##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##SnpEffCmd="SnpEff  -s GLBRC_snpEff_input.html maizeZmB73 GLBRC_snpEff_input.vcf "
##INFO=<ID=ANN,Number=.,Type=String,Description="Functional annotations: 'Allele | Annotation | Annotation_Impact | Gene_Name | Gene_ID | Feature_Type | Feature_ID | Transcript_BioType | Rank | HGVS.c | HGVS.p | cDNA.pos / cDNA.length | CDS.pos / CDS.length | AA.pos / AA.length | Distance | ERRORS / WARNINGS / INFO' ">
##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' ">
##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' ">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	GLBRC_PH207.bt2.sorted.merged.deduplicated.bam
10	146569454	.	ACCTTACCC	ACC	30.0	.	DP=1;ANN=|5_prime_UTR_truncation+exon_loss_variant|MODERATE|GRMZM2G384255|GRMZM2G384255|transcript|GRMZM2G384255_T01|Coding|1/1|c.-6_-1delTTACCC||||||INFO_REALIGN_3_PRIME	GT:PL:DP:GQ	1/1:70,12,0:4:21
