_004958.3|17|1)
chr1	11292552	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gaa/Aaa|E819K|2549|MTOR||CODING|NM_004958.3|16|1)
chr1	11293485	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaA|N797K|2549|MTOR||CODING|NM_004958.3|15|1)
chr1	11297920	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctg/Atg|L730M|2549|MTOR||CODING|NM_004958.3|13|1)
chr1	11298513	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Caa/Aaa|Q650K|2549|MTOR||CODING|NM_004958.3|12|1)
chr1	11298542	rs201965377	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAt/cGt|H640R|2549|MTOR||CODING|NM_004958.3|12|1)
chr1	11303295	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgt/Agt|R430S|2549|MTOR||CODING|NM_004958.3|9|1)
chr1	11308099	.	T	C	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAg/aGg|K298R|2549|MTOR||CODING|NM_004958.3|7|1)
chr1	11313936	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTc/aAc|I267N|2549|MTOR||CODING|NM_004958.3|6|1)
chr1	11316108	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgt/Agt|C216S|2549|MTOR||CODING|NM_004958.3|5|1)
chr1	11316173	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTt/aAt|I194N|2549|MTOR||CODING|NM_004958.3|5|1)
chr1	11316237	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgt/Agt|R173S|2549|MTOR||CODING|NM_004958.3|5|1)
chr1	11317142	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aat/Tat|N118Y|2549|MTOR||CODING|NM_004958.3|4|1)
chr1	11317181	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ggc/Tgc|G105C|2549|MTOR||CODING|NM_004958.3|4|1)
chr1	27056151	.	C	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cca/Tca|P383S|2068|ARID1A||CODING|NM_139135.2|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cca/Tca|P383S|2285|ARID1A||CODING|NM_006015.4|2|1)
chr1	27056349	.	C	A	0.0	PASS	AC=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q449K|2068|ARID1A||CODING|NM_139135.2|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q449K|2285|ARID1A||CODING|NM_006015.4|2|1)
chr1	27057781	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Caa/Aaa|Q497K|2068|ARID1A||CODING|NM_139135.2|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Caa/Aaa|Q497K|2285|ARID1A||CODING|NM_006015.4|3|1)
chr1	27057944	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAc/tGc|Y551C|2068|ARID1A||CODING|NM_139135.2|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tAc/tGc|Y551C|2285|ARID1A||CODING|NM_006015.4|3|1)
chr1	27059246	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aAg|M628K|2068|ARID1A||CODING|NM_139135.2|4|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aAg|M628K|2285|ARID1A||CODING|NM_006015.4|4|1)
chr1	27059254	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Ggc|S631G|2068|ARID1A||CODING|NM_139135.2|4|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Ggc|S631G|2285|ARID1A||CODING|NM_006015.4|4|1)
chr1	27087348	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAt/gTt|D641V|2068|ARID1A||CODING|NM_139135.2|5|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAt/gTt|D641V|2285|ARID1A||CODING|NM_006015.4|5|1),SPLICE_SITE_REGION(LOW||||2068|ARID1A||CODING|NM_139135.2|5|1),SPLICE_SITE_REGION(LOW||||2285|ARID1A||CODING|NM_006015.4|5|1)
chr1	27088650	.	G	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atG/atT|M753I|2068|ARID1A||CODING|NM_139135.2|7|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atG/atT|M753I|2285|ARID1A||CODING|NM_006015.4|7|1)
chr1	27089492	.	T	G	0.0	PASS	AC=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaG|N816K|2068|ARID1A||CODING|NM_139135.2|8|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaT/aaG|N816K|2285|ARID1A||CODING|NM_006015.4|8|1)
chr1	27092802	.	C	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atC/atG|I941M|2068|ARID1A||CODING|NM_139135.2|9|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|atC/atG|I941M|2285|ARID1A||CODING|NM_006015.4|9|1)
chr1	27092990	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAg/aGg|K974R|2068|ARID1A||CODING|NM_139135.2|10|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAg/aGg|K974R|2285|ARID1A||CODING|NM_006015.4|10|1)
chr1	27099326	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q1188L|2068|ARID1A||CODING|NM_139135.2|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q1188L|2285|ARID1A||CODING|NM_006015.4|14|1)
chr1	27099368	.	G	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGg/cAg|R1202Q|2068|ARID1A||CODING|NM_139135.2|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGg/cAg|R1202Q|2285|ARID1A||CODING|NM_006015.4|14|1)
chr1	27099389	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cAt|P1209H|2068|ARID1A||CODING|NM_139135.2|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cAt|P1209H|2285|ARID1A||CODING|NM_006015.4|14|1)
chr1	27100881	rs148567002	T	A	0.0	PASS	AC=1;EFF=INTRON(MODIFIER||||2068|ARID1A||CODING|NM_139135.2|17|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aAg|M1388K|2285|ARID1A||CODING|NM_006015.4|18|1)
chr1	27100890	.	T	G	0.0	PASS	AC=1;EFF=INTRON(MODIFIER||||2068|ARID1A||CODING|NM_139135.2|17|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTg/gGg|V1391G|2285|ARID1A||CODING|NM_006015.4|18|1)
chr1	27101106	.	G	A	0.0	PASS	AC=2;EFF=INTRON(MODIFIER||||2068|ARID1A||CODING|NM_139135.2|17|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGt/cAt|R1463H|2285|ARID1A||CODING|NM_006015.4|18|1)
chr1	27101466	.	C	T	0.0	PASS	AC=4;EFF=INTRON(MODIFIER||||2068|ARID1A||CODING|NM_139135.2|17|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cTt|P1583L|2285|ARID1A||CODING|NM_006015.4|18|1),SPLICE_SITE_REGION(LOW||||2068|ARID1A||CODING|NM_139135.2|17|1)
chr1	27106085	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cAt|P1682H|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cAt|P1899H|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27106229	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q1730L|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q1947L|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27106486	.	A	G	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aag/Gag|K1816E|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aag/Gag|K2033E|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27106648	.	G	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gga/Aga|G1870R|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gga/Aga|G2087R|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27106732	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q1898K|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q2115K|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27106777	.	A	T	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aac/Tac|N1913Y|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aac/Tac|N2130Y|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27106951	.	C	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q1971K|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q2188K|2285|ARID1A||CODING|NM_006015.4|20|1)
chr1	27107225	.	T	A	0.0	PASS	AC=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTg/cAg|L2062Q|2068|ARID1A||CODING|NM_139135.2|20|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTg/cAg|L2279Q|2285|ARID1A||CODING|NM_006015.4|20|1)
